Experiment set2H35 for Pseudomonas stutzeri RCH2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -6.8 -6.6 Phosphotransferase System HPr (HPr) Family compare
Psest_0153 -5.9 -11.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -5.8 -5.7 methionine biosynthesis protein MetW compare
Psest_3647 -5.8 -5.6 Indole-3-glycerol phosphate synthase compare
Psest_0155 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -5.7 -4.0 anthranilate phosphoribosyltransferase compare
Psest_3862 -5.7 -14.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0508 -5.7 -7.8 gamma-glutamyl phosphate reductase compare
Psest_3931 -5.6 -3.9 Signal transduction histidine kinase, nitrogen specific compare
Psest_3650 -5.4 -6.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2650 -5.3 -5.2 hypothetical protein compare
Psest_0062 -5.3 -6.3 tryptophan synthase, alpha subunit compare
Psest_2088 -5.2 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3864 -5.1 -14.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3384 -5.1 -9.1 glutamate 5-kinase compare
Psest_3298 -5.0 -10.2 histidinol dehydrogenase compare
Psest_2578 -5.0 -15.1 O-succinylhomoserine sulfhydrylase compare
Psest_0152 -5.0 -6.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3649 -4.9 -7.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3226 -4.8 -2.0 Predicted membrane protein compare
Psest_3299 -4.8 -15.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -4.8 -17.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2584 -4.7 -7.9 Phosphoribosylanthranilate isomerase compare
Psest_2845 -4.7 -10.5 [Protein-PII] uridylyltransferase compare
Psest_3710 -4.7 -9.6 glutamate synthase small subunit family protein, proteobacterial compare
Psest_0326 -4.7 -16.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2579 -4.7 -7.8 amidophosphoribosyltransferase compare
Psest_0953 -4.6 -13.3 iron-sulfur cluster-binding protein compare
Psest_2591 -4.6 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psest_0687 -4.6 -9.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3932 -4.5 -3.1 nitrogen regulation protein NR(I) compare
Psest_0280 -4.5 -17.3 homoserine O-acetyltransferase compare
Psest_0325 -4.4 -17.2 Putative threonine efflux protein compare
Psest_0954 -4.4 -10.6 Fe-S oxidoreductase compare
Psest_1474 -4.3 -5.8 phosphoribosylaminoimidazole synthetase compare
Psest_3818 -4.2 -8.6 endoribonuclease L-PSP, putative compare
Psest_3178 -4.2 -6.4 formyltetrahydrofolate deformylase compare
Psest_2589 -4.2 -14.2 3-isopropylmalate dehydrogenase compare
Psest_3711 -4.2 -11.2 Glutamate synthase domain 2 compare
Psest_3297 -4.2 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3170 -4.2 -10.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1926 -4.0 -12.8 Uncharacterized anaerobic dehydrogenase conserved
Psest_1772 -4.0 -7.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1961 -4.0 -13.3 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2590 -4.0 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psest_3810 -4.0 -2.7 orotate phosphoribosyltransferase compare
Psest_0489 -3.9 -3.8 phosphoserine phosphatase SerB compare
Psest_1452 -3.9 -10.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1013 -3.9 -3.8 phosphoribosylamine--glycine ligase compare
Psest_0498 -3.9 -2.4 ribosome small subunit-dependent GTPase A compare
Psest_0952 -3.7 -4.9 Uncharacterized conserved protein compare
Psest_0063 -3.7 -7.0 tryptophan synthase, beta subunit compare
Psest_0313 -3.7 -3.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3944 -3.6 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1295 -3.6 -10.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1115 -3.5 -5.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3123 -3.4 -5.6 dihydroorotase, homodimeric type compare
Psest_1037 -3.3 -4.1 acetolactate synthase, small subunit compare
Psest_0411 -3.3 -12.3 biotin synthetase compare
Psest_2329 -3.1 -18.4 Transcriptional regulator compare
Psest_1496 -3.1 -3.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3159 -3.1 -10.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0170 -3.1 -9.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_1640 -3.0 -15.2 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3168 -2.9 -3.4 Molybdopterin converting factor, large subunit compare
