Experiment set2H48 for Marinobacter adhaerens HP15
marine broth with D-Cycloserine 0.032 mg/ml
Group: stressMedia: marine_broth_2216 + D-Cycloserine (0.032 mg/ml)
Culturing: Marino_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=200 rpm
By: Jordan on 9/10/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 683 D3,D4
Specific Phenotypes
For 18 genes in this experiment
For stress D-Cycloserine in Marinobacter adhaerens HP15
For stress D-Cycloserine across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| aerobic respiration III (alternative oxidase pathway) | 3 | 3 | 2 |
| NADH to cytochrome bd oxidase electron transfer I | 2 | 1 | 1 |
| NADH to cytochrome bo oxidase electron transfer I | 2 | 1 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| NAD(P)/NADPH interconversion | 6 | 3 | 1 |
| Fe(II) oxidation | 6 | 3 | 1 |
| L-lysine biosynthesis I | 9 | 9 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| aspartate superpathway | 25 | 23 | 1 |