Experiment set2H39 for Pseudomonas stutzeri RCH2

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_1567 -5.4 -3.7 Transcriptional regulator compare
Psest_0152 -5.2 -3.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -5.0 -6.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2324 -4.8 -6.6 hypothetical protein compare
Psest_0279 -4.8 -3.3 methionine biosynthesis protein MetW compare
Psest_2578 -4.6 -4.5 O-succinylhomoserine sulfhydrylase compare
Psest_1765 -4.4 -4.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3647 -4.4 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_2590 -4.3 -1.5 3-isopropylmalate dehydratase, small subunit compare
Psest_3866 -4.3 -11.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2325 -4.3 -5.9 alpha-L-glutamate ligase-related protein compare
Psest_1724 -4.3 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3864 -4.2 -11.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3384 -4.2 -5.7 glutamate 5-kinase compare
Psest_1813 -4.2 -8.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2591 -4.1 -2.9 3-isopropylmalate dehydratase, large subunit compare
Psest_2584 -4.1 -2.8 Phosphoribosylanthranilate isomerase compare
Psest_1814 -4.1 -16.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2323 -4.1 -11.4 Uncharacterized protein conserved in archaea compare
Psest_0155 -4.1 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1853 -4.0 -8.5 MoxR-like ATPases compare
Psest_3648 -4.0 -6.0 anthranilate phosphoribosyltransferase compare
Psest_3960 -3.9 -2.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0280 -3.9 -11.3 homoserine O-acetyltransferase compare
Psest_3299 -3.9 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1037 -3.9 -3.7 acetolactate synthase, small subunit compare
Psest_1772 -3.8 -2.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3650 -3.8 -8.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0508 -3.7 -7.8 gamma-glutamyl phosphate reductase compare
Psest_0419 -3.6 -21.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
Psest_2579 -3.6 -2.5 amidophosphoribosyltransferase compare
Psest_3298 -3.5 -7.9 histidinol dehydrogenase compare
Psest_0062 -3.5 -5.8 tryptophan synthase, alpha subunit compare
Psest_3721 -3.4 -6.9 Malic enzyme compare
Psest_1851 -3.4 -9.3 Uncharacterized protein conserved in bacteria conserved
Psest_0442 -3.4 -7.2 ATPases of the AAA+ class compare
Psest_1812 -3.4 -13.5 pseudaminic acid CMP-transferase compare
Psest_1640 -3.4 -10.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1295 -3.3 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1260 -3.3 -7.6 type IV pilus biogenesis/stability protein PilW compare
Psest_0461 -3.2 -8.2 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0170 -3.2 -5.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2014 -3.2 -10.2 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_1163 -3.1 -2.2 diguanylate cyclase (GGDEF) domain compare
Psest_1452 -3.1 -3.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3944 -3.1 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1815 -3.1 -15.3 pseudaminic acid synthase compare
Psest_2589 -3.0 -10.0 3-isopropylmalate dehydrogenase compare
Psest_1473 -3.0 -8.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2719 -3.0 -4.5 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1474 -2.9 -2.0 phosphoribosylaminoimidazole synthetase compare
Psest_0367 -2.9 -1.7 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0063 -2.8 -3.4 tryptophan synthase, beta subunit compare
Psest_0489 -2.8 -1.9 phosphoserine phosphatase SerB compare
Psest_4298 -2.8 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3288 -2.7 -10.8 type IV-A pilus assembly ATPase PilB compare
Psest_0285 -2.7 -9.0 pilus retraction protein PilT compare
Psest_4097 -2.7 -10.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1012 -2.6 -1.8 Signal transduction histidine kinase compare
Psest_2988 -2.6 -6.6 aspartate kinase, monofunctional class compare
Psest_3810 -2.6 -1.8 orotate phosphoribosyltransferase compare
Psest_0218 -2.6 -1.8 Acyl-CoA hydrolase compare
Psest_3649 -2.5 -7.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0411 -2.5 -8.8 biotin synthetase compare
