Experiment set2H47 for Dechlorosoma suillum PS

Compare to:

Anaerobic growth in rich media with nitrate electron acceptor

200 most important genes:

  gene name fitness t score description  
Dsui_3034 -4.9 -24.7 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent compare
Dsui_0004 -4.7 -6.4 molybdenum cofactor biosynthesis protein MoaC compare
Dsui_1176 -4.7 -10.1 periplasmic nitrate/nitrite reductase c-type cytochrome, NapC/NirT family compare
Dsui_1460 -4.7 -8.9 cAMP-binding protein compare
Dsui_1647 -4.6 -9.7 oxygen-independent coproporphyrinogen III oxidase compare
Dsui_1177 -4.4 -9.4 Ethylbenzene dehydrogenase compare
Dsui_0507 -4.4 -3.0 uncharacterized protein involved in formation of periplasmic nitrate reductase compare
Dsui_2153 -4.3 -5.8 molybdopterin converting factor, subunit 1 compare
Dsui_3102 -4.3 -2.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Dsui_0401 -4.0 -2.7 nucleoside-diphosphate-sugar epimerase compare
Dsui_3392 -4.0 -6.1 carboxylate-amine ligase, YbdK family compare
Dsui_0007 -4.0 -2.7 cold shock protein compare
Dsui_2152 -3.9 -3.8 molybdenum cofactor synthesis domain protein compare
Dsui_3240 -3.9 -7.9 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_0964 -3.9 -6.0 putative lipid carrier protein compare
Dsui_1576 -3.8 -2.6 dihydrolipoamide dehydrogenase compare
Dsui_1321 -3.8 -8.1 ABC-type uncharacterized transport system, permease component compare
Dsui_1970 -3.7 -3.6 metalloendopeptidase-like membrane protein compare
Dsui_1578 -3.6 -3.5 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_2189 -3.6 -2.5 acyl-CoA synthetase (NDP forming) compare
Dsui_3110 -3.5 -6.7 nitric oxide reductase large subunit compare
Dsui_2154 -3.5 -6.2 molybdopterin converting factor, large subunit compare
Dsui_0508 -3.4 -14.7 periplasmic nitrate reductase, large subunit compare
Dsui_2696 -3.3 -12.0 (protein-PII) uridylyltransferase compare
Dsui_1170 -3.3 -1.7 heme exporter protein CcmD compare
Dsui_1978 -3.2 -2.2 putative lipoprotein compare
Dsui_0510 -3.2 -5.4 ferredoxin-type protein, NapH/MauN family compare
Dsui_3220 -3.1 -2.1 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_3081 -3.1 -2.1 chaperone protein DnaK compare
Dsui_3393 -3.1 -4.6 Kef-type K+ transport system, membrane component compare
Dsui_3299 -3.0 -15.0 Peroxiredoxin compare
Dsui_1398 -2.9 -6.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Dsui_1930 -2.9 -7.2 transcriptional regulator compare
Dsui_1932 -2.9 -4.4 transcriptional regulator compare
Dsui_0745 -2.8 -1.9 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_3109 -2.7 -6.0 cytochrome c, mono- and diheme variants family compare
Dsui_3120 -2.7 -4.1 cAMP-binding protein compare
Dsui_1400 -2.7 -7.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Dsui_1931 -2.7 -6.3 transcriptional regulator compare
Dsui_1403 -2.7 -2.7 putative NTP binding protein (contains STAS domain) compare
Dsui_0499 -2.7 -2.6 DNA-directed RNA polymerase, omega subunit compare
Dsui_3126 -2.7 -6.4 heme d1 biosynthesis radical SAM protein NirJ compare
Dsui_2673 -2.6 -4.0 hypothetical protein compare
Dsui_0963 -2.6 -7.1 collagenase-like protease compare
Dsui_0962 -2.6 -9.6 collagenase-like protease compare
