Experiment set2H38 for Dechlorosoma suillum PS

Compare to:

R2A with sodium pyruvate

200 most important genes:

  gene name fitness t score description  
Dsui_1446 -4.3 -2.9 succinyl-CoA synthetase, alpha subunit compare
Dsui_1445 -4.0 -2.8 succinyl-CoA synthetase, beta subunit compare
Dsui_0401 -3.8 -2.6 nucleoside-diphosphate-sugar epimerase compare
Dsui_0007 -3.7 -2.5 cold shock protein compare
Dsui_3130 -3.5 -1.9 tRNA-Leu compare
Dsui_3424 -3.4 -3.3 ATP:cob(I)alamin adenosyltransferase compare
Dsui_3081 -3.0 -2.0 chaperone protein DnaK compare
Dsui_1577 -2.8 -1.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_3484 -2.5 -1.7 putative permease compare
Dsui_0021 -2.5 -2.4 putative metalloendopeptidase compare
Dsui_2476 -2.5 -1.9 hypothetical protein compare
Dsui_1591 -2.4 -1.6 Xaa-Pro aminopeptidase compare
Dsui_0477 -2.3 -2.8 tol-pal system protein YbgF compare
Dsui_2826 -2.3 -2.2 hypothetical protein compare
Dsui_0399 -2.3 -4.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_0706 -2.2 -1.5 hypothetical protein compare
Dsui_1669 -2.2 -2.2 trypsin-like serine protease with C-terminal PDZ domain compare
Dsui_2945 -2.2 -3.4 hypothetical protein compare
Dsui_1381 -2.2 -1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_0553 -2.2 -2.5 putative nitrogen fixation protein compare
Dsui_2752 -2.1 -1.4 ABC-type multidrug transport system, ATPase and permease component compare
Dsui_2560 -2.0 -2.4 zonula occludens toxin compare
Dsui_0434 -2.0 -3.0 ribonuclease, Rne/Rng family compare
Dsui_2902 -2.0 -1.5 hypothetical protein compare
Dsui_2086 -1.9 -2.2 cytochrome c compare
Dsui_1827 -1.9 -1.7 hypothetical protein compare
Dsui_1248 -1.9 -1.4 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase compare
Dsui_0039 -1.9 -2.5 dimethyladenosine transferase compare
Dsui_0538 -1.9 -2.1 hypothetical protein compare
Dsui_1463 -1.9 -3.3 transcriptional activator of acetoin/glycerol metabolism compare
Dsui_0024 -1.8 -2.5 cytochrome c556 compare
Dsui_2326 -1.8 -1.4 hypothetical protein compare
Dsui_1037 -1.7 -1.2 ribosomal protein L25, Ctc-form compare
Dsui_3006 -1.7 -2.1 (NiFe) hydrogenase assembly chaperone, HybE family compare
Dsui_3207 -1.7 -1.4 ankyrin repeat-containing protein compare
Dsui_2555 -1.7 -1.8 Bacteriophage coat protein B compare
Dsui_2286 -1.6 -1.8 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_2563 -1.6 -2.6 hypothetical protein compare
Dsui_1970 -1.6 -3.3 metalloendopeptidase-like membrane protein compare
Dsui_0465 -1.6 -1.5 ADP-heptose:LPS heptosyltransferase compare
Dsui_0032 -1.6 -1.8 NAD-dependent protein deacetylase, SIR2 family compare
Dsui_2152 -1.6 -2.9 molybdenum cofactor synthesis domain protein compare
Dsui_1578 -1.6 -3.3 pyruvate dehydrogenase E1 component, homodimeric type compare
Dsui_3457 -1.5 -1.4 K+ transporter compare
Dsui_2600 -1.5 -2.7 hypothetical protein compare
Dsui_1537 -1.5 -1.8 DNA repair protein radc compare
Dsui_0015 -1.5 -1.9 putative signal-transduction protein containing cAMP-binding and CBS domains compare
Dsui_1819 -1.5 -2.4 4-oxalocrotonate tautomerase family enzyme compare
Dsui_1266 -1.5 -2.0 transcriptional regulator NrdR compare
