Experiment set2IT001 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4153 +1.7 3.0 Sensory box histidine kinase compare
Pf6N2E2_6057 +1.6 4.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2755 +1.5 2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2057 +1.3 8.9 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_3978 +1.3 11.0 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_3979 +1.3 9.8 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_6058 +1.3 6.5 FIG139976: hypothetical protein compare
Pf6N2E2_5705 +1.2 2.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3981 +1.2 11.1 T1SS secreted agglutinin RTX compare
Pf6N2E2_5720 +1.2 9.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2597 +1.2 8.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_2794 +1.1 1.4 putative membrane protein compare
Pf6N2E2_2022 +1.1 6.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1981 +1.1 6.1 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3791 +1.0 7.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_902 +1.0 1.9 hypothetical protein compare
Pf6N2E2_2589 +1.0 5.5 Flagellar protein FliJ compare
Pf6N2E2_2593 +1.0 5.9 Flagellar M-ring protein FliF compare
Pf6N2E2_2594 +1.0 5.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_4336 +1.0 6.3 Uncharacterized protein ImpA compare
Pf6N2E2_3792 +0.9 5.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5178 +0.9 2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_689 +0.9 2.2 FIG00956189: hypothetical protein compare
Pf6N2E2_5841 +0.9 1.5 GlcG protein compare
Pf6N2E2_204 +0.9 1.5 hypothetical protein compare
Pf6N2E2_4335 +0.9 5.5 Uncharacterized protein ImpB compare
Pf6N2E2_2106 +0.8 1.5 hypothetical protein compare
Pf6N2E2_2438 +0.8 2.0 hypothetical protein compare
Pf6N2E2_2371 +0.8 1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2592 +0.8 4.0 Flagellar motor switch protein FliG compare
Pf6N2E2_2352 +0.8 2.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_3108 +0.8 3.1 FIG00953405: hypothetical protein compare
Pf6N2E2_338 +0.8 2.2 Transcriptional regulator, AraC family compare
Pf6N2E2_4556 +0.8 2.8 FIG00953078: hypothetical protein compare
Pf6N2E2_2999 +0.8 2.5 probable tail fiber assembly protein compare
Pf6N2E2_5207 +0.8 1.3 hypothetical protein compare
Pf6N2E2_4338 +0.8 2.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3466 +0.8 2.3 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_2579 +0.8 4.6 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2583 +0.8 4.0 Flagellar motor switch protein FliM compare
Pf6N2E2_4348 +0.8 5.1 Autotransporter adhesin compare
Pf6N2E2_1099 +0.8 1.6 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3980 +0.8 5.9 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2578 +0.8 1.4 Flagellar biosynthesis protein FliR compare
Pf6N2E2_98 +0.8 2.1 putative transmembrane protein compare
Pf6N2E2_2477 +0.8 1.1 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5694 +0.7 4.8 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1735 +0.7 2.5 PhnB protein compare
Pf6N2E2_5774 +0.7 4.7 FIG00954549: hypothetical protein compare
Pf6N2E2_331 +0.7 2.5 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_445 +0.7 3.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4340 +0.7 3.4 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_4054 +0.7 2.7 Osmotically inducible protein C compare
Pf6N2E2_4339 +0.7 5.8 Uncharacterized protein ImpJ/VasE compare
Pf6N2E2_4963 +0.7 1.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_5695 +0.7 4.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2577 +0.7 5.3 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2591 +0.7 3.8 Flagellar assembly protein FliH compare
Pf6N2E2_4341 +0.7 6.4 IcmF-related protein compare
Pf6N2E2_5697 +0.7 6.0 Flagellar hook protein FlgE compare
Pf6N2E2_3529 +0.7 1.1 Toxin A compare
Pf6N2E2_5241 +0.7 2.1 Aminopeptidase N compare
Pf6N2E2_1312 +0.7 1.7 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_3095 +0.7 1.2 hypothetical protein compare
Pf6N2E2_2375 +0.7 2.4 Response regulator NasT compare
Pf6N2E2_2627 +0.7 4.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_3268 +0.7 4.3 Ribosome hibernation protein YhbH compare