Dsui_0509 -2.6 -7.2 MauM/NapG family ferredoxin-type protein compare
Dsui_0990 -2.6 -1.3 putative P-loop-containing kinase compare
Dsui_0564 -2.5 -6.9 molybdenum ABC transporter, ATP-binding protein compare
Dsui_1084 -2.5 -10.3 bacteriophage protein gp37 compare
Dsui_3080 -2.5 -1.7 molecular chaperone GrpE (heat shock protein) compare
Dsui_0399 -2.4 -5.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_1399 -2.4 -6.5 conserved hypothetical integral membrane protein compare
Dsui_0675 -2.4 -2.6 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_1381 -2.4 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_2687 -2.3 -7.0 RIP metalloprotease RseP compare
Dsui_2717 -2.3 -3.7 RNA polymerase-binding protein DksA compare
Dsui_1929 -2.2 -7.3 Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein compare
Dsui_3302 -2.2 -6.4 ABC-type multidrug transport system, ATPase component compare
Dsui_1969 -2.2 -7.4 protein-L-isoaspartate and D-aspartate O-methyltransferase compare
Dsui_3524 -2.2 -4.6 signal transduction histidine kinase compare
Dsui_3318 -2.2 -9.9 cytochrome c, mono- and diheme variants family compare
Dsui_1401 -2.2 -4.8 surface lipoprotein compare
Dsui_2402 -2.2 -1.5 hypothetical protein compare
Dsui_1928 -2.1 -4.5 cytochrome c, mono- and diheme variants family compare
Dsui_3054 -2.1 -2.2 phosphate ABC transporter, permease protein PstA compare
Dsui_1236 -2.1 -6.4 molybdenum cofactor synthesis domain protein compare
Dsui_1577 -2.1 -2.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_0252 -2.1 -2.3 TIGR00252 family protein compare
Dsui_1947 -2.1 -1.4 nucleotide sugar dehydrogenase compare
Dsui_2086 -2.0 -2.7 cytochrome c compare
Dsui_0174 -2.0 -2.3 hypothetical protein compare
Dsui_3305 -2.0 -9.8 parallel beta-helix repeat (two copies) compare
Dsui_3532 -2.0 -5.0 Protein of unknown function (DUF3106) compare
Dsui_0255 -2.0 -1.3 hypothetical protein compare
Dsui_1026 -2.0 -4.1 putative Zn-dependent peptidase compare
Dsui_0608 -2.0 -4.7 nucleoside-diphosphate-sugar epimerase compare
Dsui_3521 -1.9 -5.3 membrane-fusion protein compare
Dsui_0992 -1.9 -2.2 putative membrane protein compare
Dsui_2767 -1.9 -2.5 glutaredoxin-like protein compare
Dsui_3306 -1.9 -9.0 hypothetical protein compare
Dsui_2745 -1.9 -2.7 methyl-accepting chemotaxis protein compare
Dsui_0563 -1.9 -9.0 molybdate ABC transporter, permease protein compare
Dsui_3300 -1.8 -9.5 ABC-2 type transporter compare
Dsui_3457 -1.8 -1.7 K+ transporter compare
Dsui_0465 -1.8 -2.7 ADP-heptose:LPS heptosyltransferase compare
Dsui_0862 -1.8 -2.5 hypothetical protein compare
Dsui_2151 -1.8 -2.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
Dsui_3523 -1.8 -3.3 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1629 -1.8 -2.0 Cbb3-type cytochrome oxidase, subunit 3 compare
Dsui_2799 -1.7 -4.9 oligopeptide/dipeptide ABC transporter, ATP-binding protein compare
Dsui_0434 -1.7 -3.1 ribonuclease, Rne/Rng family compare
Dsui_0562 -1.7 -7.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Dsui_3303 -1.7 -9.6 ferredoxin-type protein, NapH/MauN family compare
Dsui_3467 -1.7 -2.2 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_1314 -1.7 -1.9 guanyl-specific ribonuclease Sa compare
