Experiment set2H42 for Shewanella oneidensis MR-1

LB with Fusidic acid sodium salt 0.125 mg/ml

Group: stress
Media: LB + Fusidic acid sodium salt (0.125 mg/ml)
Culturing: MR1_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 8/18/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 649 E7,E8

Specific Phenotypes

For 11 genes in this experiment

For stress Fusidic acid sodium salt in Shewanella oneidensis MR-1

For stress Fusidic acid sodium salt across organisms

SEED Subsystems

Subsystem	#Specific
Cobalt-zinc-cadmium resistance	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Proteasome bacterial	1
Proteolysis in bacteria, ATP-dependent	1
Thioredoxin-disulfide reductase	1
Translation initiation factors eukaryotic and archaeal	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Tryptophan metabolism
• Glutathione metabolism
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
superoxide radicals degradation	2	2	1
methanol oxidation to formaldehyde IV	2	1	1
ethanol degradation IV	3	3	1
reactive oxygen species degradation	4	4	1