Psest_0398 -2.8 -7.3 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0306 -2.8 -16.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3998 -2.7 -4.5 glutamate--cysteine ligase compare
Psest_1947 -2.7 -3.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3479 -2.7 -4.6 molybdenum cofactor synthesis domain compare
Psest_3480 -2.6 -2.5 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3092 -2.6 -3.4 ribonuclease III, bacterial compare
Psest_3338 -2.6 -3.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2511 -2.6 -9.1 molybdenum cofactor biosynthesis protein A, bacterial conserved
Psest_3943 -2.5 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0414 -2.5 -6.5 biotin biosynthesis protein BioC compare
Psest_0412 -2.4 -12.3 8-amino-7-oxononanoate synthase compare
Psest_1928 -2.4 -7.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Psest_1936 -2.4 -9.0 Response regulator with putative antiterminator output domain conserved
Psest_2104 -2.4 -3.8 IscR-regulated protein YhgI compare
Psest_1814 -2.4 -16.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1242 -2.3 -2.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1473 -2.3 -9.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1813 -2.3 -13.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0951 -2.3 -10.7 FAD/FMN-containing dehydrogenases compare
Psest_3960 -2.3 -2.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1815 -2.2 -15.0 pseudaminic acid synthase compare
Psest_2714 -2.2 -3.0 7-cyano-7-deazaguanine reductase compare
Psest_0719 -2.1 -8.6 Uncharacterized protein conserved in bacteria compare
Psest_4084 -2.1 -14.3 oxaloacetate decarboxylase alpha subunit compare
Psest_4191 -2.1 -3.9 Transcriptional regulator compare
Psest_1506 -2.1 -6.8 queuosine biosynthesis protein QueC compare
Psest_4085 -2.1 -13.7 Biotin carboxylase compare
Psest_0691 -2.1 -12.9 ribonuclease R compare
Psest_0209 -2.1 -1.5 membrane protein AbrB duplication compare
Psest_2645 -2.1 -9.6 Transcriptional regulator compare
Psest_0415 -2.1 -5.1 dethiobiotin synthase compare
Psest_3816 -2.0 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_2037 -1.9 -2.8 uroporphyrin-III C-methyltransferase compare
Psest_0413 -1.9 -7.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3904 -1.9 -1.1 hypothetical protein compare
Psest_0722 -1.9 -8.4 Predicted ATPase compare
Psest_4086 -1.9 -11.0 Transcriptional regulator compare
Psest_1292 -1.9 -8.3 monothiol glutaredoxin, Grx4 family compare
Psest_1925 -1.7 -9.0 uroporphyrin-III C-methyltransferase conserved
Psest_1812 -1.7 -9.6 pseudaminic acid CMP-transferase compare
Psest_0955 -1.7 -4.5 D,L-lactate:H+ symporter (from data) compare
Psest_2316 -1.7 -11.1 phosphoenolpyruvate synthase compare
Psest_1505 -1.7 -2.2 Organic radical activating enzymes compare
Psest_3047 -1.7 -1.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1511 -1.7 -3.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3377 -1.6 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1999 -1.5 -2.0 pseudouridine synthase compare
Psest_2079 -1.5 -11.3 Predicted permeases compare
Psest_2407 -1.5 -3.6 nitrite reductase [NAD(P)H], small subunit compare
Psest_1492 -1.4 -9.5 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1920 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1679 -1.4 -1.5 ribonuclease, Rne/Rng family compare
Psest_3129 -1.4 -1.3 tyrosine recombinase XerD compare
Psest_1241 -1.4 -6.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2719 -1.4 -5.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3777 -1.4 -3.2 diguanylate cyclase (GGDEF) domain compare
Psest_2333 -1.4 -1.4 Protein of unknown function (DUF3359). compare
Psest_0857 -1.3 -1.3 Membrane transporters of cations and cationic drugs compare
Psest_2406 -1.3 -7.2 nitrite reductase [NAD(P)H], large subunit conserved
Psest_3766 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0393 -1.3 -5.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0207 -1.3 -2.7 hypothetical protein compare
Psest_2864 -1.3 -4.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1315 -1.3 -1.8 hypothetical protein compare
Psest_3339 -1.3 -4.7 Signal transduction histidine kinase compare
Psest_2945 -1.3 -2.0 septum site-determining protein MinC compare
Psest_0998 -1.3 -3.9 poly(A) polymerase compare
