Experiment set2H40 for Dechlorosoma suillum PS

Compare to:

R2A with sodium pyruvate

200 most important genes:

  gene name fitness t score description  
Dsui_0174 -4.1 -2.8 hypothetical protein compare
Dsui_1576 -4.0 -2.7 dihydrolipoamide dehydrogenase compare
Dsui_1446 -3.9 -3.7 succinyl-CoA synthetase, alpha subunit compare
Dsui_1445 -2.7 -3.6 succinyl-CoA synthetase, beta subunit compare
Dsui_2902 -2.4 -1.7 hypothetical protein compare
Dsui_2752 -2.4 -1.6 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_3081 -2.2 -1.7 chaperone protein DnaK compare
Dsui_0255 -2.1 -1.4 hypothetical protein compare
Dsui_3054 -2.0 -2.0 phosphate ABC transporter, permease protein PstA compare
Dsui_0007 -2.0 -1.6 cold shock protein compare
Dsui_0567 -1.9 -2.0 molybdenum-pterin binding domain protein compare
Dsui_2560 -1.8 -2.7 zonula occludens toxin compare
Dsui_2277 -1.7 -2.4 Rhs element Vgr protein compare
Dsui_2981 -1.7 -1.1 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_1891 -1.6 -2.6 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase compare
Dsui_2024 -1.6 -3.0 esterase/lipase compare
Dsui_2563 -1.6 -3.1 hypothetical protein compare
Dsui_1171 -1.6 -2.7 cytochrome c-type biogenesis protein CcmE compare
Dsui_1652 -1.5 -1.5 FeoA-like protein compare
Dsui_1577 -1.5 -1.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_0032 -1.5 -1.8 NAD-dependent protein deacetylase, SIR2 family compare
Dsui_0477 -1.5 -2.5 tol-pal system protein YbgF compare
Dsui_1248 -1.5 -1.3 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase compare
Dsui_1179 -1.5 -1.8 ribosome-associated heat shock protein implicated in recycling of 50S subunit compare
Dsui_1381 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_0552 -1.5 -2.2 nitrogen fixation protein NifX compare
Dsui_0880 -1.5 -3.0 Bacterial regulatory protein, Fis family compare
Dsui_2295 -1.4 -1.7 transcriptional regulator compare
Dsui_3343 -1.4 -2.0 putative hydrolase of the alpha/beta-hydrolase fold protein compare
Dsui_2604 -1.3 -3.5 hypothetical protein compare
Dsui_0685 -1.3 -2.0 glutathione S-transferase compare
Dsui_0401 -1.3 -1.5 nucleoside-diphosphate-sugar epimerase compare
Dsui_1325 -1.3 -2.9 ADP-ribose pyrophosphatase compare
Dsui_2275 -1.3 -2.0 putative transcriptional regulator compare
Dsui_1356 -1.2 -1.5 hypothetical protein compare
Dsui_1578 -1.2 -3.0 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_3097 -1.2 -1.5 O-6-methylguanine DNA methyltransferase compare
Dsui_0465 -1.2 -1.5 ADP-heptose:LPS heptosyltransferase compare
Dsui_3352 -1.1 -1.7 cAMP-binding protein compare
Dsui_0569 -1.1 -2.1 hypothetical protein compare
Dsui_2614 -1.1 -2.4 hypothetical protein compare
Dsui_1004 -1.1 -0.7 conserved protein of DIM6/NTAB family compare
Dsui_2386 -1.1 -1.5 pyruvate-formate lyase-activating enzyme compare
Dsui_0499 -1.1 -1.5 DNA-directed RNA polymerase, omega subunit compare
Dsui_2868 -1.1 -2.0 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein compare
Dsui_0434 -1.1 -2.2 ribonuclease, Rne/Rng family compare
Dsui_2430 -1.1 -2.1 tRNA-Asn compare
Dsui_1392 -1.1 -2.2 type II secretory pathway, component PulF compare