Dsui_1402 -1.7 -2.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Dsui_3304 -1.6 -9.8 NADH:ubiquinone oxidoreductase chain I-like protein compare
Dsui_3139 -1.6 -3.2 outer membrane assembly lipoprotein YfgL compare
Dsui_2727 -1.6 -2.9 hypothetical protein compare
Dsui_1325 -1.6 -3.4 ADP-ribose pyrophosphatase compare
Dsui_0725 -1.6 -2.8 putative hydrolase of the alpha/beta superfamily compare
Dsui_0704 -1.6 -7.6 RNA polymerase sigma-54 factor compare
Dsui_0520 -1.6 -6.8 transcriptional regulator compare
Dsui_1994 -1.6 -1.8 NADPH-dependent FMN reductase compare
Dsui_2158 -1.5 -1.7 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Dsui_3301 -1.5 -6.7 NosL compare
Dsui_3520 -1.5 -8.3 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_0459 -1.5 -2.4 DNA polymerase I compare
Dsui_2259 -1.5 -1.8 hypothetical protein compare
Dsui_0099 -1.5 -2.0 putative periplasmic or secreted lipoprotein compare
Dsui_1968 -1.5 -6.2 5''/3''-nucleotidase SurE compare
Dsui_3319 -1.5 -4.2 uroporphyrin-III C-methyltransferase compare
Dsui_2094 -1.5 -2.6 putative autotransporter protein compare
Dsui_2933 -1.5 -2.6 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_1360 -1.5 -3.4 hypothetical protein compare
Dsui_1530 -1.5 -1.4 hypothetical protein compare
Dsui_1528 -1.5 -6.5 signal transduction histidine kinase compare
Dsui_3097 -1.4 -2.3 O-6-methylguanine DNA methyltransferase compare
Dsui_1894 -1.4 -2.7 E3 Ubiquitin ligase compare
Dsui_1377 -1.4 -4.2 phasin family protein compare
Dsui_2651 -1.4 -1.9 ankyrin repeat-containing protein compare
Dsui_2427 -1.4 -6.1 molybdenum cofactor biosynthesis protein A compare
Dsui_2047 -1.4 -2.9 chromate transporter, chromate ion transporter family compare
Dsui_2698 -1.4 -3.5 purine nucleoside phosphorylase compare
Dsui_0687 -1.4 -2.2 Protein of unknown function (DUF2905) compare
Dsui_2454 -1.4 -3.8 Positive regulator of sigma E activity compare
Dsui_1221 -1.4 -4.3 hypothetical protein compare
Dsui_2126 -1.4 -1.8 alanine dehydrogenase compare
Dsui_2348 -1.4 -2.1 hypothetical protein compare
Dsui_2981 -1.4 -0.9 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_1408 -1.4 -2.2 NifZ domain-containing protein compare
Dsui_1022 -1.4 -4.9 cell division protein compare
Dsui_2085 -1.4 -2.5 NADPH-dependent FMN reductase compare
Dsui_0650 -1.4 -2.8 hypothetical protein compare
Dsui_2466 -1.4 -2.0 ATP dependent DNA ligase-like protein compare
Dsui_1271 -1.3 -6.0 membrane-bound metallopeptidase compare
Dsui_2306 -1.3 -2.3 transcriptional regulator compare
Dsui_1275 -1.3 -1.7 protein-export chaperone SecB compare
Dsui_3169 -1.3 -2.7 putative metal-binding protein compare
Dsui_2678 -1.3 -7.2 hypothetical protein compare
Dsui_1235 -1.3 -2.3 hypothetical protein compare
Dsui_0025 -1.3 -1.9 hypothetical protein compare
Dsui_2277 -1.3 -2.4 Rhs element Vgr protein compare
Dsui_2007 -1.3 -1.6 putative solute:sodium symporter small subunit compare
Dsui_3115 -1.3 -3.2 hypothetical protein compare
Dsui_2694 -1.3 -2.0 ribosomal protein S2 compare
Dsui_1642 -1.3 -5.2 hypothetical protein compare
Dsui_0003 -1.3 -2.9 putative Zn-dependent protease compare
Dsui_1682 -1.3 -2.0 biopolymer transport protein compare
Dsui_1944 -1.3 -6.4 integration host factor, beta subunit compare