Dsui_2981 -1.4 -0.9 electron transport complex, RnfABCDGE type, C subunit compare
Dsui_3531 -1.4 -1.5 Protein of unknown function (DUF3619) compare
Dsui_0687 -1.4 -1.9 Protein of unknown function (DUF2905) compare
Dsui_1682 -1.4 -1.8 biopolymer transport protein compare
Dsui_2047 -1.4 -2.3 chromate transporter, chromate ion transporter family compare
Dsui_0895 -1.4 -1.9 nitrogen regulatory protein PII compare
Dsui_0177 -1.4 -2.4 hypothetical protein compare
Dsui_0935 -1.3 -2.1 cytochrome c5 compare
Dsui_3431 -1.2 -1.9 Protein of unknown function (DUF3240) compare
Dsui_0391 -1.2 -1.1 Protein of unknown function (DUF3426) compare
Dsui_0499 -1.2 -1.1 DNA-directed RNA polymerase, omega subunit compare
Dsui_1198 -1.2 -3.6 apolipoprotein N-acyltransferase compare
Dsui_0025 -1.2 -1.5 hypothetical protein compare
Dsui_2079 -1.2 -2.7 histidine kinase compare
Dsui_1652 -1.2 -1.1 FeoA-like protein compare
Dsui_1462 -1.2 -1.6 ABC-type antimicrobial peptide transport system, ATPase component compare
Dsui_3149 -1.2 -2.1 electron transfer flavoprotein, alpha subunit compare
Dsui_2226 -1.2 -2.3 DNA-binding domain-containing protein, AraC-type compare
Dsui_2221 -1.2 -2.7 putative ATPase compare
Dsui_0489 -1.1 -1.9 DNA-binding regulatory protein, YebC/PmpR family compare
Dsui_1576 -1.1 -1.2 dihydrolipoamide dehydrogenase compare
Dsui_1947 -1.1 -1.1 nucleotide sugar dehydrogenase compare
Dsui_0202 -1.1 -1.5 hypothetical protein compare
Dsui_0469 -1.1 -1.2 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_1978 -1.1 -1.3 putative lipoprotein compare
Dsui_0270 -1.1 -1.6 transcriptional regulator compare
Dsui_2933 -1.1 -2.0 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_0871 -1.1 -1.2 hypothetical protein compare
Dsui_0540 -1.1 -2.0 L-threonine-O-3-phosphate decarboxylase compare
Dsui_1833 -1.1 -1.6 nitrate transport ATP-binding subunits C and D compare
Dsui_2172 -1.1 -1.2 transcriptional regulator compare
Dsui_2905 -1.1 -2.4 flagellin/flagellar hook associated protein compare
Dsui_0955 -1.1 -1.8 nitrogenase iron protein compare
Dsui_2853 -1.1 -2.9 PPIC-type PPIASE family protein compare
Dsui_1529 -1.1 -1.7 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0600 -1.1 -1.0 TIGR00251 family protein compare
Dsui_2783 -1.0 -1.8 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_0837 -1.0 -2.4 tRNA modification GTPase TrmE compare
Dsui_0552 -1.0 -1.3 nitrogen fixation protein NifX compare
Dsui_0176 -1.0 -2.0 ribosome modulation factor compare
Dsui_3156 -1.0 -2.1 putative permease compare
Dsui_0523 -1.0 -2.0 putative membrane protein compare
Dsui_0967 -1.0 -1.9 hypothetical protein compare
Dsui_1314 -1.0 -1.2 guanyl-specific ribonuclease Sa compare
Dsui_3443 -1.0 -1.7 RND family efflux transporter, MFP subunit compare
Dsui_0271 -1.0 -1.7 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2368 -1.0 -2.3 serine O-acetyltransferase compare
Dsui_0171 -1.0 -3.1 putative transcriptional regulator compare
Dsui_3440 -1.0 -1.6 Protein of unknown function (DUF2892) compare
Dsui_1004 -1.0 -0.6 conserved protein of DIM6/NTAB family compare
Dsui_2355 -1.0 -1.5 cytochrome B561 compare
Dsui_3097 -1.0 -1.4 O-6-methylguanine DNA methyltransferase compare
