Experiment set2H48 for Dechlorosoma suillum PS

Compare to:

Anaerobic growth in rich media with nitrate electron acceptor

200 most important genes:

  gene name fitness t score description  
Dsui_3034 -5.0 -22.0 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent compare
Dsui_1460 -5.0 -9.0 cAMP-binding protein compare
Dsui_1176 -4.7 -8.7 periplasmic nitrate/nitrite reductase c-type cytochrome, NapC/NirT family compare
Dsui_1647 -4.7 -9.9 oxygen-independent coproporphyrinogen III oxidase compare
Dsui_1177 -4.6 -9.3 Ethylbenzene dehydrogenase compare
Dsui_3393 -4.3 -4.2 Kef-type K+ transport system, membrane component compare
Dsui_3102 -4.3 -3.0 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Dsui_3080 -4.2 -2.1 molecular chaperone GrpE (heat shock protein) compare
Dsui_1970 -4.1 -2.9 metalloendopeptidase-like membrane protein compare
Dsui_0401 -4.1 -2.8 nucleoside-diphosphate-sugar epimerase compare
Dsui_0004 -4.0 -7.1 molybdenum cofactor biosynthesis protein MoaC compare
Dsui_1576 -3.9 -2.7 dihydrolipoamide dehydrogenase compare
Dsui_2154 -3.9 -6.4 molybdopterin converting factor, large subunit compare
Dsui_0613 -3.8 -1.9 uncharacterized protein SCO1/SenC/PrrC compare
Dsui_3392 -3.8 -7.3 carboxylate-amine ligase, YbdK family compare
Dsui_2153 -3.7 -5.6 molybdopterin converting factor, subunit 1 compare
Dsui_2696 -3.6 -13.1 (protein-PII) uridylyltransferase compare
Dsui_1578 -3.5 -4.2 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_0992 -3.3 -2.0 putative membrane protein compare
Dsui_3110 -3.3 -6.6 nitric oxide reductase large subunit compare
Dsui_0963 -3.3 -7.6 collagenase-like protease compare
Dsui_1275 -3.2 -4.4 protein-export chaperone SecB compare
Dsui_3220 -3.2 -2.2 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_3081 -3.1 -2.1 chaperone protein DnaK compare
Dsui_1398 -3.1 -6.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Dsui_1402 -3.1 -3.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Dsui_3139 -3.1 -4.2 outer membrane assembly lipoprotein YfgL compare
Dsui_2152 -3.1 -4.2 molybdenum cofactor synthesis domain protein compare
Dsui_2151 -3.0 -3.5 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
Dsui_0508 -3.0 -14.4 periplasmic nitrate reductase, large subunit compare
Dsui_1577 -3.0 -2.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_1931 -3.0 -6.4 transcriptional regulator compare
Dsui_0964 -3.0 -3.6 putative lipid carrier protein compare
Dsui_3054 -2.9 -2.8 phosphate ABC transporter, permease protein PstA compare
Dsui_1928 -2.9 -5.2 cytochrome c, mono- and diheme variants family compare
Dsui_0507 -2.9 -3.4 uncharacterized protein involved in formation of periplasmic nitrate reductase compare
Dsui_1221 -2.9 -2.6 hypothetical protein compare
Dsui_1321 -2.9 -4.2 ABC-type uncharacterized transport system, permease component compare
Dsui_0745 -2.9 -2.0 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_1236 -2.9 -7.5 molybdenum cofactor synthesis domain protein compare
Dsui_0007 -2.9 -2.6 cold shock protein compare
Dsui_0509 -2.8 -7.3 MauM/NapG family ferredoxin-type protein compare
Dsui_0675 -2.8 -3.3 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_1403 -2.8 -2.8 putative NTP binding protein (contains STAS domain) compare
