Experiment set2H34 for Shewanella amazonensis SB2B

Compare to:

Minimal media with N-Acetyl-D-Glucosamine as carbon source

200 most detrimental genes:

  gene name fitness t score description  
Sama_3129 +3.5 16.8 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_0173 +2.6 8.2 general secretion pathway protein H (RefSeq) compare
Sama_0808 +2.6 6.0 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_2266 +2.5 16.8 amino acid/peptide transporter (RefSeq) compare
Sama_0367 +2.3 7.1 prepilin peptidase (RefSeq) compare
Sama_0176 +2.3 5.9 general secretion pathway protein K (RefSeq) compare
Sama_0170 +2.2 8.1 general secretion pathway protein E (RefSeq) compare
Sama_0169 +2.1 9.1 type II and III secretion system protein (RefSeq) compare
Sama_3018 sspA +2.1 14.4 stringent starvation protein A (RefSeq) compare
Sama_2406 +2.0 18.5 ATP-dependent protease, putative (RefSeq) compare
Sama_0171 +1.9 5.9 general secretion pathway protein F (RefSeq) compare
Sama_3066 +1.9 11.0 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_0106 +1.7 14.1 hypothetical protein (RefSeq) compare
Sama_1722 ansA +1.7 6.2 cytoplasmic asparaginase I (RefSeq) compare
Sama_1248 +1.6 9.6 hypothetical protein (RefSeq) compare
Sama_0108 +1.6 12.0 hypothetical protein (RefSeq) compare
Sama_3022 +1.5 7.4 hflC protein (RefSeq) compare
Sama_0109 +1.5 13.1 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_3023 +1.4 6.7 hflK protein (RefSeq) compare
Sama_0166 hslO +1.4 11.1 Hsp33-like chaperonin (RefSeq) compare
Sama_0379 +1.3 12.2 hypothetical protein (RefSeq) compare
Sama_3510 ompR +1.3 8.9 osmolarity response regulator (RefSeq) compare
Sama_0660 +1.3 8.6 hypothetical protein (RefSeq) compare
Sama_3511 envZ +1.2 10.0 osmolarity sensor protein (RefSeq) compare
Sama_3363 +1.2 4.9 hypothetical protein (RefSeq) compare
Sama_1909 +1.2 3.7 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_2587 +1.2 3.7 rRNA large subunit methyltransferase (RefSeq) compare
Sama_1770 +1.2 7.5 alanine dehydrogenase (RefSeq) compare
Sama_1454 +1.1 6.1 aminoglycoside phosphotransferase (RefSeq) compare
Sama_0899 +1.1 5.4 ribosomal subunit interface protein (RefSeq) compare
Sama_1352 +1.0 2.3 hypothetical protein (RefSeq) compare
Sama_1555 +1.0 4.2 hypothetical protein (RefSeq) compare
Sama_0184 +1.0 8.9 cysQ protein (RefSeq) compare
Sama_3083 +1.0 1.1 arabinose-5-phosphate isomerase (RefSeq) compare
Sama_0175 +1.0 3.0 general secretion pathway protein J (RefSeq) compare
Sama_1589 +1.0 6.5 adhesin-associated sorting protein (DUF1329) (from data) compare
Sama_2124 +1.0 4.0 pseudouridine synthase, Rsu (RefSeq) compare
Sama_1588 +0.9 7.2 putative adhesin (DUF1302) (from data) compare
Sama_1590 +0.9 6.1 adhesin-associated BNR repeat protein (from data) compare
Sama_0534 +0.9 5.6 hypothetical protein (RefSeq) compare
Sama_1325 +0.9 6.2 L-serine ammonia-lyase (RefSeq) compare
Sama_2160 +0.9 6.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) compare
Sama_1228 +0.9 2.5 peptidyl-prolyl cis-trans isomerase D (RefSeq) compare
Sama_0684 +0.9 7.7 aminopeptidase P, putative (RefSeq) compare
Sama_1085 +0.9 4.0 hypothetical protein (RefSeq) compare
Sama_0168 +0.9 2.6 general secretion pathway protein C (RefSeq) compare
Sama_2520 +0.9 7.2 putative transcriptional regulator (RefSeq) compare
Sama_2521 +0.9 5.5 agmatine deiminase (RefSeq) compare