Dsui_0255 -1.0 -0.9 hypothetical protein compare
Dsui_0520 -0.9 -5.4 transcriptional regulator compare
Dsui_3343 -0.9 -1.4 putative hydrolase of the alpha/beta-hydrolase fold protein compare
Dsui_2703 -0.9 -1.7 chromosome segregation protein SMC compare
Dsui_2358 -0.9 -1.7 signal transduction histidine kinase compare
Dsui_3339 -0.9 -3.2 branched-chain amino acid aminotransferase, group I compare
Dsui_2995 -0.9 -1.5 hypothetical protein compare
Dsui_0548 -0.9 -2.2 putative transporter component compare
Dsui_1999 -0.9 -1.9 putative translation initiation inhibitor, yjgF family compare
Dsui_3521 -0.9 -2.6 membrane-fusion protein compare
Dsui_2818 -0.9 -2.3 hypothetical protein compare
Dsui_0554 -0.9 -1.5 uncharacterized conserved small protein containing a coiled-coil domain compare
Dsui_3524 -0.9 -2.2 signal transduction histidine kinase compare
Dsui_2606 -0.9 -1.8 soluble lytic murein transglycosylase-like protein compare
Dsui_1891 -0.9 -1.5 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase compare
Dsui_3327 -0.9 -1.3 cytochrome b compare
Dsui_0099 -0.9 -2.2 putative periplasmic or secreted lipoprotein compare
Dsui_0968 -0.9 -2.0 deoxyinosine 3'endonuclease (endonuclease V) compare
Dsui_0744 -0.9 -1.8 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_2559 -0.9 -1.3 Protein of unknown function (DUF2523) compare
Dsui_2756 -0.9 -0.9 hypothetical protein compare
Dsui_2295 -0.9 -1.1 transcriptional regulator compare
Dsui_2997 -0.9 -2.6 hypothetical protein compare
Dsui_2757 -0.9 -1.8 spermidine synthase compare
Dsui_2540 -0.9 -0.9 ribosomal protein S12 methylthiotransferase RimO compare
Dsui_2920 -0.9 -0.8 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_1890 -0.9 -2.1 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_0102 -0.9 -1.7 transcription elongation factor compare
Dsui_0641 -0.9 -0.7 putative rRNA methylase compare
Dsui_2249 -0.9 -1.8 signal transduction histidine kinase compare
Dsui_3323 -0.9 -1.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Dsui_2025 -0.8 -1.8 RND family efflux transporter, MFP subunit compare
Dsui_2115 -0.8 -1.8 transcriptional regulator compare
Dsui_2277 -0.8 -1.3 Rhs element Vgr protein compare
Dsui_0747 -0.8 -1.6 glutamate--cysteine ligase compare
Dsui_1488 -0.8 -2.0 putative metal-dependent hydrolase compare
Dsui_3467 -0.8 -1.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_2767 -0.8 -1.4 glutaredoxin-like protein compare
Dsui_0459 -0.8 -1.2 DNA polymerase I compare
Dsui_2562 -0.8 -0.9 hypothetical protein compare
Dsui_0671 -0.8 -2.0 arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase compare
Dsui_0901 -0.8 -1.9 hypothetical protein compare
Dsui_2005 -0.8 -1.4 DNA polymerase III epsilon subunit-like 3'-5' exonuclease compare
Dsui_2604 -0.8 -2.0 hypothetical protein compare
Dsui_1370 -0.8 -1.7 putative permease, DMT superfamily compare
Dsui_1356 -0.8 -1.0 hypothetical protein compare
Dsui_0656 -0.8 -4.0 chemotaxis protein histidine kinase-like protein compare
Dsui_2402 -0.8 -0.7 hypothetical protein compare
Dsui_3478 -0.8 -1.9 hypothetical protein compare
Dsui_2044 -0.8 -1.5 Rhodanese-related sulfurtransferase compare
