Experiment set2H45 for Shewanella amazonensis SB2B

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Minimal media with Tween 20 as carbon source

200 most detrimental genes:

  gene name fitness t score description  
Sama_2439 +5.1 36.0 L-lactate permease, putative (RefSeq) compare
Sama_1909 +2.4 9.1 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_1383 +2.2 18.8 prolyl oligopeptidase family protein (RefSeq) compare
Sama_1542 +2.1 11.7 response regulator receiver protein (RefSeq) compare
Sama_1541 +2.0 15.1 sensor protein PhoQ (RefSeq) compare
Sama_0170 +1.9 7.0 general secretion pathway protein E (RefSeq) compare
Sama_2265 +1.8 12.5 transcriptional activator rfaH, putative (RefSeq) compare
Sama_0173 +1.8 6.2 general secretion pathway protein H (RefSeq) compare
Sama_0169 +1.8 7.8 type II and III secretion system protein (RefSeq) compare
Sama_0792 +1.7 13.4 TetR family transcriptional regulator (RefSeq) compare
Sama_3200 +1.7 13.2 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_0320 +1.6 7.0 tRNA nucleotidyltransferase (RefSeq) compare
Sama_3018 sspA +1.6 10.9 stringent starvation protein A (RefSeq) compare
Sama_0179 +1.5 10.9 general secretion pathway protein N (RefSeq) compare
Sama_3267 +1.5 5.4 TetR family transcriptional regulator (RefSeq) compare
Sama_3382 +1.5 11.2 hypothetical protein (RefSeq) compare
Sama_3290 +1.4 10.8 putative acyltransferase (RefSeq) compare
Sama_3089 +1.4 10.0 ribosomal subunit interface protein (RefSeq) compare
Sama_3377 +1.3 10.0 hypothetical protein (RefSeq) compare
Sama_1868 +1.3 4.7 hypothetical protein (RefSeq) compare
Sama_3381 +1.3 8.6 hypothetical protein (RefSeq) compare
Sama_3391 +1.3 10.3 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq) conserved
Sama_0171 +1.2 3.9 general secretion pathway protein F (RefSeq) compare
Sama_2163 +1.2 10.8 M16 family peptidase (RefSeq) compare
Sama_0168 +1.2 5.6 general secretion pathway protein C (RefSeq) compare
Sama_0367 +1.2 4.1 prepilin peptidase (RefSeq) compare
Sama_3429 +1.1 8.7 outer membrane protein, putative (RefSeq) compare
Sama_0176 +1.1 3.3 general secretion pathway protein K (RefSeq) compare
Sama_3383 +1.1 6.7 thioester dehydrase family protein (RefSeq) compare
Sama_3245 +1.1 7.7 urease accessory protein UreJ (RefSeq) compare
Sama_3384 +1.0 8.5 glycosyl transferase, group 2 family protein (RefSeq) compare
Sama_2162 +1.0 4.9 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_3390 +1.0 7.0 hypothetical protein (RefSeq) compare
Sama_3386 +1.0 7.9 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Sama_3378 +1.0 8.3 acyltransferase family protein (RefSeq) compare
Sama_0023 +1.0 8.2 hypothetical protein (RefSeq) compare
Sama_3392 +1.0 6.3 thioester dehydrase family protein (RefSeq) compare
Sama_3387 +1.0 6.1 hypothetical protein (RefSeq) compare
Sama_0831 +1.0 4.5 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Sama_1805 +0.9 5.3 aromatic amino acid aminotransferase (RefSeq) compare
Sama_3393 fabG +0.9 7.1 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Sama_3394 +0.9 8.2 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq) compare
Sama_3388 +0.9 7.2 hypothetical protein (RefSeq) compare
Sama_2260 +0.9 5.2 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) compare
Sama_2259 +0.9 3.9 MviM protein (RefSeq) compare
Sama_3170 metL +0.9 7.5 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_1756 +0.9 2.6 MarR family transcriptional regulator (RefSeq) compare