Sama_2738 +0.9 3.9 thiol:disulfide interchange protein DsbC (RefSeq) compare
Sama_2328 +0.9 6.1 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_2267 +0.9 5.5 response regulator receiver protein (RefSeq) compare
Sama_1360 +0.8 5.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Sama_2562 +0.8 6.0 hypothetical protein (RefSeq) compare
Sama_1649 +0.8 2.2 glucose-specific PTS system component (RefSeq) compare
Sama_3259 +0.8 7.6 toxin secretion ATP-binding protein (RefSeq) compare
Sama_3214 +0.8 6.2 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_3258 +0.8 7.6 putative outer membrane adhesin like protein (RefSeq) compare
Sama_0396 zntR +0.8 2.7 zinc-responsive transcriptional regulator (RefSeq) compare
Sama_3260 +0.8 7.0 HlyD family secretion protein (RefSeq) compare
Sama_0465 +0.8 2.8 MSHA biogenesis protein MshP (RefSeq) compare
Sama_2341 +0.8 4.1 TetR family transcriptional regulator (RefSeq) compare
Sama_3170 metL +0.8 6.6 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_1591 +0.7 5.5 adhesin-associated MmpL efflux pump (from data) compare
Sama_2746 +0.7 6.4 sensory box protein, putative (RefSeq) compare
Sama_2564 +0.7 3.9 hypothetical protein (RefSeq) compare
Sama_1383 +0.7 6.1 prolyl oligopeptidase family protein (RefSeq) compare
Sama_3261 +0.7 6.3 type I secretion outer membrane protein, TolC (RefSeq) compare
Sama_2742 +0.7 4.4 ATP-dependent RNA helicase SrmB (RefSeq) compare
Sama_2250 +0.7 2.7 acetoacetyl-CoA reductase (RefSeq) compare
Sama_1346 +0.7 1.8 hypothetical protein (RefSeq) compare
Sama_1906 +0.7 5.5 HlyD family-like protein (RefSeq) compare
Sama_2336 +0.7 4.4 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_2312 flgH +0.7 3.8 flagellar basal body L-ring protein (RefSeq) compare
Sama_2313 flgG +0.7 3.9 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_1191 +0.7 2.6 hypothetical protein (RefSeq) compare
Sama_0397 +0.7 5.6 hypothetical protein (RefSeq) compare
Sama_0327 radC +0.7 5.1 DNA repair protein RadC (RefSeq) compare
Sama_2621 +0.7 2.4 malate dehydrogenase (RefSeq) compare
Sama_2335 +0.7 4.6 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_3138 +0.7 2.5 hypothetical protein (RefSeq) compare
Sama_1651 +0.7 2.3 phosphocarrier protein HPr (RefSeq) compare
Sama_1238 pspB +0.6 1.5 phage shock protein B (RefSeq) compare
Sama_0463 +0.6 4.2 MSHA pilin protein MshD (RefSeq) compare
Sama_1348 +0.6 1.2 hypothetical protein (RefSeq) compare
Sama_1616 +0.6 5.2 hypothetical protein (RefSeq) compare
Sama_3200 +0.6 4.4 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_1249 dinG +0.6 4.7 ATP-dependent DNA helicase DinG (RefSeq) compare
Sama_1541 +0.6 4.4 sensor protein PhoQ (RefSeq) compare
Sama_2119 +0.6 3.8 putative periplasmic protease (RefSeq) compare
Sama_3094 +0.6 2.5 hypothetical protein (RefSeq) compare
Sama_0451 +0.6 3.8 hypothetical protein (RefSeq) compare
Sama_1615 +0.6 5.0 hypothetical protein (RefSeq) compare
Sama_0450 +0.6 4.4 biogenesis protein MshI (RefSeq) compare
Sama_2314 flgF +0.6 3.3 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_2061 +0.6 2.6 MutT/nudix family protein (RefSeq) compare
Sama_3017 +0.6 4.3 ClpXP protease specificity-enhancing factor (RefSeq) compare
Sama_0454 +0.6 5.3 MSHA biogenesis protein MshL (RefSeq) compare
Sama_1760 +0.6 4.9 acetyltransferase (RefSeq) compare
Sama_0179 +0.6 3.4 general secretion pathway protein N (RefSeq) compare
Sama_0971 +0.6 4.2 nucleoside transporter (RefSeq) compare
