Experiment set2IT003 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Lomefloxacin hydrochloride 0.1 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS09140 +1.7 4.5 MerR family transcriptional regulator compare
CA265_RS02765 +1.5 5.2 cell division protein ZapA compare
CA265_RS03495 +1.2 3.6 cytochrome c biogenesis protein compare
CA265_RS21065 +1.0 3.3 hypothetical protein compare
CA265_RS14825 +1.0 2.2 outer membrane protein assembly factor BamD compare
CA265_RS03715 +0.9 2.6 hypothetical protein compare
CA265_RS23545 +0.9 1.9 NADH dehydrogenase subunit D compare
CA265_RS14410 +0.9 5.9 4-amino-4-deoxychorismate lyase compare
CA265_RS01975 +0.9 3.1 cell division protein compare
CA265_RS18495 +0.9 2.2 hypothetical protein compare
CA265_RS09650 +0.9 2.0 diaminopimelate decarboxylase compare
CA265_RS06030 +0.8 1.8 SelT/selW/selH selenoprotein compare
CA265_RS09335 +0.8 3.4 DUF4442 domain-containing protein compare
CA265_RS07535 +0.8 2.0 ATPase compare
CA265_RS06010 +0.8 3.2 hypothetical protein compare
CA265_RS12665 +0.8 1.5 cold-shock protein compare
CA265_RS05575 +0.7 2.2 hypothetical protein compare
CA265_RS04385 +0.7 2.5 hypothetical protein compare
CA265_RS19940 +0.7 5.5 hypothetical protein compare
CA265_RS18745 +0.7 1.7 hypothetical protein compare
CA265_RS09425 +0.7 1.7 hypothetical protein compare
CA265_RS21330 +0.7 3.9 TetR family transcriptional regulator compare
CA265_RS05035 +0.7 1.8 TetR family transcriptional regulator compare
CA265_RS04485 +0.7 2.5 hypothetical protein compare
CA265_RS02760 +0.7 1.3 hypothetical protein compare
CA265_RS05030 +0.6 1.9 GNAT family N-acetyltransferase compare
CA265_RS08965 +0.6 3.9 thioesterase compare
CA265_RS20315 +0.6 5.1 hypothetical protein compare
CA265_RS16140 +0.6 0.9 hypothetical protein compare
CA265_RS13170 +0.6 1.2 hypothetical protein compare
CA265_RS15035 +0.6 1.8 prevent-host-death protein compare
CA265_RS09320 +0.6 1.3 hypothetical protein compare
CA265_RS19165 +0.6 1.3 serine hydroxymethyltransferase compare
CA265_RS15200 +0.6 2.5 hypothetical protein compare
CA265_RS23355 +0.6 2.8 hypothetical protein compare
CA265_RS07470 +0.6 2.2 hypothetical protein compare
CA265_RS04820 +0.6 3.0 GntR family transcriptional regulator compare
CA265_RS12985 +0.5 1.9 hypothetical protein compare
CA265_RS25295 +0.5 3.1 DoxX family protein compare
CA265_RS09740 +0.5 1.1 transcriptional regulator compare
CA265_RS22800 +0.5 3.7 glycosyl transferase compare
CA265_RS21060 +0.5 1.2 hypothetical protein compare
CA265_RS19945 +0.5 2.8 hypothetical protein compare
CA265_RS19540 +0.5 4.2 tail-specific protease compare
CA265_RS22450 +0.5 2.3 GntR family transcriptional regulator compare
CA265_RS10510 +0.5 1.8 hypothetical protein compare
CA265_RS13050 +0.5 2.5 hypothetical protein compare
CA265_RS16990 +0.5 1.5 hypothetical protein compare
CA265_RS10390 +0.5 1.3 hypothetical protein compare
CA265_RS01410 +0.5 3.1 hypothetical protein compare
CA265_RS01950 +0.5 1.8 hypothetical protein compare
CA265_RS16940 +0.5 2.8 plasmid stabilization system protein compare
CA265_RS00655 +0.5 2.5 RNA polymerase subunit sigma-24 compare
CA265_RS03765 +0.5 1.9 hypothetical protein compare
CA265_RS21255 +0.5 3.7 hypothetical protein compare
CA265_RS12475 +0.5 2.2 hypothetical protein compare
CA265_RS03490 +0.5 2.6 hypothetical protein compare
CA265_RS24480 +0.5 2.1 hypothetical protein compare
CA265_RS02795 +0.5 1.1 hypothetical protein compare
CA265_RS20320 +0.5 4.3 hypothetical protein compare
CA265_RS05055 +0.5 2.9 hypothetical protein compare
CA265_RS20395 +0.5 1.4 hypothetical protein compare
CA265_RS03115 +0.5 1.2 peroxiredoxin compare
CA265_RS23020 +0.5 3.5 hypothetical protein compare
