Experiment set2H39 for Dechlorosoma suillum PS

Compare to:

R2A with sodium pyruvate

200 most important genes:

  gene name fitness t score description  
Dsui_3054 -4.4 -3.0 phosphate ABC transporter, permease protein PstA compare
Dsui_0401 -4.1 -2.8 nucleoside-diphosphate-sugar epimerase compare
Dsui_0007 -4.0 -2.7 cold shock protein compare
Dsui_0469 -3.4 -2.3 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_3457 -3.0 -2.0 K+ transporter compare
Dsui_0477 -2.7 -2.4 tol-pal system protein YbgF compare
Dsui_1446 -2.6 -3.2 succinyl-CoA synthetase, alpha subunit compare
Dsui_1445 -2.5 -3.8 succinyl-CoA synthetase, beta subunit compare
Dsui_0675 -2.4 -2.8 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_2752 -2.3 -1.6 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_1827 -2.2 -2.1 hypothetical protein compare
Dsui_2402 -2.0 -1.7 hypothetical protein compare
Dsui_1577 -2.0 -1.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_0745 -2.0 -1.9 membrane-associated lipoprotein involved in thiamine biosynthesis compare
Dsui_2466 -1.9 -2.2 ATP dependent DNA ligase-like protein compare
Dsui_2562 -1.8 -2.4 hypothetical protein compare
Dsui_3352 -1.8 -2.4 cAMP-binding protein compare
Dsui_2286 -1.8 -2.4 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_2867 -1.6 -1.9 surface antigen family protein compare
Dsui_2981 -1.6 -1.1 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_2556 -1.6 -3.5 hypothetical protein compare
Dsui_0399 -1.6 -3.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_0725 -1.6 -2.5 putative hydrolase of the alpha/beta superfamily compare
Dsui_2047 -1.6 -2.9 chromate transporter, chromate ion transporter family compare
Dsui_0391 -1.6 -1.5 Protein of unknown function (DUF3426) compare
Dsui_1576 -1.5 -1.7 dihydrolipoamide dehydrogenase compare
Dsui_1830 -1.4 -1.8 Yip1 domain protein compare
Dsui_2563 -1.4 -2.7 hypothetical protein compare
Dsui_2600 -1.4 -2.8 hypothetical protein compare
Dsui_2496 -1.4 -1.4 Membrane transport protein MerF compare
Dsui_0459 -1.4 -2.0 DNA polymerase I compare
Dsui_3063 -1.4 -1.8 transcription elongation factor GreA compare
Dsui_2359 -1.4 -1.7 hypothetical protein compare
Dsui_1393 -1.4 -2.5 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_0025 -1.3 -2.0 hypothetical protein compare
Dsui_2781 -1.3 -2.1 PAS domain S-box compare
Dsui_2920 -1.3 -1.7 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_0434 -1.3 -2.4 ribonuclease, Rne/Rng family compare
Dsui_0465 -1.3 -2.1 ADP-heptose:LPS heptosyltransferase compare
Dsui_3120 -1.3 -2.8 cAMP-binding protein compare
Dsui_1893 -1.3 -1.6 putative membrane protein compare
Dsui_0255 -1.2 -1.1 hypothetical protein compare
Dsui_1675 -1.2 -2.1 hypothetical protein compare
Dsui_3443 -1.2 -2.4 RND family efflux transporter, MFP subunit compare
Dsui_3180 -1.2 -2.6 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1621 -1.2 -2.1 diacylglycerol kinase compare
Dsui_1381 -1.2 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_2599 -1.2 -2.5 hypothetical protein compare
Dsui_0614 -1.1 -1.7 hypothetical protein compare
Dsui_2604 -1.1 -2.1 hypothetical protein compare