Sama_1085 +0.8 3.9 hypothetical protein (RefSeq) compare
Sama_3385 +0.8 6.6 histidine ammonia-lyase (RefSeq) compare
Sama_3193 +0.8 3.9 peptidyl-tRNA hydrolase domain protein (RefSeq) compare
Sama_0022 +0.8 6.7 Urea carboxylase (RefSeq) compare
Sama_3379 +0.8 4.8 acyl carrier protein, putative (RefSeq) compare
Sama_1119 +0.8 4.5 phosphopantetheinyl transferase-like protein (RefSeq) compare
Sama_2052 +0.8 2.7 hypothetical protein (RefSeq) compare
Sama_0175 +0.8 3.1 general secretion pathway protein J (RefSeq) compare
Sama_1446 +0.7 4.0 response regulator receiver protein (RefSeq) compare
Sama_3333 +0.7 3.0 hypothetical protein (RefSeq) compare
Sama_3022 +0.7 3.3 hflC protein (RefSeq) compare
Sama_0587 +0.7 4.1 PepSY-associated TM helix (RefSeq) compare
Sama_1862 +0.7 4.1 hemolysin III family channel protein (RefSeq) compare
Sama_1352 +0.7 1.6 hypothetical protein (RefSeq) compare
Sama_1649 +0.7 1.7 glucose-specific PTS system component (RefSeq) compare
Sama_1387 +0.7 2.3 hypothetical protein (RefSeq) compare
Sama_2461 +0.7 1.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_0605 +0.7 3.9 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Sama_2815 +0.7 5.6 phosphotransferase (RefSeq) compare
Sama_0375 aceE +0.6 4.4 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Sama_1326 +0.6 4.1 beta-hexosaminidase (RefSeq) compare
Sama_2059 +0.6 4.8 isocitrate dehydrogenase (NADP(+)) (RefSeq) compare
Sama_2250 +0.6 2.4 acetoacetyl-CoA reductase (RefSeq) compare
Sama_1479 +0.6 1.5 hypothetical protein (RefSeq) compare
Sama_1906 +0.6 5.1 HlyD family-like protein (RefSeq) compare
Sama_1888 +0.6 4.4 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_0628 +0.6 3.3 MarR family transcriptional regulator (RefSeq) compare
Sama_1354 +0.6 3.1 hypothetical protein (RefSeq) compare
Sama_0848 anmK +0.6 5.1 anhydro-N-acetylmuramic acid kinase (RefSeq) compare
Sama_1905 +0.6 5.2 AcrB/AcrD/AcrF family protein (RefSeq) compare
Sama_0671 +0.6 3.4 arginine repressor (RefSeq) compare
Sama_2103 +0.6 2.9 putative 5-carboxymethyl-2-hydroxymuconate D-isomerase (RefSeq) compare
Sama_3323 +0.6 2.3 hypothetical protein (RefSeq) compare
Sama_R0027 +0.6 1.4 5S ribosomal RNA (RefSeq) compare
Sama_3380 +0.6 1.7 acyl carrier protein (RefSeq) compare
Sama_0588 +0.6 2.9 FMN-binding (RefSeq) compare
Sama_2235 +0.6 3.9 NAD dependent epimerase/dehydratase family protein (RefSeq) compare
Sama_0645 +0.6 3.3 hypothetical protein (RefSeq) compare
Sama_1996 +0.6 2.3 diacylglycerol kinase (RefSeq) compare
Sama_2429 +0.6 3.4 DNA-binding transcriptional activator GcvA (RefSeq) compare
Sama_1349 +0.5 1.8 hypothetical protein (RefSeq) compare
Sama_1132 +0.5 2.7 flavodoxin (RefSeq) compare
Sama_1680 +0.5 2.9 thioredoxin family protein (RefSeq) compare
Sama_1959 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_0956 +0.5 4.5 phosphoglucosamine mutase (RefSeq) compare
Sama_2069 +0.5 1.0 MarR family transcriptional regulator (RefSeq) compare
Sama_0184 +0.5 4.5 cysQ protein (RefSeq) compare
Sama_2367 +0.5 3.4 fimbrial biogenesis and twitching motility protein, putative (RefSeq) compare
Sama_3624 +0.5 4.8 protease, putative (RefSeq) compare
Sama_2620 +0.5 1.5 hypothetical protein (RefSeq) compare
Sama_2563 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_0121 +0.5 2.7 molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq) compare
Sama_1958 +0.5 1.8 hypothetical protein (RefSeq) compare