Sama_2331 +0.6 4.2 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_2496 +0.6 3.3 C factor cell-cell signaling protein (RefSeq) compare
Sama_0458 +0.6 4.9 MSHA biogenesis protein MshG (RefSeq) compare
Sama_1905 +0.6 4.9 AcrB/AcrD/AcrF family protein (RefSeq) compare
Sama_0845 +0.6 1.9 hypothetical protein (RefSeq) compare
Sama_1978 +0.6 2.1 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq) compare
Sama_2190 secF +0.6 1.4 preprotein translocase subunit SecF (RefSeq) compare
Sama_2138 +0.6 1.5 YciI-like protein (RefSeq) compare
Sama_2301 +0.6 3.2 response regulator receiver protein (RefSeq) compare
Sama_2557 +0.6 2.9 putative nucleotide-binding protein (RefSeq) compare
Sama_0457 +0.6 4.8 MSHA biogenesis protein MshE (RefSeq) compare
Sama_2563 +0.6 3.1 hypothetical protein (RefSeq) compare
Sama_0453 +0.6 3.3 MSHA biogenesis protein MshK (RefSeq) compare
Sama_1542 +0.6 3.3 response regulator receiver protein (RefSeq) compare
Sama_1367 +0.6 2.7 short chain dehydrogenase/reductase family oxidoreductase (RefSeq) compare
Sama_1032 rumA +0.5 4.3 23S rRNA 5-methyluridine methyltransferase (RefSeq) compare
Sama_1494 +0.5 3.8 phosphate acetyltransferase (RefSeq) compare
Sama_2127 +0.5 2.5 Sua5/YciO/YrdC/YwlC family protein (RefSeq) compare
Sama_0466 +0.5 4.9 MSHA biogenesis protein MshQ (RefSeq) compare
Sama_2041 +0.5 2.3 type IV pilus biogenesis protein pilZ (RefSeq) compare
Sama_1362 +0.5 4.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Sama_1247 +0.5 2.4 primosomal replication protein N'', putative (RefSeq) compare
Sama_2090 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_1662 +0.5 3.2 alpha amylase, catalytic region (RefSeq) compare
Sama_1813 +0.5 2.4 DNA-binding transcriptional regulator HexR (RefSeq) compare
Sama_1868 +0.5 1.5 hypothetical protein (RefSeq) compare
Sama_0372 +0.5 4.1 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) compare
Sama_2778 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_2081 grxA +0.5 2.4 glutaredoxin 1 (RefSeq) compare
Sama_2823 +0.5 3.3 hypothetical protein (RefSeq) compare
Sama_2282 flhF +0.5 2.9 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_1698 +0.5 3.5 hypothetical protein (RefSeq) compare
Sama_0533 +0.5 4.4 alcohol dehydrogenase, zinc-containing (RefSeq) compare
Sama_1771 +0.5 2.6 leucine-responsive transcriptional regulator (RefSeq) compare
Sama_1358 +0.5 2.3 pyruvate carboxyltransferase (RefSeq) compare
Sama_3273 +0.5 1.2 hypothetical protein (RefSeq) compare
Sama_2293 +0.5 2.7 flagellar protein FliJ (RefSeq) compare
Sama_2296 fliG +0.5 1.9 flagellar motor switch protein G (RefSeq) compare
Sama_1110 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_3543 +0.5 4.4 glutathione reductase (RefSeq) compare
Sama_2385 +0.5 1.1 small protein A (RefSeq) compare
Sama_2864 +0.5 1.6 ABC transporter related (RefSeq) compare
Sama_2851 +0.5 4.1 transporter, putative (RefSeq) compare
Sama_2806 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_0462 +0.5 3.0 MSHA pilin protein MshC (RefSeq) compare
Sama_2263 +0.5 1.6 hypothetical protein (RefSeq) compare
Sama_0747 +0.5 4.3 signal transduction histidine kinase-like protein (RefSeq) compare
Sama_2163 +0.5 4.1 M16 family peptidase (RefSeq) compare
Sama_2329 +0.5 3.1 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_0464 +0.5 3.7 MSHA biogenesis protein MshO precursor (RefSeq) compare
