Experiment set2H46 for Phaeobacter inhibens DSM 17395
marine broth with methylglyoxal 0.008 vol%
Group: stressMedia: marine_broth_2216 + methylglyoxal (0.008 vol%)
Culturing: Phaeo_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jordan on 8/5/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 616 B3,B4
Specific Phenotypes
For 10 genes in this experiment
For stress methylglyoxal in Phaeobacter inhibens DSM 17395
For stress methylglyoxal across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, UvrABC system | 3 |
| DNA-replication | 2 |
| Cysteine Biosynthesis | 1 |
| DNA repair, bacterial RecFOR pathway | 1 |
| Glutathione: Non-redox reactions | 1 |
| Methylglyoxal Metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| methylglyoxal degradation VIII | 3 | 3 | 1 |
| methylglyoxal degradation I | 3 | 2 | 1 |
| superpathway of methylglyoxal degradation | 8 | 3 | 1 |