Pf6N2E2_2869 +0.7 1.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2012 +0.7 1.5 hypothetical protein compare
Pf6N2E2_395 +0.7 2.4 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3612 +0.7 2.0 HflK protein compare
Pf6N2E2_4333 +0.7 4.1 Uncharacterized protein ImpD compare
Pf6N2E2_2626 +0.7 4.5 Flagellar L-ring protein FlgH compare
Pf6N2E2_5128 +0.6 2.1 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_4337 +0.6 4.8 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_384 +0.6 1.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2587 +0.6 5.3 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_4025 +0.6 1.2 hypothetical protein compare
Pf6N2E2_3738 +0.6 2.7 General secretion pathway protein L compare
Pf6N2E2_4329 +0.6 4.7 Protein ImpG/VasA compare
Pf6N2E2_5225 +0.6 4.7 Lipid A 3-O-deacylase compare
Pf6N2E2_1623 +0.6 3.0 Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_827 +0.6 1.9 probable dioxygenase compare
Pf6N2E2_3983 +0.6 3.7 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_1534 +0.6 1.4 Probable transmembrane protein compare
Pf6N2E2_3328 +0.6 1.7 transcriptional regulator compare
Pf6N2E2_2262 +0.6 1.4 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_1984 +0.6 2.6 probable exported protein STY4558 compare
Pf6N2E2_2223 +0.6 1.6 hypothetical protein compare
Pf6N2E2_5312 +0.6 1.2 FIG00964214: hypothetical protein compare
Pf6N2E2_482 +0.6 1.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_2590 +0.6 4.2 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_942 +0.6 1.3 Mll6465 protein compare
Pf6N2E2_924 +0.6 1.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1683 +0.6 1.6 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1034 +0.6 1.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_6059 +0.6 1.9 FIG008443: hypothetical protein compare
Pf6N2E2_5182 +0.6 3.8 Paraquat-inducible protein A compare
Pf6N2E2_4092 +0.6 1.7 FIG00954395: hypothetical protein compare
Pf6N2E2_3828 +0.6 2.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_5638 +0.6 2.2 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_719 +0.6 1.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2181 +0.6 1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2281 +0.6 1.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3634 +0.6 1.2 Transporter compare
Pf6N2E2_2440 +0.6 1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_546 +0.6 1.4 FIG00966904: hypothetical protein compare
Pf6N2E2_2576 +0.6 4.3 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_1110 +0.6 2.7 FIG00964414: hypothetical protein compare
Pf6N2E2_4546 +0.6 2.1 hypothetical protein compare
Pf6N2E2_3800 +0.6 3.2 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf6N2E2_4615 +0.6 1.4 type IV pili signal transduction protein PilI compare
Pf6N2E2_2682 +0.6 1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_4010 +0.6 2.7 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf6N2E2_1516 +0.6 1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4028 +0.6 3.8 Biofilm PGA synthesis auxiliary protein PgaD compare
Pf6N2E2_3122 +0.6 1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_5044 +0.6 1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1463 +0.5 1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4328 +0.5 4.0 Uncharacterized protein ImpH/VasB compare
Pf6N2E2_4334 +0.5 3.4 Uncharacterized protein ImpC compare
Pf6N2E2_5609 +0.5 2.4 DNA-binding response regulator ColR compare
Pf6N2E2_3864 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2602 +0.5 2.9 Flagellin protein FlaA compare
Pf6N2E2_2934 +0.5 0.9 lipoprotein, putative compare
Pf6N2E2_5181 +0.5 4.0 Paraquat-inducible protein A compare
Pf6N2E2_5256 +0.5 3.1 FIG137478: Hypothetical protein YbgI compare
Pf6N2E2_2573 +0.5 3.1 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_2623 +0.5 4.0 Flagellar hook-associated protein FlgK compare
Pf6N2E2_4052 +0.5 1.2 FIG00955481: hypothetical protein compare
Pf6N2E2_3362 +0.5 1.6 hypothetical protein compare
Pf6N2E2_2628 +0.5 2.1 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_3480 +0.5 1.1 Transcriptional regulator, ArsR family compare
Pf6N2E2_5785 +0.5 1.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3277 +0.5 1.2 FagA protein compare