Sama_0370 +0.5 3.6 prepilin-type cleavage/methylation (RefSeq) compare
Sama_1822 +0.5 2.1 hypothetical protein (RefSeq) compare
Sama_0452 +0.5 3.3 MSHA biogenesis protein MshJ (RefSeq) compare
Sama_0602 +0.5 3.2 hypothetical protein (RefSeq) compare
Sama_3010 +0.5 3.8 Arginine N-succinyltransferase (EC 2.3.1.109) (from data) compare
Sama_0595 +0.5 3.4 sodium:dicarboxylate symporter (RefSeq) compare
Sama_0938 +0.5 4.1 TonB-dependent receptor (RefSeq) compare
Sama_0046 +0.4 3.5 hypothetical protein (RefSeq) compare
Sama_0121 +0.4 1.9 molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq) compare
Sama_3377 +0.4 3.0 hypothetical protein (RefSeq) compare
Sama_2288 +0.4 2.4 flagellar protein FliO (RefSeq) compare
Sama_0282 +0.4 2.4 putative DNA mismatch endonuclease protein (RefSeq) compare
Sama_0099 +0.4 3.4 TetR family transcriptional regulator (RefSeq) compare
Sama_0658 +0.4 0.9 hypothetical protein (RefSeq) compare
Sama_3316 +0.4 2.1 transcriptional antiterminator, Rof (RefSeq) compare
Sama_1453 +0.4 2.9 transporter, putative (RefSeq) compare
Sama_1756 +0.4 1.2 MarR family transcriptional regulator (RefSeq) compare
Sama_2044 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_0411 +0.4 1.9 hypothetical protein (RefSeq) compare
Sama_1782 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_0970 +0.4 3.1 TatD-related deoxyribonuclease (RefSeq) compare
Sama_2049 metG +0.4 1.5 methionyl-tRNA synthetase (RefSeq) compare
Sama_1560 +0.4 2.1 M24/M37 family peptidase (RefSeq) compare
Sama_2053 aat +0.4 1.8 leucyl/phenylalanyl-tRNA--protein transferase (RefSeq) compare
Sama_3127 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_1361 +0.4 3.4 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Sama_1804 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1987 +0.4 2.2 HAD family hydrolase (RefSeq) compare
Sama_1449 +0.4 2.5 hypothetical protein (RefSeq) compare
Sama_3330 +0.4 1.9 hypothetical protein (RefSeq) compare
Sama_3390 +0.4 2.8 hypothetical protein (RefSeq) compare
Sama_1413 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_3193 +0.4 1.9 peptidyl-tRNA hydrolase domain protein (RefSeq) compare
Sama_2030 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_2284 flhB +0.4 2.2 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_1083 +0.4 2.6 integral membrane domain-containing protein (RefSeq) compare
Sama_1685 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_1817 +0.4 2.7 peptidyl-dipeptidase A (RefSeq) compare
Sama_2429 +0.4 2.1 DNA-binding transcriptional activator GcvA (RefSeq) compare
Sama_2243 +0.4 3.0 phosphoglucosamine mutase (RefSeq) compare
Sama_1672 +0.4 1.6 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_1387 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_3323 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_2926 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_0320 +0.4 1.4 tRNA nucleotidyltransferase (RefSeq) compare
Sama_0141 +0.4 2.9 ferritin (RefSeq) compare
Sama_2283 flhA +0.4 3.1 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_2294 fliI +0.4 2.6 flagellum-specific ATP synthase (RefSeq) compare
Sama_0255 +0.4 3.2 acetylornithine deacetylase (RefSeq) compare
Sama_2885 +0.4 1.5 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source N-Acetyl-D-Glucosamine in Shewanella amazonensis SB2B

For carbon source N-Acetyl-D-Glucosamine across organisms