Dsui_1845 -0.8 -1.6 phosphate/sulfate permease compare
Dsui_2924 -0.8 -1.1 hypothetical protein compare
Dsui_2457 -0.8 -2.8 GTP-binding protein LepA compare
Dsui_0684 -0.8 -3.3 putative nucleoside-diphosphate sugar epimerase compare
Dsui_1025 -0.8 -1.6 putative Zn-dependent peptidase compare
Dsui_0172 -0.8 -2.3 hypothetical protein compare
Dsui_2717 -0.8 -1.6 RNA polymerase-binding protein DksA compare
Dsui_2948 -0.8 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Dsui_0492 -0.8 -1.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Dsui_3115 -0.8 -1.4 hypothetical protein compare
Dsui_0650 -0.8 -1.2 hypothetical protein compare
Dsui_2501 -0.7 -1.5 TniQ protein compare
Dsui_2116 -0.7 -1.2 Fe-dependent oxidoreductase, alcohol dehydrogenase compare
Dsui_2868 -0.7 -1.3 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein compare
Dsui_1387 -0.7 -1.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
Dsui_2949 -0.7 -1.2 Fe2+-dicitrate sensor, membrane component compare
Dsui_1893 -0.7 -0.9 putative membrane protein compare
Dsui_1816 -0.7 -1.3 stringent starvation protein B compare
Dsui_2177 -0.7 -1.0 methyltransferase family protein compare
Dsui_0850 -0.7 -2.3 hypothetical protein compare
Dsui_0179 -0.7 -1.1 hypothetical protein compare
Dsui_2305 -0.7 -2.8 electron transfer flavoprotein, beta subunit compare
Dsui_2908 -0.7 -1.9 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_3352 -0.7 -1.1 cAMP-binding protein compare
Dsui_2083 -0.7 -1.8 hypothetical protein compare
Dsui_3028 -0.7 -0.9 coenzyme F420-reducing hydrogenase, gamma subunit compare
Dsui_2240 -0.7 -1.7 PAS domain S-box compare
Dsui_1400 -0.7 -2.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Dsui_2170 -0.7 -1.1 putative iron-regulated membrane protein compare
Dsui_1825 -0.7 -2.3 NAD(P)H-dependent nitrite reductase, large subunit compare
Dsui_3377 -0.7 -1.1 Uncharacterized protein conserved in bacteria (DUF2325) compare
Dsui_3027 -0.7 -2.1 coenzyme F420-reducing hydrogenase, alpha subunit compare
Dsui_0583 -0.7 -1.3 ABC-type Mn2+/Zn2+ transport system, permease component compare
Dsui_3523 -0.7 -1.5 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2666 -0.7 -1.4 putative transcriptional regulator compare
Dsui_1530 -0.7 -0.6 hypothetical protein compare
Dsui_2404 -0.7 -0.8 ribosomal-protein-alanine acetyltransferase compare
Dsui_2762 -0.7 -1.3 Protein of unknown function (DUF3617) compare
Dsui_2591 -0.7 -2.0 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_1312 -0.7 -1.1 NTP pyrophosphohydrolase compare
Dsui_2027 -0.7 -0.8 efflux transporter, outer membrane factor lipoprotein, NodT family compare
Dsui_0675 -0.7 -1.0 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_2615 -0.7 -2.4 hypothetical protein compare
Dsui_0734 -0.7 -1.2 acetyltransferase compare
Dsui_2869 -0.7 -1.5 transcriptional regulator compare
Dsui_3429 -0.7 -1.3 RND family efflux transporter, MFP subunit compare
Dsui_1059 -0.7 -0.7 thiamine monophosphate synthase compare
Dsui_2694 -0.7 -1.0 ribosomal protein S2 compare
Dsui_2333 -0.7 -1.2 uracil phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in carbon source experiments

For carbon source Sodium pyruvate across organisms