Dsui_2908 -1.0 -2.5 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_2331 -1.0 -1.6 heat shock protein compare
Dsui_3139 -1.0 -1.8 outer membrane assembly lipoprotein YfgL compare
Dsui_0658 -1.0 -2.2 chemotaxis signal transduction protein compare
Dsui_2138 -1.0 -1.2 putative esterase compare
Dsui_2911 -1.0 -1.6 cation/cationic drug transporter compare
Dsui_2042 -1.0 -1.7 cystathionine beta-lyase/cystathionine gamma-synthase compare
Dsui_0280 -1.0 -1.5 F subunit of K+-transporting ATPase (Potass_KdpF) compare
Dsui_2326 -1.0 -1.1 hypothetical protein compare
Dsui_1578 -1.0 -2.5 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_0613 -1.0 -1.0 uncharacterized protein SCO1/SenC/PrrC compare
Dsui_0552 -0.9 -1.5 nitrogen fixation protein NifX compare
Dsui_2086 -0.9 -1.6 cytochrome c compare
Dsui_2454 -0.9 -2.5 Positive regulator of sigma E activity compare
Dsui_0032 -0.9 -1.3 NAD-dependent protein deacetylase, SIR2 family compare
Dsui_2189 -0.9 -2.1 acyl-CoA synthetase (NDP forming) compare
Dsui_0949 -0.9 -1.3 hypothetical protein compare
Dsui_2085 -0.9 -1.8 NADPH-dependent FMN reductase compare
Dsui_0432 -0.9 -1.5 hypothetical protein compare
Dsui_0393 -0.9 -1.8 glycosyltransferase compare
Dsui_1325 -0.9 -1.6 ADP-ribose pyrophosphatase compare
Dsui_2368 -0.8 -2.0 serine O-acetyltransferase compare
Dsui_2666 -0.8 -1.7 putative transcriptional regulator compare
Dsui_2355 -0.8 -1.2 cytochrome B561 compare
Dsui_1947 -0.8 -0.9 nucleotide sugar dehydrogenase compare
Dsui_2694 -0.8 -1.6 ribosomal protein S2 compare
Dsui_2352 -0.8 -1.3 hypothetical protein compare
Dsui_2457 -0.8 -3.3 GTP-binding protein LepA compare
Dsui_0707 -0.8 -1.5 protein RecA compare
Dsui_2316 -0.8 -1.0 hypothetical protein compare
Dsui_2025 -0.8 -1.9 RND family efflux transporter, MFP subunit compare
Dsui_1462 -0.8 -0.9 ABC-type antimicrobial peptide transport system, ATPase component compare
Dsui_2811 -0.8 -1.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Dsui_1978 -0.8 -1.0 putative lipoprotein compare
Dsui_0499 -0.8 -1.2 DNA-directed RNA polymerase, omega subunit compare
Dsui_0278 -0.8 -1.8 K+-transporting ATPase, B subunit compare
Dsui_0176 -0.8 -2.2 ribosome modulation factor compare
Dsui_2559 -0.8 -1.8 Protein of unknown function (DUF2523) compare
Dsui_0200 -0.8 -2.4 hypothetical protein compare
Dsui_3257 -0.7 -3.6 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities compare
Dsui_0172 -0.7 -2.3 hypothetical protein compare
Dsui_2221 -0.7 -2.3 putative ATPase compare
Dsui_3094 -0.7 -1.4 putative HD superfamily hydrolase compare
Dsui_1888 -0.7 -1.6 putative domain HDIG-containing protein compare
Dsui_3455 -0.7 -2.4 HD-GYP domain-containing protein compare
Dsui_3339 -0.7 -2.8 branched-chain amino acid aminotransferase, group I compare
Dsui_1670 -0.7 -1.2 cytochrome c peroxidase compare
Dsui_2401 -0.7 -1.4 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0195 -0.7 -2.8 Caudovirus prohead protease compare
Dsui_0215 -0.7 -1.1 hypothetical protein compare
Dsui_0657 -0.7 -3.5 methyl-accepting chemotaxis protein compare
Dsui_1523 -0.7 -1.9 drug resistance transporter, EmrB/QacA subfamily compare
