Experiment set2IT002 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5943 -4.3 -3.0 hypothetical protein compare
Pf6N2E2_3842 -4.3 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4597 -4.2 -4.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5006 -4.1 -4.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4596 -4.0 -4.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -3.9 -4.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4564 -3.9 -5.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4825 -3.9 -4.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1381 -3.8 -3.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3610 -3.8 -3.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_180 -3.6 -3.5 Transcriptional regulator, MerR family compare
Pf6N2E2_5014 -3.4 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_77 -3.4 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5175 -3.4 -9.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5176 -3.4 -5.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2675 -3.3 -1.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5255 -3.2 -7.9 Outer membrane stress sensor protease DegS compare
Pf6N2E2_4206 -3.1 -2.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_71 -3.1 -4.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4047 -3.0 -3.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3752 -3.0 -12.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -3.0 -4.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_624 -3.0 -4.9 hypothetical protein PA3071 compare
Pf6N2E2_3062 -2.9 -3.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3942 -2.9 -7.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4077 -2.9 -2.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5646 -2.9 -2.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5780 -2.9 -5.2 Periplasmic protease compare
Pf6N2E2_4362 -2.8 -2.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3751 -2.8 -8.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_282 -2.8 -1.8 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3839 -2.8 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1400 -2.8 -9.5 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3253 -2.8 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2496 -2.8 -2.1 FIG00956575: hypothetical protein compare
Pf6N2E2_3665 -2.8 -1.2 serine/threonine protein kinase compare
Pf6N2E2_64 -2.7 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3833 -2.7 -4.8 hypothetical protein compare
Pf6N2E2_3252 -2.7 -5.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4478 -2.7 -5.7 FIG019278: hypothetical protein compare
Pf6N2E2_1932 -2.5 -4.2 Transcriptional regulator, IclR family compare
Pf6N2E2_2752 -2.5 -4.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2756 -2.5 -4.2 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5219 -2.5 -7.3 FIG140336: TPR domain protein compare
Pf6N2E2_1402 -2.5 -6.3 hypothetical protein compare
Pf6N2E2_4052 -2.5 -1.6 FIG00955481: hypothetical protein compare
Pf6N2E2_2200 -2.5 -1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3060 -2.4 -2.2 Outer membrane protein H precursor compare
Pf6N2E2_2574 -2.4 -1.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_66 -2.3 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3783 -2.3 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2753 -2.3 -2.2 HtrA protease/chaperone protein compare
Pf6N2E2_5430 -2.2 -6.2 Transglycosylase, Slt family compare
Pf6N2E2_3782 -2.1 -3.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3171 -2.1 -1.3 hypothetical protein compare
Pf6N2E2_625 -2.1 -3.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3271 -2.1 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5177 -2.1 -4.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5252 -2.1 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_5328 -2.0 -3.9 FIG00958649: hypothetical protein compare
Pf6N2E2_5862 -2.0 -0.9 Lipoprotein, putative compare
Pf6N2E2_664 -2.0 -1.9 Acetoin catabolism protein X compare
Pf6N2E2_3613 -2.0 -6.0 GTP-binding protein HflX compare
Pf6N2E2_3630 -2.0 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4009 -1.9 -7.1 GGDEF domain protein compare
Pf6N2E2_3941 -1.9 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3661 -1.9 -2.9 hypothetical protein compare
Pf6N2E2_2217 -1.9 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3835 -1.8 -2.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_127 -1.8 -1.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3984 -1.7 -6.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_63 -1.7 -2.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_620 -1.7 -4.7 BatD compare
Pf6N2E2_2885 -1.7 -4.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4169 -1.7 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5316 -1.7 -1.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5919 -1.6 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_3248 -1.6 -3.7 Probable transmembrane protein compare
Pf6N2E2_4638 -1.6 -1.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3761 -1.6 -10.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_6065 -1.6 -1.6 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_3940 -1.6 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_621 -1.6 -4.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2962 -1.6 -2.8 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_939 -1.6 -2.5 hypothetical protein compare
Pf6N2E2_75 -1.6 -2.9 Colicin V production protein compare
Pf6N2E2_2509 -1.5 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5579 -1.5 -5.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_922 -1.5 -2.5 FIG00794167: hypothetical protein compare
Pf6N2E2_3170 -1.5 -4.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2714 -1.5 -2.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3720 -1.5 -2.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_6090 -1.5 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5345 -1.5 -5.5 LppC putative lipoprotein compare
Pf6N2E2_623 -1.5 -0.9 FIG00954674: hypothetical protein compare
Pf6N2E2_4372 -1.5 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_1293 -1.5 -2.3 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_5160 -1.4 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4584 -1.4 -2.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1403 -1.4 -2.5 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_3557 -1.4 -2.0 Chaperone-modulator protein CbpM compare
Pf6N2E2_2010 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_3725 -1.4 -2.2 FIG085779: Lipoprotein compare
Pf6N2E2_4392 -1.4 -1.3 Translation initiation inhibitor compare
Pf6N2E2_3132 -1.4 -2.2 FIG00954548: hypothetical protein compare
Pf6N2E2_4759 -1.4 -7.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3257 -1.4 -2.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2152 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_6140 -1.3 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_6100 -1.3 -1.6 tRNA-Val-TAC compare
Pf6N2E2_5609 -1.3 -3.7 DNA-binding response regulator ColR compare
Pf6N2E2_5049 -1.3 -1.5 acetyltransferase, GNAT family compare
Pf6N2E2_2912 -1.3 -0.9 FIG00954094: hypothetical protein compare
Pf6N2E2_6099 -1.3 -1.1 tRNA-Glu-TTC compare
Pf6N2E2_2507 -1.3 -3.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3841 -1.3 -3.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5052 -1.3 -1.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2323 -1.3 -2.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_1706 -1.3 -2.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4317 -1.3 -2.1 FIG00964469: hypothetical protein compare
Pf6N2E2_1463 -1.2 -1.6 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_3727 -1.2 -1.3 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_3834 -1.2 -4.1 Lipoprotein NlpD compare
Pf6N2E2_5899 -1.2 -4.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2195 -1.2 -2.7 cI compare
Pf6N2E2_5567 -1.2 -1.9 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_5766 -1.2 -1.3 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_5771 -1.2 -4.0 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2121 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_4585 -1.2 -6.5 Cell division protein FtsX compare
Pf6N2E2_1821 -1.2 -1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_99 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_4150 -1.2 -2.3 probable exported protein YPO0432 compare
Pf6N2E2_953 -1.2 -1.5 FIG00958851: hypothetical protein compare
Pf6N2E2_658 -1.2 -5.5 sensor histidine kinase compare
Pf6N2E2_2717 -1.2 -2.4 putative cytoplasmic protein compare
Pf6N2E2_5468 -1.2 -2.0 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3747 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_2483 -1.1 -2.6 Deoxyribonuclease TatD compare
Pf6N2E2_2788 -1.1 -1.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_5241 -1.1 -1.1 Aminopeptidase N compare
Pf6N2E2_5843 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_5727 -1.1 -3.2 FIG00955360: hypothetical protein compare
Pf6N2E2_4276 -1.1 -2.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3561 -1.1 -1.8 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_2561 -1.1 -2.0 FIG00955434: hypothetical protein compare
Pf6N2E2_248 -1.1 -4.3 hypothetical protein compare
Pf6N2E2_5560 -1.1 -2.4 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1596 -1.1 -0.9 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_2488 -1.1 -1.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3027 -1.1 -0.9 Baseplate assembly protein V compare
Pf6N2E2_5150 -1.1 -2.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3932 -1.1 -1.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4067 -1.1 -4.8 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_4611 -1.1 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2514 -1.1 -2.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3475 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_5756 -1.1 -1.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5610 -1.1 -3.7 two-component system sensor protein compare
Pf6N2E2_3282 -1.1 -1.2 FIG005080: Possible exported protein compare
Pf6N2E2_2176 -1.0 -1.0 Amidases related to nicotinamidase compare
Pf6N2E2_5704 -1.0 -3.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1834 -1.0 -1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3836 -1.0 -4.4 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase compare
Pf6N2E2_4485 -1.0 -5.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_5807 -1.0 -2.8 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_4453 -1.0 -7.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_808 -1.0 -5.2 Various polyols ABC transporter, permease component 2 compare
Pf6N2E2_1953 -1.0 -2.9 Uncharacterized conserved protein compare
Pf6N2E2_5505 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_4710 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_1718 -1.0 -1.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1404 -1.0 -1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_2508 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_4751 -1.0 -0.9 response regulator compare
Pf6N2E2_2300 -1.0 -2.2 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_3349 -1.0 -1.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4426 -1.0 -2.6 DNA-binding protein inhibitor Id-2-related protein compare
Pf6N2E2_5024 -1.0 -1.8 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_1236 -1.0 -1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4810 -1.0 -3.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_156 -1.0 -1.3 Carbon storage regulator compare
Pf6N2E2_413 -1.0 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2549 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_5262 -1.0 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_622 -1.0 -2.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2536 -1.0 -1.1 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_146 -1.0 -1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_2034 -1.0 -2.1 Methyltransferase compare
Pf6N2E2_4494 -1.0 -1.9 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3260 -0.9 -2.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5182 -0.9 -3.9 Paraquat-inducible protein A compare
Pf6N2E2_2970 -0.9 -1.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3969 -0.9 -1.0 Membrane-fusion protein compare
Pf6N2E2_1316 -0.9 -2.2 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_2674 -0.9 -0.8 FIG00953856: hypothetical protein compare
Pf6N2E2_6038 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_613 -0.9 -1.0 lipoprotein, putative compare
Pf6N2E2_2371 -0.9 -1.3 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1034 -0.9 -0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Fructose across organisms