CA265_RS11540 +0.5 2.7 heat-shock protein compare
CA265_RS15640 +0.5 3.7 sugar kinase compare
CA265_RS17555 +0.5 3.5 hypothetical protein compare
CA265_RS00395 +0.5 2.1 hypothetical protein compare
CA265_RS24790 +0.5 3.3 peptidylprolyl isomerase compare
CA265_RS03360 +0.4 2.9 hypothetical protein compare
CA265_RS12825 +0.4 1.8 hypothetical protein compare
CA265_RS12330 +0.4 1.2 response regulator compare
CA265_RS16030 +0.4 2.7 hypothetical protein compare
CA265_RS23905 +0.4 2.9 hypothetical protein compare
CA265_RS20070 +0.4 1.6 NadR compare
CA265_RS13985 +0.4 1.5 hypothetical protein compare
CA265_RS24650 +0.4 1.1 beta-phosphoglucomutase compare
CA265_RS18115 +0.4 2.8 gliding motility protein GldN compare
CA265_RS15115 +0.4 2.2 porin compare
CA265_RS04140 +0.4 3.1 glycogen synthase compare
CA265_RS10600 +0.4 1.8 RNA polymerase subunit sigma-24 compare
CA265_RS25400 +0.4 2.3 fatty acid desaturase compare
CA265_RS15370 +0.4 1.9 glycosyl hydrolase compare
CA265_RS15190 +0.4 1.7 RNA polymerase sigma factor compare
CA265_RS17535 +0.4 2.8 deoxyribodipyrimidine photolyase compare
CA265_RS21265 +0.4 2.7 hypothetical protein compare
CA265_RS18485 +0.4 1.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS15085 +0.4 2.5 hypothetical protein compare
CA265_RS23895 +0.4 1.9 preprotein translocase compare
CA265_RS04790 +0.4 1.9 hypothetical protein compare
CA265_RS04245 +0.4 1.4 hypothetical protein compare
CA265_RS19575 +0.4 1.3 glycoside hydrolase compare
CA265_RS19465 +0.4 1.9 protein tyrosine phosphatase compare
CA265_RS23640 +0.4 3.0 hypothetical protein compare
CA265_RS18285 +0.4 2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
CA265_RS10585 +0.4 2.4 transcriptional regulator compare
CA265_RS24355 +0.4 1.5 transcriptional regulator compare
CA265_RS09395 +0.4 1.7 hypothetical protein compare
CA265_RS18225 +0.4 2.8 DNA-binding response regulator compare
CA265_RS22600 +0.4 2.6 hypothetical protein compare
CA265_RS08570 +0.4 1.0 dehydratase compare
CA265_RS16650 +0.4 1.9 GNAT family N-acetyltransferase compare
CA265_RS03435 +0.4 1.4 hypothetical protein compare
CA265_RS16035 +0.4 2.5 oxidoreductase compare
CA265_RS17115 +0.4 1.8 arsenate reductase compare
CA265_RS14390 +0.4 0.9 hypothetical protein compare
CA265_RS03640 +0.4 2.0 ATP phosphoribosyltransferase compare
CA265_RS21360 +0.4 1.5 hypothetical protein compare
CA265_RS11055 +0.4 2.6 hypothetical protein compare
CA265_RS21080 +0.4 1.8 hypothetical protein compare
CA265_RS12010 +0.4 1.8 hypothetical protein compare
CA265_RS05665 +0.4 2.7 LLM class flavin-dependent oxidoreductase compare
CA265_RS19455 +0.4 2.8 hypothetical protein compare
CA265_RS17390 +0.4 2.2 PadR family transcriptional regulator compare
CA265_RS24445 +0.4 1.3 hypothetical protein compare
CA265_RS18120 +0.4 2.9 gliding motility protein GldM compare
CA265_RS20095 +0.4 1.7 NADH oxidase compare
CA265_RS00335 +0.4 1.1 hypothetical protein compare
CA265_RS05330 +0.4 1.2 hypothetical protein compare
CA265_RS16225 +0.4 0.8 hypothetical protein compare
CA265_RS00015 +0.4 2.1 hypothetical protein compare
CA265_RS18205 +0.4 2.4 hypothetical protein compare
CA265_RS11955 +0.4 1.4 Error-prone repair protein ImuA compare
CA265_RS21320 +0.4 1.6 hypothetical protein compare
CA265_RS13005 +0.4 2.5 peptidase M20 compare
CA265_RS21220 +0.4 1.8 hypothetical protein compare
CA265_RS23670 +0.4 2.3 cyclic nucleotide-binding protein compare
CA265_RS23915 +0.4 2.3 G-D-S-L family lipolytic protein compare
CA265_RS16270 +0.4 1.8 hypothetical protein compare
CA265_RS15480 +0.4 2.5 sterol desaturase compare
CA265_RS16495 +0.4 2.0 hypothetical protein compare
CA265_RS13045 +0.4 2.4 hypothetical protein compare
CA265_RS21010 +0.4 1.7 hypothetical protein compare