Dsui_0500 -1.0 -1.7 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2041 -1.0 -2.1 enoyl-CoA hydratase/carnithine racemase compare
Dsui_3440 -1.0 -1.5 Protein of unknown function (DUF2892) compare
Dsui_2553 -1.0 -2.5 Phage X family/Phage replication protein CRI compare
Dsui_2086 -1.0 -1.7 cytochrome c compare
Dsui_0099 -1.0 -2.3 putative periplasmic or secreted lipoprotein compare
Dsui_3351 -1.0 -1.4 cytochrome c peroxidase compare
Dsui_2908 -1.0 -2.3 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_2152 -1.0 -2.5 molybdenum cofactor synthesis domain protein compare
Dsui_2945 -1.0 -2.0 hypothetical protein compare
Dsui_1682 -1.0 -1.6 biopolymer transport protein compare
Dsui_0489 -1.0 -2.2 DNA-binding regulatory protein, YebC/PmpR family compare
Dsui_0745 -0.9 -1.2 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_0725 -0.9 -1.7 putative hydrolase of the alpha/beta superfamily compare
Dsui_1037 -0.9 -0.9 ribosomal protein L25, Ctc-form compare
Dsui_2956 -0.9 -1.3 ABC-type cobalt transport system, periplasmic component compare
Dsui_2443 -0.9 -1.2 putative metal-binding protein, possibly nucleic-acid binding protein compare
Dsui_3396 -0.9 -2.1 transcriptional regulator compare
Dsui_3523 -0.9 -2.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2531 -0.9 -1.1 uncharacterized protein, YfiH family compare
Dsui_2457 -0.9 -3.8 GTP-binding protein LepA compare
Dsui_2151 -0.9 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
Dsui_1605 -0.9 -2.1 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_0192 -0.9 -1.9 hypothetical protein compare
Dsui_0837 -0.9 -1.9 tRNA modification GTPase TrmE compare
Dsui_3118 -0.9 -1.7 polyferredoxin compare
Dsui_3457 -0.8 -0.7 K+ transporter compare
Dsui_3484 -0.8 -0.9 putative permease compare
Dsui_1393 -0.8 -1.5 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_2398 -0.8 -1.6 hypothetical protein compare
Dsui_2368 -0.8 -1.1 serine O-acetyltransferase compare
Dsui_0024 -0.8 -1.6 cytochrome c556 compare
Dsui_0549 -0.8 -2.1 queuosine biosynthesis protein QueC compare
Dsui_0527 -0.8 -2.8 hypothetical protein compare
Dsui_3240 -0.8 -2.9 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_2042 -0.8 -1.6 cystathionine beta-lyase/cystathionine gamma-synthase compare
Dsui_1459 -0.8 -1.6 hypothetical protein compare
Dsui_2080 -0.8 -1.3 response regulator compare
Dsui_2180 -0.8 -1.0 hypothetical protein compare
Dsui_2828 -0.8 -2.3 hypothetical protein compare
Dsui_3080 -0.8 -0.8 molecular chaperone GrpE (heat shock protein) compare
Dsui_2610 -0.8 -1.6 single-stranded DNA-binding protein compare
Dsui_2221 -0.7 -1.5 putative ATPase compare
Dsui_0710 -0.7 -2.1 competence/damage-inducible protein CinA-like protein compare
Dsui_0950 -0.7 -1.9 acyl dehydratase compare
Dsui_3524 -0.7 -2.0 signal transduction histidine kinase compare
Dsui_2305 -0.7 -3.3 electron transfer flavoprotein, beta subunit compare
Dsui_2115 -0.7 -1.9 transcriptional regulator compare
Dsui_0939 -0.7 -2.6 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0669 -0.7 -1.4 hypothetical protein compare
Dsui_1840 -0.7 -1.8 hypothetical protein compare
Dsui_2781 -0.7 -1.3 PAS domain S-box compare
Dsui_3179 -0.7 -1.2 signal transduction histidine kinase compare
