Experiment set2H4 for Shewanella amazonensis SB2B

Compare to:

LB flask, timecourse 2, timepoint 1

200 most detrimental genes:

  gene name fitness t score description  
Sama_1889 +1.0 1.7 hypothetical protein (RefSeq) compare
Sama_2587 +0.8 1.6 rRNA large subunit methyltransferase (RefSeq) compare
Sama_2125 +0.8 1.8 putative transcriptional regulator (RefSeq) compare
Sama_1654 +0.7 2.2 hypothetical protein (RefSeq) compare
Sama_0833 +0.7 1.3 major outer membrane lipoprotein, putative (RefSeq) compare
Sama_1343 +0.7 1.4 hypothetical protein (RefSeq) compare
Sama_2246 +0.6 1.6 methionyl-tRNA formyltransferase (RefSeq) compare
Sama_1802 +0.6 2.0 hypothetical protein (RefSeq) compare
Sama_1990 +0.6 3.0 sulphate transporter (RefSeq) compare
Sama_1480 +0.6 1.3 hypothetical protein (RefSeq) compare
Sama_1611 +0.6 0.6 HU family DNA-binding protein (RefSeq) compare
Sama_0678 +0.5 2.2 hypothetical protein (RefSeq) compare
Sama_1457 +0.5 1.7 nitroreductase family protein (RefSeq) compare
Sama_2068 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_2553 +0.5 2.5 putative lipoprotein (RefSeq) compare
Sama_1746 +0.5 0.9 hypothetical protein (RefSeq) compare
Sama_2322 +0.5 1.4 putative anti-sigma-28 factor, FlgM (RefSeq) compare
Sama_1635 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_1350 +0.5 1.3 hypothetical protein (RefSeq) compare
Sama_2276 +0.5 1.0 chemotaxis-specific methylesterase (RefSeq) compare
Sama_0716 +0.5 2.2 hypothetical protein (RefSeq) compare
Sama_0807 +0.5 3.0 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq) compare
Sama_2399 +0.5 1.8 response regulator receiver protein (RefSeq) compare
Sama_1958 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_0925 lspA +0.4 1.2 lipoprotein signal peptidase (RefSeq) compare
Sama_1308 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_2259 +0.4 2.0 MviM protein (RefSeq) compare
Sama_1624 +0.4 1.7 periplasmic nitrate reductase C-type cytochrome, NapC/NirT (RefSeq) compare
Sama_0134 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_1347 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_3333 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_1823 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1005 +0.4 2.7 putative signal transduction protein (RefSeq) compare
Sama_2051 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_2058 +0.4 0.7 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_1041 surE +0.4 2.0 stationary phase survival protein SurE (RefSeq) compare
Sama_1407 +0.4 1.3 ACT domain-containing protein (RefSeq) compare
Sama_2081 grxA +0.4 1.7 glutaredoxin 1 (RefSeq) compare
Sama_0999 +0.4 2.3 hypothetical protein (RefSeq) compare
Sama_1128 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_1618 +0.4 1.8 CBS domain-containing protein (RefSeq) compare
Sama_1382 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_2303 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_2165 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1874 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_1630 +0.4 1.9 LysR family transcriptional regulator (RefSeq) compare
Sama_2317 flgC +0.4 1.2 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_2461 +0.4 0.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_2195 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2076 +0.3 1.7 response regulator receiver protein (RefSeq) compare
Sama_3267 +0.3 1.7 TetR family transcriptional regulator (RefSeq) compare
Sama_2791 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_3578 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_1837 +0.3 1.4 lactoylglutathione lyase (RefSeq) compare
Sama_1910 bcp +0.3 1.3 thioredoxin-dependent thiol peroxidase (RefSeq) compare
Sama_3273 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_0164 +0.3 2.0 no description compare
Sama_1344 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_0390 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_2250 +0.3 1.0 acetoacetyl-CoA reductase (RefSeq) compare
Sama_1672 +0.3 0.9 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_2044 +0.3 0.7 hypothetical protein (RefSeq) compare
Sama_2060 +0.3 1.8 pseudouridylate synthase (RefSeq) compare
Sama_2296 fliG +0.3 1.1 flagellar motor switch protein G (RefSeq) compare
Sama_1960 +0.3 1.2 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_2799 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_0561 +0.3 2.2 Fructokinase (EC 2.7.1.4) (from data) compare