Pf6N2E2_4347 +0.5 4.1 FIG00957151: hypothetical protein compare
Pf6N2E2_330 +0.5 2.6 Mesenchymal stem cell protein DSCD75 compare
Pf6N2E2_4719 +0.5 2.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_2572 +0.5 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_728 +0.5 2.0 Nitrate/nitrite transporter compare
Pf6N2E2_5392 +0.5 1.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_1743 +0.5 1.9 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_923 +0.5 1.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2300 +0.5 2.2 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2636 +0.5 1.4 FIG027190: Putative transmembrane protein compare
Pf6N2E2_6006 +0.5 2.4 L-rhamnose operon transcriptional activator RhaR compare
Pf6N2E2_5496 +0.5 1.8 FIG00953991: hypothetical protein compare
Pf6N2E2_2441 +0.5 2.6 putative ATP/GTP-binding protein compare
Pf6N2E2_2121 +0.5 1.4 hypothetical protein compare
Pf6N2E2_3799 +0.5 2.7 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
Pf6N2E2_1495 +0.5 2.0 Glutamate transport membrane-spanning protein compare
Pf6N2E2_6022 +0.5 1.8 StbE replicon stabilization toxin compare
Pf6N2E2_2302 +0.5 2.9 CAAX amino terminal protease family protein compare
Pf6N2E2_1128 +0.5 1.3 Two-component response regulator compare
Pf6N2E2_3624 +0.5 3.1 Flagellar motor rotation protein MotB compare
Pf6N2E2_3875 +0.5 1.0 FIG00953324: hypothetical protein compare
Pf6N2E2_5573 +0.5 2.3 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_92 +0.5 1.9 hypothetical protein compare
Pf6N2E2_927 +0.5 2.1 (AJ250023) putative polyketide synthase compare
Pf6N2E2_4318 +0.5 3.3 VgrG-3 protein compare
Pf6N2E2_733 +0.5 1.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_1177 +0.5 2.4 putative exported protein compare
Pf6N2E2_1577 +0.5 1.6 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_4344 +0.5 4.3 Serine/threonine protein kinase (EC 2.7.11.1) PpkA compare
Pf6N2E2_4708 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2285 +0.5 1.0 FIG00954079: hypothetical protein compare
Pf6N2E2_5642 +0.5 2.3 FIG00964654: hypothetical protein compare
Pf6N2E2_4397 +0.5 2.1 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_4305 +0.5 0.8 FIG00959590: hypothetical protein compare
Pf6N2E2_5771 +0.5 2.3 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1074 +0.5 1.8 FIG00953356: hypothetical protein compare
Pf6N2E2_6081 +0.5 1.8 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_5425 +0.5 0.4 hypothetical protein compare
Pf6N2E2_6060 +0.5 1.9 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_4332 +0.5 2.3 hypothetical protein compare
Pf6N2E2_855 +0.5 1.1 Transcriptional regulator, IclR family compare
Pf6N2E2_2585 +0.5 3.3 Flagellar hook-length control protein FliK compare
Pf6N2E2_4499 +0.5 0.9 protein of unknown function DUF86 compare
Pf6N2E2_146 +0.5 0.7 Transcriptional regulator, MarR family compare
Pf6N2E2_1033 +0.5 1.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_2406 +0.5 3.4 Periplasmic binding protein compare
Pf6N2E2_5640 +0.5 0.7 FIG00955597: hypothetical protein compare
Pf6N2E2_2563 +0.4 3.5 FIG00953562: hypothetical protein compare
Pf6N2E2_3134 +0.4 0.7 hypothetical protein compare
Pf6N2E2_1987 +0.4 1.0 hypothetical protein compare
Pf6N2E2_5455 +0.4 1.6 hypothetical protein compare
Pf6N2E2_3219 +0.4 1.3 hypothetical protein compare
Pf6N2E2_1040 +0.4 0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3761 +0.4 4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_909 +0.4 2.3 VrlR-like protein compare
Pf6N2E2_5689 +0.4 1.9 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_349 +0.4 1.6 hypothetical protein compare
Pf6N2E2_1451 +0.4 2.1 hypothetical protein compare
Pf6N2E2_1778 +0.4 1.6 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_5691 +0.4 2.6 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_4193 +0.4 3.4 Signal transduction histidine kinase compare
Pf6N2E2_2568 +0.4 2.4 Flagellar motor rotation protein MotA compare
Pf6N2E2_5865 +0.4 3.4 Chaperone protein HtpG compare
Pf6N2E2_2324 +0.4 1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_2754 +0.4 1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Glucose across organisms