Experiment set2IT001 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -6.7 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3783 -6.6 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5006 -6.5 -6.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_77 -6.5 -4.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3630 -6.3 -6.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -5.9 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -5.7 -10.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4825 -5.7 -8.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2258 -5.6 -9.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3839 -5.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5175 -5.3 -16.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5176 -5.2 -10.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3248 -5.2 -4.8 Probable transmembrane protein compare
Pf6N2E2_3610 -5.1 -7.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4826 -5.1 -8.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3252 -4.9 -8.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3842 -4.9 -6.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4047 -4.9 -6.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5014 -4.8 -2.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_64 -4.7 -4.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5177 -4.7 -12.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3751 -4.7 -14.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5527 -4.6 -4.5 Cold shock protein CspC compare
Pf6N2E2_3782 -4.6 -6.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_71 -4.5 -7.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4564 -4.5 -9.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3841 -4.5 -6.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2885 -4.2 -8.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2753 -4.2 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_4279 -4.1 -14.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3060 -4.1 -4.4 Outer membrane protein H precursor compare
Pf6N2E2_66 -4.1 -10.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4071 -4.1 -6.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3752 -4.1 -19.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4278 -4.0 -10.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3460 -4.0 -2.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5156 -4.0 -2.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3940 -3.9 -10.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_50 -3.9 -8.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4759 -3.8 -15.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_302 -3.7 -7.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5150 -3.6 -7.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2073 -3.6 -9.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4048 -3.6 -6.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3932 -3.5 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3257 -3.3 -5.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4761 -3.3 -12.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3170 -3.1 -7.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4638 -3.1 -4.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4416 -3.1 -4.2 Tyrosine recombinase XerC compare
Pf6N2E2_3251 -3.1 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2899 -3.1 -5.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4277 -3.0 -9.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4797 -2.9 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4763 -2.9 -10.2 Biotin synthesis protein BioC compare
Pf6N2E2_2863 -2.9 -7.5 Gluconate permease compare
Pf6N2E2_5728 -2.8 -5.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4764 -2.8 -7.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4187 -2.8 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3346 -2.8 -5.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5536 -2.7 -2.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_63 -2.7 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2074 -2.6 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5579 -2.6 -7.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2217 -2.5 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3835 -2.4 -6.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2218 -2.3 -5.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3349 -2.3 -3.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3258 -2.3 -5.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5553 -2.3 -8.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_4762 -2.3 -2.6 Biotin synthesis protein BioH compare
Pf6N2E2_5508 -2.3 -3.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4372 -2.3 -5.6 FIG00460773: hypothetical protein compare
Pf6N2E2_4206 -2.2 -3.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2465 -2.1 -6.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4276 -2.1 -5.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5342 -2.1 -4.4 21 kDa hemolysin precursor compare
Pf6N2E2_4631 -2.0 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3260 -2.0 -6.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2261 -2.0 -7.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_658 -2.0 -9.6 sensor histidine kinase compare
Pf6N2E2_6099 -2.0 -2.2 tRNA-Glu-TTC compare
Pf6N2E2_2274 -2.0 -5.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1718 -1.9 -4.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_4009 -1.9 -8.4 GGDEF domain protein compare
Pf6N2E2_5723 -1.9 -10.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5524 -1.9 -11.1 Outer membrane porin, OprD family compare
Pf6N2E2_4453 -1.9 -13.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5219 -1.8 -8.9 FIG140336: TPR domain protein compare
Pf6N2E2_5494 -1.8 -5.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_51 -1.8 -6.4 hypothetical protein compare
Pf6N2E2_2693 -1.8 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2588 -1.8 -4.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5316 -1.8 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5666 -1.7 -8.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2518 -1.7 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4369 -1.7 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5950 -1.7 -4.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3984 -1.7 -7.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2864 -1.7 -2.6 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5676 -1.7 -4.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5160 -1.7 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3264 -1.6 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_248 -1.6 -8.6 hypothetical protein compare