Sama_1752 +0.5 3.1 hypothetical protein (RefSeq) compare
Sama_3094 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_2885 +0.5 1.8 hypothetical protein (RefSeq) compare
Sama_1883 +0.5 3.6 hypothetical protein (RefSeq) compare
Sama_2263 +0.5 1.6 hypothetical protein (RefSeq) compare
Sama_0589 +0.5 3.7 phosphate-selective porin O and P (RefSeq) compare
Sama_1028 +0.5 3.7 LysR family transcriptional regulator (RefSeq) compare
Sama_1560 +0.5 2.2 M24/M37 family peptidase (RefSeq) compare
Sama_1233 +0.5 1.3 peptide ABC transporter, permease protein (RefSeq) compare
Sama_1782 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_1235 +0.5 2.4 peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) compare
Sama_2229 +0.4 3.3 hypothetical protein (RefSeq) compare
Sama_2249 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2230 +0.4 2.7 hypothetical protein (RefSeq) compare
Sama_0386 +0.4 3.4 anti-RNA polymerase sigma 70 factor (RefSeq) compare
Sama_1348 +0.4 0.9 hypothetical protein (RefSeq) compare
Sama_3566 +0.4 1.8 MarR family transcriptional regulator (RefSeq) compare
Sama_2354 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_2841 pntB +0.4 3.5 pyridine nucleotide transhydrogenase (RefSeq) compare
Sama_2357 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_0099 +0.4 3.5 TetR family transcriptional regulator (RefSeq) compare
Sama_2548 +0.4 2.6 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) compare
Sama_0440 hslU +0.4 1.4 ATP-dependent protease ATP-binding subunit HslU (RefSeq) compare
Sama_3508 +0.4 3.8 hypothetical protein (RefSeq) compare
Sama_2935 +0.4 3.5 Na+/H+ antiporter family protein (RefSeq) compare
Sama_1804 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_0166 hslO +0.4 3.1 Hsp33-like chaperonin (RefSeq) compare
Sama_2106 +0.4 2.5 hypothetical protein (RefSeq) compare
Sama_1360 +0.4 2.6 enoyl-CoA hydratase/isomerase (RefSeq) compare
Sama_3507 +0.4 3.5 sulfatase (RefSeq) compare
Sama_R0001 +0.4 1.9 16S ribosomal RNA (RefSeq) compare
Sama_2864 +0.4 1.5 ABC transporter related (RefSeq) compare
Sama_3162 +0.4 2.5 response regulator receiver protein (RefSeq) compare
Sama_2040 +0.4 2.2 TatD family hydrolase (RefSeq) compare
Sama_3352 +0.4 3.6 hypothetical protein (RefSeq) compare
Sama_2371 +0.4 3.1 hypothetical protein (RefSeq) compare
Sama_2348 +0.4 2.1 cytochrome bd-I oxidase subunit II (RefSeq) compare
Sama_0109 +0.4 3.5 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_2349 +0.4 2.5 cytochrome bd-I oxidase subunit I (RefSeq) compare
Sama_0808 +0.4 0.8 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_0252 +0.4 3.3 competence/damage-inducible protein CinA (RefSeq) compare
Sama_1034 mazG +0.4 2.4 nucleoside triphosphate pyrophosphohydrolase (RefSeq) compare
Sama_2738 +0.4 2.0 thiol:disulfide interchange protein DsbC (RefSeq) compare
Sama_1281 +0.4 2.1 putative two-component response-regulatory protein YehT (RefSeq) compare
Sama_1217 +0.4 2.8 hypothetical protein (RefSeq) compare
Sama_3214 +0.4 2.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_3040 +0.4 1.9 bacterioferritin-associated ferredoxin (RefSeq) compare
Sama_2041 +0.4 1.6 type IV pilus biogenesis protein pilZ (RefSeq) compare
Sama_0811 +0.4 2.9 deoxyribodipyrimidine photo-lyase (RefSeq) compare
Sama_2044 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_2266 +0.4 2.5 amino acid/peptide transporter (RefSeq) compare