Dsui_3109 -2.8 -6.2 cytochrome c, mono- and diheme variants family compare
Dsui_3299 -2.7 -14.2 Peroxiredoxin compare
Dsui_3240 -2.7 -8.4 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_0962 -2.7 -11.8 collagenase-like protease compare
Dsui_3484 -2.6 -1.8 putative permease compare
Dsui_2816 -2.6 -4.6 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2499 -2.5 -2.6 MerE protein compare
Dsui_2189 -2.5 -3.7 acyl-CoA synthetase (NDP forming) compare
Dsui_1932 -2.5 -4.2 transcriptional regulator compare
Dsui_0099 -2.5 -3.5 putative periplasmic or secreted lipoprotein compare
Dsui_1400 -2.5 -5.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Dsui_1002 -2.4 -2.3 prolyl oligopeptidase family protein compare
Dsui_3305 -2.4 -13.8 parallel beta-helix repeat (two copies) compare
Dsui_1640 -2.3 -4.3 hypothetical protein compare
Dsui_3120 -2.3 -4.0 cAMP-binding protein compare
Dsui_2166 -2.2 -3.0 Fe2+-dicitrate sensor, membrane component compare
Dsui_3532 -2.2 -4.3 Protein of unknown function (DUF3106) compare
Dsui_1930 -2.2 -5.9 transcriptional regulator compare
Dsui_1682 -2.2 -2.7 biopolymer transport protein compare
Dsui_1401 -2.2 -5.1 surface lipoprotein compare
Dsui_0399 -2.2 -5.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_1399 -2.2 -4.8 conserved hypothetical integral membrane protein compare
Dsui_3319 -2.1 -5.5 uroporphyrin-III C-methyltransferase compare
Dsui_0465 -2.1 -2.2 ADP-heptose:LPS heptosyltransferase compare
Dsui_0564 -2.1 -6.7 molybdenum ABC transporter, ATP-binding protein compare
Dsui_2717 -2.1 -3.6 RNA polymerase-binding protein DksA compare
Dsui_1969 -2.1 -6.7 protein-L-isoaspartate and D-aspartate O-methyltransferase compare
Dsui_3302 -2.1 -7.2 ABC-type multidrug transport system, ATPase component compare
Dsui_1084 -2.1 -9.3 bacteriophage protein gp37 compare
Dsui_0650 -2.0 -3.8 hypothetical protein compare
Dsui_2673 -2.0 -3.1 hypothetical protein compare
Dsui_1929 -2.0 -7.2 Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein compare
Dsui_3300 -2.0 -10.7 ABC-2 type transporter compare
Dsui_2694 -2.0 -2.6 ribosomal protein S2 compare
Dsui_2032 -2.0 -2.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2745 -2.0 -2.7 methyl-accepting chemotaxis protein compare
Dsui_3301 -2.0 -9.0 NosL compare
Dsui_3521 -1.9 -5.6 membrane-fusion protein compare
Dsui_3523 -1.9 -3.4 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2560 -1.9 -2.8 zonula occludens toxin compare
Dsui_3303 -1.9 -9.0 ferredoxin-type protein, NapH/MauN family compare
Dsui_0562 -1.9 -9.8 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Dsui_0477 -1.9 -2.7 tol-pal system protein YbgF compare
Dsui_0706 -1.9 -1.8 hypothetical protein compare
Dsui_3306 -1.9 -9.0 hypothetical protein compare
Dsui_0608 -1.9 -5.6 nucleoside-diphosphate-sugar epimerase compare
Dsui_0510 -1.9 -5.2 ferredoxin-type protein, NapH/MauN family compare
Dsui_1312 -1.8 -3.9 NTP pyrophosphohydrolase compare
Dsui_1978 -1.8 -1.5 putative lipoprotein compare
Dsui_0520 -1.8 -7.8 transcriptional regulator compare
Dsui_3318 -1.8 -9.1 cytochrome c, mono- and diheme variants family compare
Dsui_1855 -1.8 -2.0 hypothetical protein compare
Dsui_2045 -1.8 -1.9 hypothetical protein compare
Dsui_2767 -1.8 -2.6 glutaredoxin-like protein compare
Dsui_2496 -1.8 -2.3 Membrane transport protein MerF compare