Dsui_1198 -0.7 -2.7 apolipoprotein N-acyltransferase compare
Dsui_2707 -0.7 -1.6 putative permease compare
Dsui_0188 -0.7 -1.5 hypothetical protein compare
Dsui_2501 -0.7 -1.3 TniQ protein compare
Dsui_1730 -0.7 -1.0 flagellar biosynthesis anti-sigma factor FlgM compare
Dsui_0657 -0.7 -3.3 methyl-accepting chemotaxis protein compare
Dsui_3536 -0.7 -1.8 leucyl aminopeptidase compare
Dsui_2189 -0.7 -1.6 acyl-CoA synthetase (NDP forming) compare
Dsui_2964 -0.7 -1.8 precorrin-2 C20-methyltransferase compare
Dsui_3279 -0.7 -2.0 formate dehydrogenase family accessory protein FdhD compare
Dsui_1994 -0.7 -1.0 NADPH-dependent FMN reductase compare
Dsui_1060 -0.7 -1.8 putative ATPase (AAA+ superfamily) compare
Dsui_3114 -0.7 -1.0 heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Dsui_3194 -0.7 -2.0 pseudouridylate synthase I compare
Dsui_3436 -0.7 -1.0 beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase compare
Dsui_1955 -0.7 -1.7 3'-5' exonuclease compare
Dsui_0974 -0.7 -1.5 hypothetical protein compare
Dsui_3014 -0.7 -0.8 outer membrane protein/peptidoglycan-associated (lipo)protein compare
Dsui_1402 -0.7 -1.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Dsui_1860 -0.7 -1.1 methyl-accepting chemotaxis protein compare
Dsui_0214 -0.6 -1.6 TIGR02594 family protein compare
Dsui_2673 -0.6 -1.4 hypothetical protein compare
Dsui_3327 -0.6 -1.0 cytochrome b compare
Dsui_1316 -0.6 -2.0 hypothetical protein compare
Dsui_2422 -0.6 -1.8 truncated hemoglobin compare
Dsui_2326 -0.6 -0.7 hypothetical protein compare
Dsui_0193 -0.6 -2.9 putative phage protein, putative large terminase compare
Dsui_2694 -0.6 -1.1 ribosomal protein S2 compare
Dsui_1893 -0.6 -1.3 putative membrane protein compare
Dsui_0260 -0.6 -2.3 sulfate ABC transporter, permease protein CysT compare
Dsui_1059 -0.6 -0.8 thiamine monophosphate synthase compare
Dsui_1817 -0.6 -1.7 anaerobic dehydrogenase, typically selenocysteine-containing compare
Dsui_3115 -0.6 -1.8 hypothetical protein compare
Dsui_1197 -0.6 -2.4 putative Mg2+ and Co2+ transporter CorC compare
Dsui_0992 -0.6 -0.9 putative membrane protein compare
Dsui_2642 -0.6 -1.7 outer membrane protein compare
Dsui_2005 -0.6 -1.0 DNA polymerase III epsilon subunit-like 3'-5' exonuclease compare
Dsui_1600 -0.6 -3.0 putative enzyme of heme biosynthesis compare
Dsui_2540 -0.6 -0.9 ribosomal protein S12 methylthiotransferase RimO compare
Dsui_1980 -0.6 -1.9 hypothetical protein compare
Dsui_2306 -0.6 -1.4 transcriptional regulator compare
Dsui_2116 -0.6 -1.5 Fe-dependent oxidoreductase, alcohol dehydrogenase compare
Dsui_2355 -0.6 -0.9 cytochrome B561 compare
Dsui_3295 -0.6 -1.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_0176 -0.6 -1.8 ribosome modulation factor compare
Dsui_0476 -0.6 -1.3 organic radical activating enzyme compare
Dsui_1251 -0.6 -0.9 acylphosphatase compare
Dsui_1810 -0.6 -2.8 DNA-binding protein, YbaB/EbfC family compare
Dsui_2948 -0.6 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Dsui_0398 -0.6 -2.3 UDP-glucose-4-epimerase compare
Dsui_1275 -0.6 -1.4 protein-export chaperone SecB compare
Dsui_3441 -0.6 -2.7 cation/multidrug efflux pump compare