Psest_1809 -2.5 -8.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1818 -2.5 -11.2 GDP-mannose 4,6-dehydratase compare
Psest_0533 -2.5 -3.7 Sel1 repeat. compare
Psest_0445 -2.4 -11.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3716 -2.4 -8.7 Tfp pilus assembly protein PilP compare
Psest_1496 -2.3 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_0759 -2.3 -1.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1013 -2.3 -2.2 phosphoribosylamine--glycine ligase compare
Psest_2561 -2.3 -1.1 hypothetical protein compare
Psest_0262 -2.3 -16.7 PAS domain S-box compare
Psest_0393 -2.3 -3.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3926 -2.3 -11.4 GTP-binding protein TypA/BipA compare
Psest_3123 -2.3 -3.1 dihydroorotase, homodimeric type compare
Psest_2967 -2.3 -2.3 flagellar basal-body rod protein FlgC compare
Psest_1810 -2.2 -14.2 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_0462 -2.2 -19.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_0296 -2.2 -3.9 glutathione synthetase, prokaryotic compare
Psest_1825 -2.1 -10.3 Predicted nucleoside-diphosphate sugar epimerases compare
Psest_0326 -2.1 -10.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0346 -2.1 -2.8 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3419 -2.1 -7.9 Predicted transcriptional regulators compare
Psest_2312 -2.1 -7.4 Small-conductance mechanosensitive channel compare
Psest_1679 -2.1 -1.8 ribonuclease, Rne/Rng family compare
Psest_1139 -2.1 -3.7 PAS domain S-box compare
Psest_3715 -2.0 -11.7 type IV pilus secretin (or competence protein) PilQ compare
Psest_3718 -2.0 -4.4 Tfp pilus assembly protein PilN compare
Psest_3159 -2.0 -6.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3204 -2.0 -8.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0297 -2.0 -4.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3129 -2.0 -1.8 tyrosine recombinase XerD compare
Psest_0491 -2.0 -7.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3963 -2.0 -11.0 PAS domain S-box compare
Psest_1822 -2.0 -7.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1695 -2.0 -2.9 Tfp pilus assembly protein PilZ compare
Psest_0313 -2.0 -3.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0193 -1.9 -0.9 conserved hypothetical protein compare
Psest_4345 -1.9 -8.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3002 -1.9 -1.5 Putative translation initiation inhibitor, yjgF family compare
Psest_0298 -1.9 -4.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1703 -1.9 -7.0 Uncharacterized protein conserved in bacteria conserved
Psest_0687 -1.9 -3.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2358 -1.9 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0057 -1.9 -4.0 Predicted transcriptional regulators compare
Psest_2232 -1.8 -11.7 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4297 -1.8 -6.8 PAS domain S-box compare
Psest_3322 -1.8 -13.4 TIGR02099 family protein compare
Psest_2586 -1.8 -12.2 FimV N-terminal domain compare
Psest_3717 -1.8 -4.9 Tfp pilus assembly protein PilO compare
Psest_0300 -1.8 -5.0 Methyl-accepting chemotaxis protein compare
Psest_0248 -1.8 -4.6 Transcriptional regulator compare
Psest_0465 -1.8 -12.5 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1821 -1.8 -10.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2643 -1.7 -2.6 Beta-glucosidase-related glycosidases compare
Psest_0697 -1.7 -2.9 ribosomal protein L9 compare
Psest_3795 -1.7 -7.1 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2539 -1.7 -3.0 adenine phosphoribosyltransferase compare
Psest_3732 -1.7 -7.1 polyphosphate kinase 1 compare
Psest_1527 -1.6 -9.8 Na+/proline symporter compare
Psest_2756 -1.6 -1.3 hypothetical protein compare
Psest_2001 -1.6 -2.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1824 -1.6 -2.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_4363 -1.6 -6.0 ATPases involved in chromosome partitioning compare
Psest_0257 -1.6 -2.5 Predicted Zn-dependent peptidases compare
Psest_2764 -1.6 -1.1 hypothetical protein compare
Psest_3532 -1.6 -6.8 Peptidase propeptide and YPEB domain. compare
Psest_1743 -1.6 -4.8 Chemotaxis protein histidine kinase and related kinases compare
Psest_0259 -1.5 -1.5 cell division ATP-binding protein FtsE compare