Dsui_1170 -1.7 -1.2 heme exporter protein CcmD compare
Dsui_0563 -1.7 -9.0 molybdate ABC transporter, permease protein compare
Dsui_3126 -1.7 -5.4 heme d1 biosynthesis radical SAM protein NirJ compare
Dsui_3304 -1.7 -9.2 NADH:ubiquinone oxidoreductase chain I-like protein compare
Dsui_1827 -1.7 -1.5 hypothetical protein compare
Dsui_2666 -1.7 -2.5 putative transcriptional regulator compare
Dsui_2687 -1.7 -5.9 RIP metalloprotease RseP compare
Dsui_2150 -1.7 -2.6 hypothetical protein compare
Dsui_3169 -1.6 -3.9 putative metal-binding protein compare
Dsui_1022 -1.6 -5.7 cell division protein compare
Dsui_1944 -1.6 -7.9 integration host factor, beta subunit compare
Dsui_2454 -1.6 -3.9 Positive regulator of sigma E activity compare
Dsui_2668 -1.6 -3.1 putative phosphatase compare
Dsui_2882 -1.6 -3.1 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_2368 -1.6 -3.8 serine O-acetyltransferase compare
Dsui_1642 -1.6 -5.8 hypothetical protein compare
Dsui_2427 -1.6 -5.8 molybdenum cofactor biosynthesis protein A compare
Dsui_0744 -1.6 -3.1 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_0500 -1.6 -3.2 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_1968 -1.5 -6.1 5''/3''-nucleotidase SurE compare
Dsui_1198 -1.5 -5.4 apolipoprotein N-acyltransferase compare
Dsui_3117 -1.5 -2.6 hypothetical protein compare
Dsui_2306 -1.5 -2.0 transcriptional regulator compare
Dsui_3520 -1.5 -9.0 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_1947 -1.5 -1.4 nucleotide sugar dehydrogenase compare
Dsui_1377 -1.5 -5.4 phasin family protein compare
Dsui_0460 -1.5 -2.0 ADP-heptose:LPS heptosyltransferase compare
Dsui_2787 -1.5 -4.7 membrane carboxypeptidase/penicillin-binding protein compare
Dsui_0003 -1.5 -3.5 putative Zn-dependent protease compare
Dsui_0725 -1.5 -2.5 putative hydrolase of the alpha/beta superfamily compare
Dsui_1541 -1.4 -4.3 cytochrome c553 compare
Dsui_1271 -1.4 -7.1 membrane-bound metallopeptidase compare
Dsui_2466 -1.4 -1.3 ATP dependent DNA ligase-like protein compare
Dsui_2126 -1.4 -1.2 alanine dehydrogenase compare
Dsui_1528 -1.4 -5.5 signal transduction histidine kinase compare
Dsui_3096 -1.4 -4.0 NADH dehydrogenase, FAD-containing subunit compare
Dsui_1325 -1.4 -3.2 ADP-ribose pyrophosphatase compare
Dsui_2981 -1.4 -0.9 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_0704 -1.4 -7.4 RNA polymerase sigma-54 factor compare
Dsui_0193 -1.4 -4.7 putative phage protein, putative large terminase compare
Dsui_1061 -1.3 -6.7 membrane-bound lytic murein transglycosylase compare
Dsui_3005 -1.3 -4.5 transcription elongation factor GreB compare
Dsui_2697 -1.3 -3.5 peptide deformylase compare
Dsui_1025 -1.3 -4.2 putative Zn-dependent peptidase compare
Dsui_2327 -1.3 -3.6 putative toxin-antitoxin system toxin component, PIN family compare
Dsui_2500 -1.3 -4.6 site-specific recombinase, DNA invertase Pin compare
Dsui_1356 -1.3 -1.6 hypothetical protein compare
Dsui_3161 -1.3 -4.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0434 -1.3 -2.7 ribonuclease, Rne/Rng family compare
Dsui_2678 -1.3 -6.2 hypothetical protein compare
Dsui_3396 -1.3 -3.7 transcriptional regulator compare
Dsui_1670 -1.3 -2.1 cytochrome c peroxidase compare
Dsui_2172 -1.3 -1.7 transcriptional regulator compare