Pf6N2E2_3826 -1.6 -5.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5780 -1.6 -7.1 Periplasmic protease compare
Pf6N2E2_4362 -1.6 -3.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2010 -1.6 -2.2 hypothetical protein compare
Pf6N2E2_2897 -1.6 -7.4 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5520 -1.5 -6.4 Sensory box histidine kinase compare
Pf6N2E2_6140 -1.5 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4352 -1.5 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2514 -1.5 -4.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2574 -1.4 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2758 -1.4 -9.4 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_3351 -1.4 -4.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4417 -1.4 -4.0 Protein of unknown function DUF484 compare
Pf6N2E2_3938 -1.4 -8.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3201 -1.4 -3.9 Transcriptional regulator, MerR family compare
Pf6N2E2_5261 -1.4 -1.4 FIG00956983: hypothetical protein compare
Pf6N2E2_5027 -1.4 -9.1 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2282 -1.4 -3.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4803 -1.3 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2507 -1.3 -4.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4049 -1.3 -6.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_3039 -1.3 -5.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4454 -1.3 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1717 -1.3 -6.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_2186 -1.3 -4.5 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_1932 -1.3 -5.1 Transcriptional regulator, IclR family compare
Pf6N2E2_2706 -1.3 -3.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2852 -1.2 -7.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_3825 -1.2 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5103 -1.2 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3072 -1.2 -6.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_1056 -1.2 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4658 -1.1 -2.8 FIG00955006: hypothetical protein compare
Pf6N2E2_5391 -1.1 -7.2 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_1400 -1.1 -7.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3534 -1.1 -1.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2891 -1.1 -7.2 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2707 -1.1 -2.1 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2219 -1.1 -1.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3611 -1.1 -1.2 HflC protein compare
Pf6N2E2_2510 -1.1 -2.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5671 -1.1 -2.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4476 -1.1 -5.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5667 -1.1 -5.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3617 -1.1 -3.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2487 -1.1 -1.3 FIG00956090: hypothetical protein compare
Pf6N2E2_2088 -1.1 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5555 -1.0 -1.1 Cold shock protein CspA compare
Pf6N2E2_2277 -1.0 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4611 -1.0 -2.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5155 -1.0 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5188 -1.0 -3.7 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2013 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_2889 -1.0 -6.2 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_5768 -1.0 -2.6 DNA recombination-dependent growth factor C compare
Pf6N2E2_2508 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_451 -1.0 -1.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4527 -1.0 -3.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4545 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_3074 -1.0 -1.4 FIG00960973: hypothetical protein compare
Pf6N2E2_3834 -1.0 -5.3 Lipoprotein NlpD compare
Pf6N2E2_5943 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_58 -1.0 -1.4 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4448 -0.9 -3.3 probable P23 protein compare
Pf6N2E2_831 -0.9 -1.9 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_2895 -0.9 -5.2 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_3941 -0.9 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_288 -0.9 -2.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4162 -0.9 -1.6 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_724 -0.9 -2.0 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_2893 -0.9 -4.6 hypothetical protein compare
Pf6N2E2_1776 -0.9 -1.8 Chemotaxis protein CheD compare
Pf6N2E2_4181 -0.9 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_5277 -0.9 -4.8 FIG00953110: hypothetical protein compare
Pf6N2E2_3461 -0.9 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1402 -0.9 -4.7 hypothetical protein compare
Pf6N2E2_5190 -0.9 -5.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5252 -0.9 -1.5 FIG00956396: hypothetical protein compare
Pf6N2E2_1081 -0.9 -1.3 probable membrane protein YPO3302 compare
Pf6N2E2_5766 -0.9 -1.6 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1186 -0.9 -3.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5510 -0.9 -1.8 FIG00955324: hypothetical protein compare
Pf6N2E2_2708 -0.9 -3.0 Lactam utilization protein LamB compare
Pf6N2E2_2320 -0.9 -1.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2896 -0.9 -2.0 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_65 -0.9 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_4205 -0.9 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4800 -0.8 -6.6 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3786 -0.8 -1.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_2286 -0.8 -2.3 FIG00953287: hypothetical protein compare
Pf6N2E2_5226 -0.8 -1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_2496 -0.8 -1.7 FIG00956575: hypothetical protein compare
Pf6N2E2_2340 -0.8 -3.1 Transcriptional regulator, GntR family compare
Pf6N2E2_2892 -0.8 -5.4 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_3040 -0.8 -3.4 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2674 -0.8 -1.1 FIG00953856: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Glucose across organisms