Dsui_3072 -0.7 -2.0 DNA repair protein RecN compare
Dsui_0846 -0.7 -2.5 glucose-inhibited division protein A compare
Dsui_0685 -0.7 -1.1 glutathione S-transferase compare
Dsui_3484 -0.7 -0.8 putative permease compare
Dsui_3240 -0.7 -2.6 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_1518 -0.7 -2.5 putative permease compare
Dsui_1015 -0.7 -2.5 hypothetical protein compare
Dsui_2767 -0.7 -1.2 glutaredoxin-like protein compare
Dsui_2882 -0.7 -1.6 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_2826 -0.7 -1.3 hypothetical protein compare
Dsui_0198 -0.7 -2.0 phage conserved hypothetical protein, phiE125 gp8 family compare
Dsui_1227 -0.7 -1.8 DNA/RNA helicase, superfamily I compare
Dsui_3428 -0.7 -1.2 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Dsui_0520 -0.7 -4.2 transcriptional regulator compare
Dsui_1275 -0.7 -1.6 protein-export chaperone SecB compare
Dsui_0205 -0.7 -1.8 Conserved hypothetical protein 2217 (DUF2460) compare
Dsui_1025 -0.7 -2.3 putative Zn-dependent peptidase compare
Dsui_2953 -0.7 -2.7 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0099 -0.6 -1.6 putative periplasmic or secreted lipoprotein compare
Dsui_2956 -0.6 -1.1 ABC-type cobalt transport system, periplasmic component compare
Dsui_1149 -0.6 -1.7 Zn-dependent protease with chaperone function compare
Dsui_2935 -0.6 -1.0 NAD/NADP transhydrogenase alpha subunit compare
Dsui_0175 -0.6 -0.9 hypothetical protein compare
Dsui_0677 -0.6 -1.3 hypothetical protein compare
Dsui_1970 -0.6 -1.8 metalloendopeptidase-like membrane protein compare
Dsui_0425 -0.6 -1.5 putative Fe-S oxidoreductase compare
Dsui_0271 -0.6 -1.5 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0837 -0.6 -1.6 tRNA modification GTPase TrmE compare
Dsui_1395 -0.6 -1.7 MSHA-type pilus biogenesis protein MshL compare
Dsui_2976 -0.6 -1.5 Fe2+-dicitrate sensor, membrane component compare
Dsui_2305 -0.6 -2.6 electron transfer flavoprotein, beta subunit compare
Dsui_2651 -0.6 -0.9 ankyrin repeat-containing protein compare
Dsui_1897 -0.6 -0.9 hypothetical protein compare
Dsui_0209 -0.6 -1.4 hypothetical protein compare
Dsui_1945 -0.6 -2.7 uncharacterized integral membrane protein compare
Dsui_0193 -0.6 -2.5 putative phage protein, putative large terminase compare
Dsui_2484 -0.6 -1.2 hydroxyacylglutathione hydrolase compare
Dsui_2304 -0.6 -1.5 electron transfer flavoprotein, alpha subunit compare
Dsui_1198 -0.6 -2.4 apolipoprotein N-acyltransferase compare
Dsui_2041 -0.6 -1.3 enoyl-CoA hydratase/carnithine racemase compare
Dsui_1874 -0.6 -1.8 hypothetical protein compare
Dsui_1796 -0.6 -2.9 phage/plasmid-related protein TIGR03299 compare
Dsui_1388 -0.6 -1.5 hypothetical protein compare
Dsui_3268 -0.6 -1.2 exodeoxyribonuclease VII, large subunit compare
Dsui_1248 -0.6 -0.8 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase compare
Dsui_0706 -0.6 -0.6 hypothetical protein compare
Dsui_1496 -0.6 -3.7 YfdX protein compare
Dsui_1605 -0.6 -1.3 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_2578 -0.6 -1.3 hypothetical protein compare