Dsui_1537 -1.3 -1.8 DNA repair protein radc compare
Dsui_1198 -1.3 -4.7 apolipoprotein N-acyltransferase compare
Dsui_1848 -1.3 -1.7 arsenical-resistance protein compare
Dsui_1004 -1.3 -0.8 conserved protein of DIM6/NTAB family compare
Dsui_1388 -1.2 -3.2 hypothetical protein compare
Dsui_2368 -1.2 -3.2 serine O-acetyltransferase compare
Dsui_0726 -1.2 -3.1 ferredoxin compare
Dsui_0623 -1.2 -2.0 putative lipoprotein involved in nitrous oxide reduction compare
Dsui_2034 -1.2 -2.1 DNA gyrase inhibitor compare
Dsui_1061 -1.2 -7.3 membrane-bound lytic murein transglycosylase compare
Dsui_2228 -1.2 -2.4 Zn-dependent alcohol dehydrogenase compare
Dsui_3446 -1.2 -4.4 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase compare
Dsui_1759 -1.2 -2.6 flagellar hook-basal body complex protein FliE compare
Dsui_0180 -1.2 -2.1 hypothetical protein compare
Dsui_3231 -1.2 -2.8 hypothetical protein compare
Dsui_0477 -1.2 -2.2 tol-pal system protein YbgF compare
Dsui_0202 -1.2 -2.1 hypothetical protein compare
Dsui_1229 -1.2 -3.8 Zn-dependent oxidoreductase, NADPH:quinone reductase compare
Dsui_2599 -1.2 -2.5 hypothetical protein compare
Dsui_0500 -1.2 -2.6 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2150 -1.2 -3.1 hypothetical protein compare
Dsui_1025 -1.2 -3.7 putative Zn-dependent peptidase compare
Dsui_2046 -1.2 -2.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2549 -1.2 -4.5 hypothetical protein compare
Dsui_3508 -1.2 -1.1 exodeoxyribonuclease VII, small subunit compare
Dsui_3005 -1.2 -4.8 transcription elongation factor GreB compare
Dsui_2816 -1.2 -3.3 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_0846 -1.2 -3.9 glucose-inhibited division protein A compare
Dsui_3133 -1.2 -1.1 hypothetical protein compare
Dsui_3482 -1.1 -6.2 Na+/H+ dicarboxylate symporter compare
Dsui_2740 -1.1 -2.3 putative integral membrane protein compare
Dsui_0177 -1.1 -2.2 hypothetical protein compare
Dsui_3026 -1.1 -1.9 hydrogenase maturation protease compare
Dsui_3309 -1.1 -8.3 nitrous oxide reductase compare
Dsui_1893 -1.1 -2.0 putative membrane protein compare
Dsui_2326 -1.1 -1.1 hypothetical protein compare
Dsui_2226 -1.1 -2.7 DNA-binding domain-containing protein, AraC-type compare
Dsui_2702 -1.1 -2.1 cell division protein compare
Dsui_0860 -1.1 -3.2 hypothetical protein compare
Dsui_0810 -1.1 -5.0 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Dsui_0625 -1.1 -2.9 putative metal-sulfur cluster biosynthetic enzyme compare
Dsui_2699 -1.1 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
Dsui_3415 -1.1 -4.9 FAD/FMN-dependent dehydrogenase compare
Dsui_1599 -1.1 -5.2 putative enzyme of heme biosynthesis compare
Dsui_3207 -1.1 -1.4 ankyrin repeat-containing protein compare
Dsui_3414 -1.1 -4.2 FAD/FMN-dependent dehydrogenase compare
Dsui_2098 -1.0 -0.9 hypothetical protein compare
Dsui_2064 -1.0 -4.1 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Dsui_0193 -1.0 -3.1 putative phage protein, putative large terminase compare
Dsui_2801 -1.0 -4.0 ABC-type dipeptide/oligopeptide/nickel transport system, permease component compare


Specific Phenotypes

For 4 genes in this experiment

For anaerobic Sodium nitrate in Dechlorosoma suillum PS

For anaerobic Sodium nitrate across organisms