Sama_1690 +0.4 1.9 hypothetical protein (RefSeq) compare
Sama_1856 thiG +0.4 2.2 thiazole synthase (RefSeq) compare
Sama_2398 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2079 +0.4 2.9 acetyl-CoA synthetase (RefSeq) compare
Sama_2029 +0.4 2.5 membrane-bound lytic transglycolase-related protein (RefSeq) compare
Sama_0899 +0.4 1.7 ribosomal subunit interface protein (RefSeq) compare
Sama_2243 +0.4 2.8 phosphoglucosamine mutase (RefSeq) compare
Sama_1344 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_1758 +0.4 2.8 hypothetical protein (RefSeq) compare
Sama_1668 +0.3 1.7 GGDEF domain-containing protein (RefSeq) compare
Sama_2273 +0.3 2.1 CheW domain-containing protein (RefSeq) compare
Sama_3538 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1523 +0.3 2.9 actP-like component of lactate uptake system (from data) compare
Sama_2848 +0.3 1.8 SpoOM-related protein (RefSeq) compare
Sama_1842 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2246 +0.3 1.0 methionyl-tRNA formyltransferase (RefSeq) compare
Sama_1469 +0.3 2.5 multidrug resistance efflux pump-like protein (RefSeq) compare
Sama_0832 +0.3 2.1 ribosomal RNA large subunit methyltransferase A, putative (RefSeq) compare
Sama_3054 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_0549 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_2233 +0.3 1.4 putative hydrolase (RefSeq) compare
Sama_2083 +0.3 2.3 hypothetical protein (RefSeq) compare
Sama_1873 +0.3 1.8 response regulator receiver protein (RefSeq) compare
Sama_1357 +0.3 1.5 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
Sama_2090 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_3528 +0.3 1.5 molybdenum cofactor biosynthesis protein E (RefSeq) compare
Sama_0818 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_2078 +0.3 2.8 sensor histidine kinase/response regulator (RefSeq) compare
Sama_1286 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_0376 aceF +0.3 1.1 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_0642 +0.3 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq) compare
Sama_2564 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_2081 grxA +0.3 1.4 glutaredoxin 1 (RefSeq) compare
Sama_2203 +0.3 1.8 tyrosine-specific protein phosphatase, putative (RefSeq) compare
Sama_3065 +0.3 2.7 putative salt-induced outer membrane protein (RefSeq) compare
Sama_2161 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1367 +0.3 1.8 short chain dehydrogenase/reductase family oxidoreductase (RefSeq) compare
Sama_1543 +0.3 1.8 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) compare
Sama_3017 +0.3 2.4 ClpXP protease specificity-enhancing factor (RefSeq) compare
Sama_2190 secF +0.3 0.8 preprotein translocase subunit SecF (RefSeq) compare
Sama_2840 pntA +0.3 2.5 NAD(P) transhydrogenase subunit alpha (RefSeq) compare
Sama_2238 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_2270 +0.3 1.6 FlhB domain-containing protein (RefSeq) compare
Sama_0989 +0.3 1.5 warning TorE protein (RefSeq) compare
Sama_1072 rdgC +0.3 1.7 recombination associated protein (RefSeq) compare
Sama_2651 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_0973 +0.3 1.3 deoxyribose-phosphate aldolase (RefSeq) compare
Sama_1263 +0.3 1.6 acetyltransferase (RefSeq) compare
Sama_3121 +0.3 1.5 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Tween 20 in Shewanella amazonensis SB2B

For carbon source Tween 20 across organisms