Dsui_3309 -1.3 -9.1 nitrous oxide reductase compare
Dsui_2364 -1.3 -4.3 ABC-type sugar transport system, periplasmic component compare
Dsui_0703 -1.2 -4.6 ribosomal subunit interface protein compare
Dsui_2272 -1.2 -2.4 hypothetical protein compare
Dsui_3133 -1.2 -1.2 hypothetical protein compare
Dsui_3125 -1.2 -6.1 cytochrome c, mono- and diheme variants family compare
Dsui_3115 -1.2 -2.9 hypothetical protein compare
Dsui_1759 -1.2 -2.8 flagellar hook-basal body complex protein FliE compare
Dsui_0255 -1.2 -1.1 hypothetical protein compare
Dsui_0893 -1.2 -2.5 rare lipoprotein A compare
Dsui_1023 -1.2 -7.4 putative ATPase involved in cell division compare
Dsui_2085 -1.2 -2.5 NADPH-dependent FMN reductase compare
Dsui_3327 -1.2 -1.9 cytochrome b compare
Dsui_1119 -1.2 -3.8 glutathione peroxidase compare
Dsui_1041 -1.2 -4.6 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase compare
Dsui_1579 -1.2 -5.3 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_0810 -1.2 -4.7 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Dsui_1026 -1.2 -3.0 putative Zn-dependent peptidase compare
Dsui_3257 -1.2 -4.9 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities compare
Dsui_1408 -1.1 -2.0 NifZ domain-containing protein compare
Dsui_1126 -1.1 -7.3 outer membrane receptor protein compare
Dsui_3482 -1.1 -5.9 Na+/H+ dicarboxylate symporter compare
Dsui_2752 -1.1 -1.7 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_2037 -1.1 -3.7 putative alpha/beta hydrolase compare
Dsui_2549 -1.1 -4.0 hypothetical protein compare
Dsui_0125 -1.1 -3.3 NAD-dependent aldehyde dehydrogenase compare
Dsui_3307 -1.1 -4.6 cytochrome c553 compare
Dsui_2386 -1.1 -1.9 pyruvate-formate lyase-activating enzyme compare
Dsui_2617 -1.1 -1.4 DNA recombination-dependent growth factor C compare
Dsui_1817 -1.1 -3.1 anaerobic dehydrogenase, typically selenocysteine-containing compare
Dsui_0469 -1.1 -1.2 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_3446 -1.1 -5.1 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase compare
Dsui_0530 -1.1 -2.8 ABC-type Fe3+-siderophore transport system, permease component compare
Dsui_0811 -1.1 -4.0 hypothetical protein compare
Dsui_2519 -1.1 -4.7 methyl-accepting chemotaxis protein compare
Dsui_3072 -1.1 -2.8 DNA repair protein RecN compare
Dsui_0195 -1.1 -4.7 Caudovirus prohead protease compare
Dsui_1619 -1.1 -2.9 putative membrane-associated, metal-dependent hydrolase compare
Dsui_3207 -1.1 -1.4 ankyrin repeat-containing protein compare
Dsui_1839 -1.1 -2.0 hypothetical protein compare
Dsui_2526 -1.1 -3.3 site-specific recombinase, DNA invertase Pin compare
Dsui_2498 -1.1 -2.1 mercuric resistance transcriptional repressor protein MerD compare
Dsui_0024 -1.1 -1.8 cytochrome c556 compare
Dsui_1945 -1.1 -4.6 uncharacterized integral membrane protein compare
Dsui_2799 -1.1 -3.8 oligopeptide/dipeptide ABC transporter, ATP-binding protein compare
Dsui_3069 -1.1 -1.7 putative membrane protein compare
Dsui_2127 -1.1 -1.7 flavodoxin reductase family protein compare
Dsui_0567 -1.1 -1.7 molybdenum-pterin binding domain protein compare


Specific Phenotypes

For 3 genes in this experiment

For anaerobic Sodium nitrate in Dechlorosoma suillum PS

For anaerobic Sodium nitrate across organisms