Sama_1783 +0.3 1.2 putative DNA-binding transcriptional regulator (RefSeq) compare
Sama_3640 +0.3 2.0 DeoR family transcriptional regulator (RefSeq) compare
Sama_2792 +0.3 1.9 acetyltransferase (RefSeq) compare
Sama_1595 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_2356 +0.3 1.8 no description compare
Sama_2475 +0.3 1.9 twitching motility protein PilU (RefSeq) compare
Sama_1126 +0.3 1.5 acetyltransferase (RefSeq) compare
Sama_2069 +0.3 0.8 MarR family transcriptional regulator (RefSeq) compare
Sama_0053 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_1527 +0.3 1.0 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Sama_2084 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2581 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_2626 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_1007 +0.3 1.2 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Sama_1816 +0.3 1.5 TetR family transcriptional regulator (RefSeq) compare
Sama_0253 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_1623 +0.3 1.4 nitrate reductase cytochrome c-type subunit (NapB) (RefSeq) compare
Sama_3447 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_1583 +0.3 1.2 GAF domain-containing protein (RefSeq) compare
Sama_2986 +0.3 1.8 cytochrome c-type protein NapB (RefSeq) compare
Sama_1937 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2443 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_2948 +0.3 1.6 response regulator receiver protein (RefSeq) compare
Sama_1472 +0.3 1.7 ABC transporter permease protein (RefSeq) compare
Sama_1870 fadE +0.3 1.8 acyl-CoA dehydrogenase (RefSeq) compare
Sama_1617 +0.3 1.3 asparaginase family protein (RefSeq) compare
Sama_1468 +0.3 1.2 putative macrolide efflux ABC transporter, ATP-binding protein (RefSeq) compare
Sama_2987 +0.3 1.6 chromosome replication initiation inhibitor protein (RefSeq) compare
Sama_1971 rrmA +0.3 1.4 23S rRNA methyltransferase A (RefSeq) compare
Sama_2506 +0.3 1.1 peptidyl-prolyl cis-trans isomerase FklB (RefSeq) compare
Sama_1370 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_0911 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_2224 +0.3 0.7 UDP-glucose 4-epimerase (RefSeq) compare
Sama_2494 +0.3 1.4 cytochrome b561 (RefSeq) compare
Sama_1867 +0.3 0.7 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Sama_0633 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_1992 +0.3 1.6 isopenicillin-N synthase (RefSeq) compare
Sama_1590 +0.3 1.7 adhesin-associated BNR repeat protein (from data) compare
Sama_1461 +0.3 1.3 SM-20 domain-containing protein (RefSeq) compare
Sama_0570 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_3038 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1314 +0.3 1.2 putative thioredoxin-like protein (RefSeq) compare
Sama_1400 +0.3 2.0 periplasmic binding protein/LacI transcriptional regulator (RefSeq) compare
Sama_2389 +0.3 1.6 LysR family transcriptional regulator (RefSeq) compare
Sama_1288 +0.3 1.8 putative uncharacterized protein involved in response to NO (RefSeq) compare
Sama_0874 +0.3 0.8 RNA polymerase sigma factor RpoE (RefSeq) compare
Sama_2172 +0.3 1.1 von Willebrand factor type A domain-containing protein (RefSeq) compare
Sama_1668 +0.3 1.1 GGDEF domain-containing protein (RefSeq) compare
Sama_0412 +0.3 1.9 Uridine phosphorylase (EC 2.4.2.3) (from data) compare
Sama_1873 +0.3 1.4 response regulator receiver protein (RefSeq) compare
Sama_1513 +0.3 1.3 putative sulfate transport protein CysZ (RefSeq) compare
Sama_0842 +0.2 1.5 hypothetical protein (RefSeq) compare
Sama_1106 +0.2 1.4 histone acetyltransferase HPA2 (RefSeq) compare
Sama_2052 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_1413 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1896 +0.2 1.2 putative diguanylate phosphodiesterase (RefSeq) compare
Sama_1996 +0.2 0.9 diacylglycerol kinase (RefSeq) compare
Sama_0772 +0.2 1.4 ABC transporter, ATP-binding protein (RefSeq) compare
Sama_3472 +0.2 1.5 hypothetical protein (RefSeq) compare
Sama_2180 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1680 +0.2 1.2 thioredoxin family protein (RefSeq) compare
Sama_1892 +0.2 1.3 putative sulfite oxidase subunit YedZ (RefSeq) compare
Sama_0463 +0.2 1.6 MSHA pilin protein MshD (RefSeq) compare
Sama_1345 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_2434 +0.2 0.7 exodeoxyribonuclease VII, small subunit (RefSeq) compare
Sama_2959 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2778 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_2813 djlA +0.2 1.1 Dna-J like membrane chaperone protein (RefSeq) compare