Psest_2862 -1.3 -7.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2680 -1.3 -4.9 transcriptional regulator, BolA protein family compare
Psest_2585 -1.3 -1.0 pseudouridylate synthase I compare
Psest_1527 -1.2 -9.0 Na+/proline symporter compare
Psest_0378 -1.2 -1.8 Lactate dehydrogenase and related dehydrogenases compare
Psest_3008 -1.2 -2.6 cobyric acid synthase CobQ compare
Psest_2411 -1.2 -5.6 PAS domain S-box compare
Psest_1031 -1.2 -6.6 Uncharacterized protein conserved in bacteria compare
Psest_2612 -1.2 -3.3 hypothetical protein compare
Psest_4044 -1.2 -6.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0292 -1.2 -3.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3573 -1.2 -4.2 dTDP-4-dehydrorhamnose reductase compare
Psest_1058 -1.2 -3.1 ribosomal-protein-alanine acetyltransferase compare
Psest_3843 -1.2 -6.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1509 -1.2 -5.3 quinolinate synthetase complex, A subunit compare
Psest_2331 -1.2 -6.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2323 -1.2 -8.6 Uncharacterized protein conserved in archaea compare
Psest_3322 -1.1 -9.8 TIGR02099 family protein compare
Psest_1643 -1.1 -1.7 hypothetical protein compare
Psest_2001 -1.1 -3.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3626 -1.1 -4.2 hypothetical protein compare
Psest_2325 -1.1 -6.9 alpha-L-glutamate ligase-related protein compare
Psest_3988 -1.1 -6.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_4396 -1.1 -6.4 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2946 -1.1 -4.5 septum site-determining protein MinD compare
Psest_0327 -1.1 -3.4 Transcriptional regulator compare
Psest_2531 -1.1 -8.5 cytochrome c oxidase accessory protein FixG compare
Psest_4128 -1.1 -2.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2324 -1.1 -8.2 hypothetical protein compare
Psest_2643 -1.1 -2.9 Beta-glucosidase-related glycosidases compare
Psest_0718 -1.1 -3.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_4070 -1.0 -6.0 PAS domain S-box compare
Psest_2810 -1.0 -3.6 5'/3'-nucleotidase SurE compare
Psest_0212 -1.0 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_2232 -1.0 -8.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1750 -1.0 -3.1 Protein of unknown function (DUF2802). compare
Psest_2158 -1.0 -7.5 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0390 -1.0 -1.9 Short-chain dehydrogenases of various substrate specificities compare
Psest_4363 -1.0 -5.7 ATPases involved in chromosome partitioning compare
Psest_1284 -1.0 -3.8 exodeoxyribonuclease VII, large subunit compare
Psest_3721 -1.0 -4.8 Malic enzyme compare
Psest_3910 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_2809 -0.9 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1724 -0.9 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4219 -0.9 -1.7 DNA polymerase I compare
Psest_1103 -0.9 -3.1 GTP-binding protein YchF compare
Psest_0993 -0.9 -7.0 Glucose-6-phosphate isomerase compare
Psest_3771 -0.9 -7.0 probable ammonium transporter, marine subtype compare
Psest_1486 -0.9 -2.7 hypothetical protein compare
Psest_0359 -0.9 -1.8 Transcriptional regulators compare
Psest_0442 -0.9 -4.3 ATPases of the AAA+ class compare
Psest_0867 -0.9 -1.3 hypothetical protein compare
Psest_2872 -0.9 -1.5 protein RecA compare
Psest_0529 -0.9 -5.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2907 -0.9 -1.7 Protein of unknown function (DUF3618). compare
Psest_0138 -0.9 -5.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3490 -0.9 -2.7 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2848 -0.9 -3.1 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_3307 -0.9 -4.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0397 -0.9 -5.5 Small-conductance mechanosensitive channel compare
Psest_3303 -0.9 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1937 -0.9 -3.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0281 -0.9 -4.1 Dynamin family. compare
Psest_3767 -0.9 -3.3 tyrosine recombinase XerC compare
Psest_4345 -0.9 -5.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1417 -0.9 -1.1 hypothetical protein compare
Psest_1958 -0.9 -4.0 Glutaredoxin-like domain (DUF836). compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas stutzeri RCH2

For nitrogen source Sodium nitrate across organisms