Experiment set2H38 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Spectinomycin dihydrochloride pentahydrate 0.00625 mg/ml

Group: stress
Media: marine_broth_2216 + Spectinomycin dihydrochloride pentahydrate (0.00625 mg/ml)
Culturing: Phaeo_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jordan on 8/5/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 617 C3,C4

Specific Phenotypes

For 22 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Phaeobacter inhibens DSM 17395

For stress Spectinomycin dihydrochloride pentahydrate across organisms

SEED Subsystems

Subsystem #Specific
Flagellum 11
Flagellar motility 5
ABC transporter alkylphosphonate (TC 3.A.1.9.1) 1
Allantoin Utilization 1
D-galactarate, D-glucarate and D-glycerate catabolism 1
Flagellum in Campylobacter 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Glycine and Serine Utilization 1
Photorespiration (oxidative C2 cycle) 1
Serine-glyoxylate cycle 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
photorespiration I 9 7 1
photorespiration III 9 7 1