Sama_2414 +0.2 1.5 OsmC family protein (RefSeq) compare
Sama_3092 +0.2 1.3 phosphocarrier protein NPR (RefSeq) compare
Sama_2751 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_2639 +0.2 1.4 binding-protein-dependent transport systems inner membrane component (RefSeq) compare
Sama_2962 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_1578 +0.2 1.2 small-conductance mechanosensitive channel (RefSeq) compare
Sama_2223 +0.2 0.6 UTP--glucose-1-phosphate uridylyltransferase (RefSeq) compare
Sama_2651 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1857 +0.2 0.8 thiamine biosynthesis protein ThiS (RefSeq) compare
Sama_0192 +0.2 1.5 DNA-binding transcriptional repressor FabR (RefSeq) compare
Sama_3403 +0.2 1.8 proline iminopeptidase, putative (RefSeq) compare
Sama_1306 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1483 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_0676 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_0932 +0.2 1.1 type IV pilus biogenesis protein PilE (RefSeq) compare
Sama_1878 +0.2 1.4 IS3 family transposase (RefSeq) compare
Sama_1891 +0.2 1.3 GGDEF family protein (RefSeq) compare
Sama_1107 +0.2 1.1 fructose-2;6-bisphosphatase (RefSeq) compare
Sama_2873 +0.2 0.5 hypothetical protein (RefSeq) compare
Sama_1944 +0.2 1.2 imidazole glycerol-phosphate dehydratase/histidinol phosphatase (RefSeq) compare
Sama_R0101 +0.2 1.0 tRNA-Gln (RefSeq) compare
Sama_2313 flgG +0.2 1.2 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2041 +0.2 0.8 type IV pilus biogenesis protein pilZ (RefSeq) compare
Sama_2641 +0.2 1.6 polyamine ABC transporter, ATP-binding protein (RefSeq) compare
Sama_1174 +0.2 1.5 glutamate--ammonia ligase (RefSeq) compare
Sama_1930 minC +0.2 0.8 septum formation inhibitor (RefSeq) compare
Sama_2234 +0.2 0.9 uncharacterized lipoprotein NlpE involved in copper resistance (RefSeq) compare
Sama_0139 +0.2 1.7 secretion protein HlyD (RefSeq) compare
Sama_1601 +0.2 0.5 hypothetical protein (RefSeq) compare
Sama_1744 +0.2 1.2 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) compare
Sama_1492 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_2904 +0.2 1.4 formate-dependent nitrite reductase, nrfD protein (RefSeq) compare
Sama_2803 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1850 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_1449 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_3162 +0.2 1.3 response regulator receiver protein (RefSeq) compare
Sama_0899 +0.2 1.0 ribosomal subunit interface protein (RefSeq) compare
Sama_2730 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_1721 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_2853 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1965 +0.2 0.4 hypothetical protein (RefSeq) compare
Sama_2769 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_1967 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_1341 +0.2 0.7 alkylhydroperoxidase (RefSeq) compare
Sama_3473 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_0409 +0.2 1.5 hypothetical protein (RefSeq) compare
Sama_0691 +0.2 1.6 hypothetical protein (RefSeq) compare
Sama_2270 +0.2 1.0 FlhB domain-containing protein (RefSeq) compare
Sama_1775 +0.2 0.9 crcB protein (RefSeq) compare
Sama_1162 +0.2 1.2 GGDEF domain-containing protein (RefSeq) compare
Sama_1589 +0.2 1.3 adhesin-associated sorting protein (DUF1329) (from data) compare
Sama_0073 +0.2 1.5 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Sama_0645 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_2716 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_0122 +0.2 1.1 ABC transporter, ATP-binding protein (RefSeq) compare
Sama_1203 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_0255 +0.2 1.7 acetylornithine deacetylase (RefSeq) compare
Sama_3405 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_3089 +0.2 1.2 ribosomal subunit interface protein (RefSeq) compare
Sama_1945 hisH +0.2 0.8 imidazole glycerol phosphate synthase subunit HisH (RefSeq) compare
Sama_1134 purU +0.2 1.4 formyltetrahydrofolate deformylase (RefSeq) compare
Sama_1069 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_0500 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1707 +0.2 0.9 protein-methionine-S-oxide reductase (RefSeq) compare
Sama_3487 +0.2 1.2 hypothetical protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella amazonensis SB2B in lb experiments