CA265_RS03325 +0.4 1.5 hypothetical protein compare
CA265_RS06515 +0.4 1.1 hypothetical protein compare
CA265_RS19345 +0.4 2.4 hypothetical protein compare
CA265_RS20785 +0.4 1.1 hypothetical protein compare
CA265_RS12870 +0.4 2.6 hypothetical protein compare
CA265_RS23460 +0.4 1.3 hypothetical protein compare
CA265_RS21395 +0.3 0.7 hypothetical protein compare
CA265_RS18110 +0.3 2.5 excinuclease ABC subunit C compare
CA265_RS05060 +0.3 1.5 hypothetical protein compare
CA265_RS19405 +0.3 1.7 transcriptional regulator compare
CA265_RS09445 +0.3 2.2 tetracycline resistance MFS efflux pump compare
CA265_RS18130 +0.3 2.8 gliding motility-associated lipoprotein compare
CA265_RS07460 +0.3 1.4 deoxynucleoside kinase compare
CA265_RS14875 +0.3 2.2 radical SAM protein compare
CA265_RS15910 +0.3 2.5 hypothetical protein compare
CA265_RS24205 +0.3 2.0 hypothetical protein compare
CA265_RS12625 +0.3 1.6 hypothetical protein compare
CA265_RS01855 +0.3 2.3 hypothetical protein compare
CA265_RS21260 +0.3 2.5 hypothetical protein compare
CA265_RS11050 +0.3 1.2 hypothetical protein compare
CA265_RS17090 +0.3 0.9 DUF2132 domain-containing protein compare
CA265_RS05135 +0.3 1.4 ferritin compare
CA265_RS01100 +0.3 1.7 transcriptional regulator compare
CA265_RS18990 +0.3 3.0 cell surface protein SprA compare
CA265_RS19410 +0.3 1.0 hypothetical protein compare
CA265_RS06535 +0.3 1.6 hypothetical protein compare
CA265_RS04465 +0.3 1.1 PspC family transcriptional regulator compare
CA265_RS18475 +0.3 1.9 hypothetical protein compare
CA265_RS02500 +0.3 1.8 hypothetical protein compare
CA265_RS18450 +0.3 2.3 peptidase compare
CA265_RS07615 +0.3 1.0 hypothetical protein compare
CA265_RS10565 +0.3 1.9 hypothetical protein compare
CA265_RS23485 +0.3 1.3 hypothetical protein compare
CA265_RS19605 +0.3 2.0 serine hydrolase compare
CA265_RS03695 +0.3 1.9 hypothetical protein compare
CA265_RS23305 +0.3 0.6 hypothetical protein compare
CA265_RS24800 +0.3 1.3 hypothetical protein compare
CA265_RS24920 +0.3 1.3 hypothetical protein compare
CA265_RS22620 +0.3 0.9 hypothetical protein compare
CA265_RS23090 +0.3 1.5 transcriptional regulator compare
CA265_RS14620 +0.3 1.4 hypothetical protein compare
CA265_RS06890 +0.3 1.2 glyoxalase compare
CA265_RS08020 +0.3 1.5 hypothetical protein compare
CA265_RS03330 +0.3 1.3 hypothetical protein compare
CA265_RS12750 +0.3 2.3 hypothetical protein compare
CA265_RS22805 +0.3 2.1 glycosyl transferase compare
CA265_RS12745 +0.3 1.3 NUDIX hydrolase compare
CA265_RS18895 +0.3 2.2 ATPase compare
CA265_RS22165 +0.3 0.7 hypothetical protein compare
CA265_RS02210 +0.3 1.8 threonine aldolase compare
CA265_RS18250 +0.3 2.2 hypothetical protein compare
CA265_RS07775 +0.3 1.7 hypothetical protein compare
CA265_RS10435 +0.3 1.4 RNA-binding protein compare
CA265_RS04295 +0.3 0.8 transcriptional regulator compare
CA265_RS23755 +0.3 2.0 lauroyl acyltransferase compare
CA265_RS07555 +0.3 2.0 hypothetical protein compare
CA265_RS02965 +0.3 1.5 hypothetical protein compare
CA265_RS16490 +0.3 2.3 asparagine synthetase B compare
CA265_RS22115 +0.3 1.6 hypothetical protein compare
CA265_RS06425 +0.3 1.3 hypothetical protein compare
CA265_RS09390 +0.3 2.1 hypothetical protein compare
CA265_RS01195 +0.3 1.5 hypothetical protein compare
CA265_RS21915 +0.3 2.2 LacI family transcriptional regulator compare
CA265_RS00405 +0.3 1.7 DNA-binding response regulator compare
CA265_RS19760 +0.3 1.1 hypothetical protein compare
CA265_RS19505 +0.3 1.7 GxxExxY protein compare
CA265_RS24265 +0.3 1.2 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Lomefloxacin hydrochloride in Pedobacter sp. GW460-11-11-14-LB5

For stress Lomefloxacin hydrochloride across organisms