Psest_2714 -1.5 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_2612 -1.5 -3.4 hypothetical protein compare
Psest_1918 -1.5 -3.9 Calcineurin-like phosphoesterase. compare
Psest_1065 -1.4 -1.6 hypothetical protein compare
Psest_2946 -1.4 -3.7 septum site-determining protein MinD compare
Psest_2864 -1.4 -3.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0347 -1.4 -8.9 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_3297 -1.4 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0719 -1.4 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2708 -1.4 -6.5 transaldolase compare
Psest_0414 -1.4 -3.8 biotin biosynthesis protein BioC compare
Psest_3213 -1.4 -5.3 acetate kinase compare
Psest_3214 -1.4 -4.9 phosphate acetyltransferase compare
Psest_0464 -1.4 -9.1 Mannosyltransferase OCH1 and related enzymes compare
Psest_1463 -1.4 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0146 -1.3 -5.9 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_1947 -1.3 -0.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1989 -1.3 -4.1 Transcriptional regulators compare
Psest_3719 -1.3 -4.6 type IV pilus assembly protein PilM compare
Psest_3375 -1.3 -6.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3180 -1.3 -6.9 Exonuclease I compare
Psest_0737 -1.3 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_1359 -1.3 -4.2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2218 -1.3 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_3637 -1.3 -3.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2648 -1.3 -1.3 hypothetical protein compare
Psest_3351 -1.3 -4.8 peptide chain release factor 3 compare
Psest_0030 -1.3 -1.4 Putative NADH-flavin reductase compare
Psest_3092 -1.3 -1.6 ribonuclease III, bacterial compare
Psest_0066 -1.2 -1.4 Protein of unknown function (DUF3060). compare
Psest_1075 -1.2 -2.7 Predicted transcriptional regulators compare
Psest_2903 -1.2 -2.0 Site-specific recombinase XerD compare
Psest_4191 -1.2 -1.8 Transcriptional regulator compare
Psest_1447 -1.2 -3.9 Putative threonine efflux protein compare
Psest_1491 -1.2 -2.5 Cold shock proteins compare
Psest_0837 -1.2 -1.9 Putative lipid carrier protein compare
Psest_1748 -1.2 -4.8 CheW-like domain. compare
Psest_0216 -1.2 -2.7 Predicted permeases compare
Psest_0281 -1.2 -5.3 Dynamin family. compare
Psest_0705 -1.2 -7.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3904 -1.2 -0.5 hypothetical protein compare
Psest_1417 -1.2 -0.7 hypothetical protein compare
Psest_1031 -1.2 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_0354 -1.2 -6.6 Malate synthase G (EC 2.3.3.9) (from data) compare
Psest_0094 -1.2 -1.7 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3818 -1.2 -4.3 endoribonuclease L-PSP, putative compare
Psest_2641 -1.2 -7.0 Conserved secreted protein compare
Psest_0725 -1.2 -1.9 Negative regulator of beta-lactamase expression compare
Psest_2961 -1.2 -2.5 Flagellar basal-body P-ring protein compare
Psest_1144 -1.1 -3.6 AmpG-related permease compare
Psest_3806 -1.1 -4.3 Phosphomannomutase compare
Psest_2277 -1.1 -2.9 coenzyme PQQ biosynthesis protein A compare
Psest_3998 -1.1 -2.1 glutamate--cysteine ligase compare
Psest_0237 -1.1 -2.0 intracellular protease, PfpI family compare
Psest_1636 -1.1 -2.3 putative transporter, required for glycine utilization (from data) compare
Psest_2681 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1076 -1.1 -1.5 acetyl-CoA acetyltransferases compare
Psest_0851 -1.1 -4.4 Transcriptional regulators compare
Psest_0673 -1.1 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0993 -1.1 -6.0 Glucose-6-phosphate isomerase compare
Psest_0484 -1.1 -1.8 hypothetical protein compare
Psest_1241 -1.1 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3187 -1.1 -3.1 hypothetical protein compare
Psest_1823 -1.1 -6.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_2752 -1.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3809 -1.1 -3.0 hypothetical protein compare
Psest_2517 -1.1 -2.3 hypothetical protein compare
Psest_0691 -1.1 -6.4 ribonuclease R compare
Psest_2027 -1.1 -6.4 ATP-dependent Clp protease ATP-binding subunit clpA compare


Specific Phenotypes

For 44 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas stutzeri RCH2

For carbon source Sodium butyrate across organisms