Dsui_2046 -0.6 -1.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_1609 -0.6 -0.9 Thiopurine S-methyltransferase (TPMT) compare
Dsui_2180 -0.6 -0.8 hypothetical protein compare
Dsui_0850 -0.6 -2.7 hypothetical protein compare
Dsui_2243 -0.6 -1.4 hypothetical protein compare
Dsui_1042 -0.6 -1.5 metal-dependent hydrolase compare
Dsui_2703 -0.6 -1.3 chromosome segregation protein SMC compare
Dsui_1271 -0.6 -3.0 membrane-bound metallopeptidase compare
Dsui_1304 -0.6 -1.4 cytochrome c553 compare
Dsui_1600 -0.6 -2.7 putative enzyme of heme biosynthesis compare
Dsui_0500 -0.6 -1.4 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_2615 -0.5 -1.9 hypothetical protein compare
Dsui_2501 -0.5 -0.9 TniQ protein compare
Dsui_2560 -0.5 -1.1 zonula occludens toxin compare
Dsui_3095 -0.5 -0.7 Protein of unknown function (DUF2726) compare
Dsui_2540 -0.5 -0.9 ribosomal protein S12 methylthiotransferase RimO compare
Dsui_3436 -0.5 -1.0 beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase compare
Dsui_3327 -0.5 -1.0 cytochrome b compare
Dsui_1841 -0.5 -1.3 hypothetical protein compare
Dsui_3231 -0.5 -1.5 hypothetical protein compare
Dsui_2601 -0.5 -1.5 hypothetical protein compare
Dsui_2966 -0.5 -0.7 cobalamin biosynthesis protein CbiG compare
Dsui_2823 -0.5 -1.1 DNA internalization-related competence protein ComEC/Rec2 compare
Dsui_0489 -0.5 -1.4 DNA-binding regulatory protein, YebC/PmpR family compare
Dsui_2269 -0.5 -1.4 SOS regulatory protein LexA compare
Dsui_2277 -0.5 -1.1 Rhs element Vgr protein compare
Dsui_3081 -0.5 -0.5 chaperone protein DnaK compare
Dsui_3220 -0.5 -0.7 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_3464 -0.5 -0.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Dsui_2500 -0.5 -1.4 site-specific recombinase, DNA invertase Pin compare
Dsui_1482 -0.5 -1.2 hypothetical protein compare
Dsui_2233 -0.5 -2.2 catalase/peroxidase HPI compare
Dsui_0742 -0.5 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
Dsui_2117 -0.5 -0.9 acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Dsui_0528 -0.5 -1.1 hypothetical protein compare
Dsui_3258 -0.5 -1.6 mannose-6-phosphate isomerase compare
Dsui_1579 -0.5 -2.0 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_3279 -0.5 -1.2 formate dehydrogenase family accessory protein FdhD compare
Dsui_1662 -0.5 -1.4 Oxidoreductase NAD-binding domain/Flavodoxin compare
Dsui_1273 -0.5 -1.1 Rhodanese-related sulfurtransferase compare
Dsui_2094 -0.5 -1.1 putative autotransporter protein compare
Dsui_2591 -0.5 -1.9 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_0788 -0.5 -1.8 phosphosulfolactate phosphohydrolase-like enzyme compare
Dsui_0961 -0.5 -1.8 RNA polymerase sigma factor, SigZ family compare
Dsui_1321 -0.5 -1.8 ABC-type uncharacterized transport system, permease component compare
Dsui_0308 -0.5 -1.2 Major Facilitator Superfamily transporter compare
Dsui_3253 -0.5 -2.2 Protein of unknown function (DUF3579) compare
Dsui_1969 -0.5 -2.4 protein-L-isoaspartate and D-aspartate O-methyltransferase compare
Dsui_0567 -0.5 -0.8 molybdenum-pterin binding domain protein compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium pyruvate across organisms