Experiment set2IT001 for Caulobacter crescentus NA1000
L-Tryptophan nitrogen source
Group: nitrogen sourceMedia: M2_noNitrogen + L-Tryptophan (5 mM)
Culturing: Caulo_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.4 generations
By: Jayashree on 22-Mar-17
Media components: 1.74 g/L Disodium phosphate, 1.06 g/L Potassium phosphate monobasic, 20 mM D-Glucose, 0.5 mM Magnesium sulfate, 0.5 mM Calcium chloride, 0.01 mM Iron (II) sulfate heptahydrate, 0.008 mM EDTA
Growth plate: 1525 D2
Specific Phenotypes
For 9 genes in this experiment
For nitrogen source L-Tryptophan in Caulobacter crescentus NA1000
For nitrogen source L-Tryptophan across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Aromatic amino acid degradation | 2 |
| Bacterial Cell Division | 1 |
| Bacterial Cytoskeleton | 1 |
| Terminal cytochrome C oxidases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Tryptophan metabolism
- Oxidative phosphorylation
- Urea cycle and metabolism of amino groups
- Glycine, serine and threonine metabolism
- Arginine and proline metabolism
- Histidine metabolism
- Tyrosine metabolism
- Phenylalanine metabolism
- Alkaloid biosynthesis I
- Drug metabolism - cytochrome P450
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: