Experiment set2H40 for Shewanella amazonensis SB2B

Compare to:

Minimal media with D-Mannose as carbon source

200 most detrimental genes:

  gene name fitness t score description  
Sama_0367 +1.7 6.2 prepilin peptidase (RefSeq) compare
Sama_0173 +1.4 5.0 general secretion pathway protein H (RefSeq) compare
Sama_2312 flgH +1.4 9.2 flagellar basal body L-ring protein (RefSeq) compare
Sama_2313 flgG +1.3 8.4 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2318 flgB +1.2 5.8 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_0176 +1.1 2.9 general secretion pathway protein K (RefSeq) compare
Sama_2621 +1.1 4.4 malate dehydrogenase (RefSeq) compare
Sama_2294 fliI +1.1 8.5 flagellum-specific ATP synthase (RefSeq) compare
Sama_2321 flgA +1.1 8.8 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_2286 +1.1 5.3 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_1909 +1.1 3.5 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_0170 +1.1 4.3 general secretion pathway protein E (RefSeq) compare
Sama_2293 +1.0 5.6 flagellar protein FliJ (RefSeq) compare
Sama_2044 +1.0 3.7 hypothetical protein (RefSeq) compare
Sama_2317 flgC +1.0 3.7 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_2285 fliR +1.0 6.7 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_3129 +1.0 2.9 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_2280 fliA +1.0 6.0 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_1868 +1.0 3.4 hypothetical protein (RefSeq) compare
Sama_2284 flhB +1.0 6.2 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_2297 fliF +0.9 6.4 flagellar MS-ring protein (RefSeq) compare
Sama_2335 +0.9 7.4 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_2311 flgI +0.9 6.8 flagellar basal body P-ring protein (RefSeq) compare
Sama_2287 fliP +0.9 6.3 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_0169 +0.9 4.3 type II and III secretion system protein (RefSeq) compare
Sama_2283 flhA +0.9 7.3 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_2316 flgD +0.9 5.3 flagellar basal body rod modification protein (RefSeq) compare
Sama_2092 +0.9 6.6 OmpA/MotB (RefSeq) compare
Sama_2306 +0.8 5.0 flagellin-like protein (RefSeq) compare
Sama_2314 flgF +0.8 4.7 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_0565 +0.8 7.0 LacI family transcription regulator (RefSeq) compare
Sama_2301 +0.8 5.3 response regulator receiver protein (RefSeq) compare
Sama_2315 flgE +0.8 6.5 flagellar hook protein FlgE (RefSeq) compare
Sama_2295 fliH +0.8 4.1 flagellar assembly protein H (RefSeq) compare
Sama_2221 phhB +0.8 2.9 pterin-4-alpha-carbinolamine dehydratase (RefSeq) compare
Sama_2329 +0.8 5.6 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_2288 +0.7 4.3 flagellar protein FliO (RefSeq) compare
Sama_2328 +0.7 5.7 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_3068 +0.7 5.8 sodium-type flagellar protein MotX (RefSeq) compare
Sama_1974 +0.7 3.1 Cytidine deaminase (EC 3.5.4.5) (from data) compare
Sama_1346 +0.7 2.5 hypothetical protein (RefSeq) compare
Sama_0642 +0.7 3.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq) compare
Sama_2266 +0.7 5.1 amino acid/peptide transporter (RefSeq) compare
Sama_2292 +0.7 4.9 flagellar hook-length control protein FliK (RefSeq) compare
Sama_2282 flhF +0.7 4.1 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_0833 +0.7 1.8 major outer membrane lipoprotein, putative (RefSeq) compare
Sama_0179 +0.7 4.4 general secretion pathway protein N (RefSeq) compare
Sama_0294 +0.7 5.1 LacI family transcription regulator (RefSeq) compare
Sama_0465 +0.7 2.0 MSHA biogenesis protein MshP (RefSeq) compare
Sama_0292 +0.6 4.2 glucose/galactose transporter (RefSeq) compare
Sama_1651 +0.6 2.2 phosphocarrier protein HPr (RefSeq) compare
Sama_2164 +0.6 5.1 sensory box protein (RefSeq) compare
Sama_1358 +0.6 3.1 pyruvate carboxyltransferase (RefSeq) compare
Sama_1348 +0.6 2.0 hypothetical protein (RefSeq) compare
Sama_0379 +0.6 5.8 hypothetical protein (RefSeq) compare
Sama_3066 +0.6 3.1 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_2298 +0.6 2.4 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_3104 +0.6 2.3 hypothetical protein (RefSeq) compare
Sama_2253 +0.6 1.7 hypothetical protein (RefSeq) compare
Sama_2476 +0.6 4.5 twitching motility protein (RefSeq) compare
Sama_2302 fliS +0.6 2.9 flagellar protein FliS (RefSeq) compare
Sama_0184 +0.6 5.1 cysQ protein (RefSeq) compare
Sama_0320 +0.6 2.9 tRNA nucleotidyltransferase (RefSeq) compare
Sama_2272 +0.6 2.3 purine-binding chemotaxis protein CheW (RefSeq) compare
Sama_1539 +0.6 3.2 putative metal dependent phosphohydrolase (RefSeq) compare
Sama_2432 motB +0.6 3.9 flagellar motor protein MotB (RefSeq) compare
Sama_1756 +0.6 1.5 MarR family transcriptional regulator (RefSeq) compare
Sama_1720 +0.6 1.3 hypothetical protein (RefSeq) compare
Sama_3622 +0.5 4.2 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Sama_0195 +0.5 4.6 RNA-binding protein (RefSeq) compare
Sama_2326 +0.5 3.9 hypothetical protein (RefSeq) compare
Sama_1777 +0.5 1.3 hypothetical protein (RefSeq) compare
Sama_1323 +0.5 3.1 hypothetical protein (RefSeq) compare
Sama_1826 +0.5 1.5 ExsB protein (RefSeq) compare
Sama_0884 acpS +0.5 3.0 4'-phosphopantetheinyl transferase (RefSeq) compare
Sama_3094 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_1858 +0.5 2.5 thiF protein, putative (RefSeq) compare
Sama_0264 +0.5 3.4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Sama_2291 fliL +0.5 2.6 flagellar basal body-associated protein FliL (RefSeq) compare
Sama_2034 +0.5 1.3 methyltransferase (RefSeq) compare
Sama_1879 +0.5 3.3 hypothetical protein (RefSeq) compare
Sama_2626 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_3510 ompR +0.5 3.5 osmolarity response regulator (RefSeq) compare
Sama_2263 +0.5 1.6 hypothetical protein (RefSeq) compare
Sama_1013 +0.5 3.0 putative ABC transporter ATP-binding protein (RefSeq) compare
Sama_2336 +0.5 3.6 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_1085 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_2296 fliG +0.5 1.8 flagellar motor switch protein G (RefSeq) compare
Sama_2738 +0.5 2.5 thiol:disulfide interchange protein DsbC (RefSeq) compare
Sama_1413 +0.5 1.8 hypothetical protein (RefSeq) compare
Sama_1681 +0.5 1.6 putative lipoprotein (RefSeq) compare
Sama_2632 +0.5 2.3 hypothetical protein (RefSeq) compare
Sama_2333 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_0588 +0.5 2.3 FMN-binding (RefSeq) compare
Sama_2081 grxA +0.5 2.5 glutaredoxin 1 (RefSeq) compare
Sama_3193 +0.5 2.3 peptidyl-tRNA hydrolase domain protein (RefSeq) compare
Sama_2072 +0.5 2.8 phosphoenolpyruvate synthase (RefSeq) compare
Sama_2235 +0.5 3.0 NAD dependent epimerase/dehydratase family protein (RefSeq) compare
Sama_1283 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_0808 +0.5 0.9 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_2331 +0.4 3.0 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_1837 +0.4 1.7 lactoylglutathione lyase (RefSeq) compare
Sama_0589 +0.4 3.3 phosphate-selective porin O and P (RefSeq) compare
Sama_2244 +0.4 3.5 polysaccharide biosynthesis protein (RefSeq) compare
Sama_2348 +0.4 2.4 cytochrome bd-I oxidase subunit II (RefSeq) compare
Sama_3263 +0.4 3.1 hypothetical protein (RefSeq) compare
Sama_1680 +0.4 2.1 thioredoxin family protein (RefSeq) compare
Sama_2651 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_2521 +0.4 2.7 agmatine deiminase (RefSeq) compare
Sama_2472 +0.4 1.4 putative transcriptional regulator (RefSeq) compare
Sama_0396 zntR +0.4 1.5 zinc-responsive transcriptional regulator (RefSeq) compare
Sama_2040 +0.4 2.2 TatD family hydrolase (RefSeq) compare
Sama_1010 +0.4 1.9 hypothetical protein (RefSeq) compare
Sama_1804 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_3338 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_1247 +0.4 2.0 primosomal replication protein N'', putative (RefSeq) compare
Sama_2620 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_2784 +0.4 2.4 hypothetical protein (RefSeq) compare
Sama_1349 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_0841 +0.4 3.2 chloride channel (RefSeq) compare
Sama_2199 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_2033 +0.4 1.7 lipoprotein Blc (RefSeq) compare
Sama_1874 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_0171 +0.4 1.0 general secretion pathway protein F (RefSeq) compare
Sama_R0027 +0.4 0.9 5S ribosomal RNA (RefSeq) compare
Sama_2090 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_2300 +0.4 2.8 flagellar regulatory protein B (RefSeq) compare
Sama_2310 flgJ +0.4 2.1 flagellar rod assembly protein/muramidase FlgJ (RefSeq) compare
Sama_2279 +0.4 1.7 response regulator receiver protein (RefSeq) compare
Sama_2337 +0.4 3.1 hypothetical protein (RefSeq) compare
Sama_1725 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_2926 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_3100 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_1990 +0.4 2.0 sulphate transporter (RefSeq) compare
Sama_1357 +0.4 2.0 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
Sama_3133 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_0973 +0.4 1.7 deoxyribose-phosphate aldolase (RefSeq) compare
Sama_0370 +0.4 3.0 prepilin-type cleavage/methylation (RefSeq) compare
Sama_0930 +0.4 1.9 type IV pilus assembly protein PilX (RefSeq) compare
Sama_1248 +0.3 2.1 hypothetical protein (RefSeq) compare
Sama_1354 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2433 +0.3 2.2 flagellar motor protein PomA (RefSeq) compare
Sama_2109 +0.3 1.8 putative lipoprotein (RefSeq) compare
Sama_2791 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_1938 +0.3 0.7 hypothetical protein (RefSeq) compare
Sama_3511 envZ +0.3 2.9 osmolarity sensor protein (RefSeq) compare
Sama_1306 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_0587 +0.3 1.9 PepSY-associated TM helix (RefSeq) compare
Sama_1906 +0.3 2.7 HlyD family-like protein (RefSeq) compare
Sama_3259 +0.3 3.2 toxin secretion ATP-binding protein (RefSeq) compare
Sama_3319 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2166 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_1117 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_2383 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_1367 +0.3 1.8 short chain dehydrogenase/reductase family oxidoreductase (RefSeq) compare
Sama_1817 +0.3 2.3 peptidyl-dipeptidase A (RefSeq) compare
Sama_2290 fliM +0.3 1.9 flagellar motor switch protein FliM (RefSeq) compare
Sama_2399 +0.3 1.5 response regulator receiver protein (RefSeq) compare
Sama_2305 +0.3 2.0 uncharacterized flagellar protein FlaG (RefSeq) compare
Sama_1788 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_0454 +0.3 2.9 MSHA biogenesis protein MshL (RefSeq) compare
Sama_2260 +0.3 1.8 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) compare
Sama_2307 +0.3 2.3 flagellin-like protein (RefSeq) compare
Sama_2349 +0.3 2.3 cytochrome bd-I oxidase subunit I (RefSeq) compare
Sama_1471 +0.3 1.8 membrane-fusion protein (RefSeq) compare
Sama_1543 +0.3 1.9 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) compare
Sama_3127 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2461 +0.3 0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_1135 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1191 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_2094 +0.3 1.5 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq) compare
Sama_1467 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_1820 +0.3 1.6 metal-binding protein (RefSeq) compare
Sama_1671 +0.3 1.5 hydrogenase expression/formation protein HypD (RefSeq) compare
Sama_1842 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1286 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_0801 +0.3 1.7 acetyltransferase (RefSeq) compare
Sama_1991 +0.3 1.9 bifunctional methionine sulfoxide reductase B/A protein (RefSeq) compare
Sama_1646 +0.3 1.5 D-alanyl-D-alanine carboxypeptidase-related protein (RefSeq) compare
Sama_2106 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_3231 +0.3 2.0 hypothetical protein (RefSeq) compare
Sama_0944 +0.3 2.1 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
Sama_0109 +0.3 2.7 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_0112 +0.3 2.3 glycosyl transferase, group 2 family protein (RefSeq) compare
Sama_1770 +0.3 1.9 alanine dehydrogenase (RefSeq) compare
Sama_0767 +0.3 2.1 putative methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Sama_3305 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_0114 +0.3 2.7 hypothetical protein (RefSeq) compare
Sama_3260 +0.3 2.6 HlyD family secretion protein (RefSeq) compare
Sama_2885 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1444 +0.3 0.5 cytochrome c3 (RefSeq) compare
Sama_0971 +0.3 2.2 nucleoside transporter (RefSeq) compare
Sama_1325 +0.3 2.0 L-serine ammonia-lyase (RefSeq) compare
Sama_0989 +0.3 1.2 warning TorE protein (RefSeq) compare
Sama_1099 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_2854 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1056 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_3261 +0.3 2.5 type I secretion outer membrane protein, TolC (RefSeq) compare
Sama_1342 +0.3 1.3 phosphinothricin N-acetyltransferase, putative (RefSeq) compare
Sama_1486 +0.3 1.2 ABC transporter, ATP-binding protein (RefSeq) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Mannose in Shewanella amazonensis SB2B

For carbon source D-Mannose across organisms