Dsui_1669 -0.6 -1.1 trypsin-like serine protease with C-terminal PDZ domain compare
Dsui_1370 -0.6 -1.6 putative permease, DMT superfamily compare
Dsui_3502 -0.6 -1.6 iron-sulfur cluster binding protein, putative compare
Dsui_2698 -0.6 -1.5 purine nucleoside phosphorylase compare
Dsui_0846 -0.6 -1.9 glucose-inhibited division protein A compare
Dsui_2888 -0.6 -1.9 stress-induced morphogen compare
Dsui_2920 -0.6 -1.0 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_2767 -0.6 -1.0 glutaredoxin-like protein compare
Dsui_0627 -0.6 -1.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Dsui_2179 -0.6 -0.9 conserved protein of DIM6/NTAB family compare
Dsui_0297 -0.6 -1.5 sugar fermentation stimulation protein compare
Dsui_2605 -0.6 -3.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0202 -0.6 -1.0 hypothetical protein compare
Dsui_0738 -0.6 -1.2 secondary thiamine-phosphate synthase enzyme compare
Dsui_1016 -0.6 -1.4 tRNA (guanine-N(7)-)-methyltransferase compare
Dsui_2252 -0.6 -1.5 transcriptional regulator with HTH domain and aminotransferase domain compare
Dsui_0492 -0.5 -1.5 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Dsui_0737 -0.5 -1.7 hypothetical protein compare
Dsui_0438 -0.5 -1.6 cell wall-associated hydrolase, invasion-associated protein compare
Dsui_3293 -0.5 -1.8 pseudouridine synthase family protein compare
Dsui_2592 -0.5 -2.2 type II secretory pathway, component PulF compare
Dsui_1562 -0.5 -1.5 phosphoribulokinase compare
Dsui_2846 -0.5 -3.2 ATPase compare
Dsui_1467 -0.5 -2.3 ABC-type transport system, involved in lipoprotein release, permease component compare
Dsui_2489 -0.5 -1.6 polyhydroxyalkanoate depolymerase, intracellular compare
Dsui_2895 -0.5 -1.6 ABC-type uncharacterized transport system, periplasmic component compare
Dsui_0203 -0.5 -1.5 hypothetical protein compare
Dsui_1273 -0.5 -1.7 Rhodanese-related sulfurtransferase compare
Dsui_2476 -0.5 -0.7 hypothetical protein compare
Dsui_2960 -0.5 -1.2 hypothetical protein compare
Dsui_2271 -0.5 -1.5 hypothetical protein compare
Dsui_0675 -0.5 -0.8 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_1084 -0.5 -3.4 bacteriophage protein gp37 compare
Dsui_1094 -0.5 -0.9 shikimate kinase compare
Dsui_0949 -0.5 -0.7 hypothetical protein compare
Dsui_0197 -0.5 -1.2 hypothetical protein compare
Dsui_2508 -0.5 -2.9 Fe-S-cluster-containing hydrogenase subunit compare
Dsui_2766 -0.5 -1.4 putative homoserine kinase type II (protein kinase fold) compare
Dsui_0684 -0.5 -2.5 putative nucleoside-diphosphate sugar epimerase compare
Dsui_3257 -0.5 -2.7 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities compare
Dsui_2312 -0.5 -1.2 3-hydroxybutyrate dehydrogenase compare
Dsui_2369 -0.5 -1.5 iron-sulfur cluster assembly transcription factor IscR compare
Dsui_3150 -0.5 -1.0 electron transfer flavoprotein, beta subunit compare
Dsui_2567 -0.5 -4.3 hypothetical protein compare
Dsui_1097 -0.5 -1.2 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_2798 -0.5 -1.4 arabinose efflux permease family protein compare
Dsui_2303 -0.5 -0.9 putative membrane protein compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium pyruvate across organisms