Experiment set2H33 for Pseudomonas stutzeri RCH2

Compare to:

Cytosine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -6.4 -7.6 Phosphotransferase System HPr (HPr) Family compare
Psest_0153 -5.8 -11.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -5.8 -5.7 Indole-3-glycerol phosphate synthase compare
Psest_3864 -5.5 -12.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3862 -5.5 -15.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3298 -5.4 -9.0 histidinol dehydrogenase compare
Psest_3649 -5.3 -5.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2584 -5.3 -6.3 Phosphoribosylanthranilate isomerase compare
Psest_2591 -5.3 -5.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0508 -5.2 -9.3 gamma-glutamyl phosphate reductase compare
Psest_3648 -5.1 -7.0 anthranilate phosphoribosyltransferase compare
Psest_3384 -5.1 -10.3 glutamate 5-kinase compare
Psest_3866 -5.0 -16.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3818 -4.9 -6.7 endoribonuclease L-PSP, putative compare
Psest_2650 -4.9 -5.8 hypothetical protein compare
Psest_0279 -4.8 -7.4 methionine biosynthesis protein MetW compare
Psest_0155 -4.7 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -4.7 -15.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0952 -4.7 -4.5 Uncharacterized conserved protein compare
Psest_3650 -4.6 -12.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0062 -4.6 -8.3 tryptophan synthase, alpha subunit compare
Psest_3710 -4.6 -12.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2578 -4.5 -16.6 O-succinylhomoserine sulfhydrylase compare
Psest_0325 -4.5 -17.5 Putative threonine efflux protein compare
Psest_0954 -4.5 -11.8 Fe-S oxidoreductase compare
Psest_2579 -4.3 -10.3 amidophosphoribosyltransferase compare
Psest_0687 -4.3 -9.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0326 -4.3 -17.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0152 -4.2 -5.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0280 -4.2 -16.6 homoserine O-acetyltransferase compare
Psest_2590 -4.2 -2.6 3-isopropylmalate dehydratase, small subunit compare
Psest_3711 -4.1 -13.0 Glutamate synthase domain 2 compare
Psest_2589 -4.1 -14.7 3-isopropylmalate dehydrogenase compare
Psest_1474 -4.1 -7.3 phosphoribosylaminoimidazole synthetase compare
Psest_2845 -4.0 -14.3 [Protein-PII] uridylyltransferase compare
Psest_0063 -4.0 -5.5 tryptophan synthase, beta subunit compare
Psest_0953 -4.0 -13.9 iron-sulfur cluster-binding protein compare
Psest_1772 -4.0 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1013 -3.9 -4.6 phosphoribosylamine--glycine ligase compare
Psest_3931 -3.8 -6.5 Signal transduction histidine kinase, nitrogen specific compare
Psest_1452 -3.8 -12.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3944 -3.7 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0489 -3.6 -4.9 phosphoserine phosphatase SerB compare
Psest_0774 -3.4 -13.2 cytosine permease (from data) conserved
Psest_0773 -3.4 -6.2 Cytosine deaminase and related metal-dependent hydrolases conserved
Psest_0313 -3.3 -5.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3932 -3.3 -6.6 nitrogen regulation protein NR(I) compare
Psest_3129 -3.1 -3.5 tyrosine recombinase XerD compare
Psest_3159 -3.0 -10.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1295 -2.9 -11.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2088 -2.8 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3943 -2.8 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1496 -2.8 -3.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_2329 -2.6 -18.0 Transcriptional regulator compare
Psest_0170 -2.5 -8.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_3297 -2.5 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1640 -2.5 -14.8 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1242 -2.5 -3.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3496 -2.5 -2.3 Predicted metal-binding protein compare
Psest_0411 -2.4 -11.5 biotin synthetase compare
Psest_2714 -2.4 -3.5 7-cyano-7-deazaguanine reductase compare
Psest_3338 -2.3 -3.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3998 -2.2 -5.1 glutamate--cysteine ligase compare
Psest_3377 -2.1 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1473 -2.1 -9.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3178 -2.1 -6.2 formyltetrahydrofolate deformylase compare
Psest_0737 -2.1 -1.3 Cu(I)-responsive transcriptional regulator compare
Psest_0498 -2.1 -3.3 ribosome small subunit-dependent GTPase A compare
Psest_3766 -2.0 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2104 -1.8 -3.3 IscR-regulated protein YhgI compare
Psest_3226 -1.8 -1.9 Predicted membrane protein compare
Psest_1037 -1.8 -2.7 acetolactate synthase, small subunit compare
Psest_4303 -1.8 -1.4 HEAT repeat. compare
Psest_3771 -1.7 -12.0 probable ammonium transporter, marine subtype compare
Psest_0691 -1.7 -11.1 ribonuclease R compare
Psest_3339 -1.7 -5.7 Signal transduction histidine kinase compare
Psest_0951 -1.6 -9.7 FAD/FMN-containing dehydrogenases compare
Psest_0722 -1.6 -8.6 Predicted ATPase compare
Psest_4191 -1.5 -3.3 Transcriptional regulator compare
Psest_0558 -1.5 -1.4 urease, beta subunit compare
Psest_1506 -1.5 -6.3 queuosine biosynthesis protein QueC compare
Psest_2864 -1.5 -5.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3092 -1.5 -1.6 ribonuclease III, bacterial compare
Psest_3456 -1.5 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_1837 -1.4 -7.8 Endoglucanase compare
Psest_2316 -1.4 -9.0 phosphoenolpyruvate synthase compare
Psest_0309 -1.3 -1.5 RND family efflux transporter, MFP subunit compare
Psest_2945 -1.3 -2.4 septum site-determining protein MinC compare
Psest_2645 -1.3 -6.0 Transcriptional regulator compare
Psest_1486 -1.3 -3.1 hypothetical protein compare
Psest_2285 -1.3 -3.8 ATP-dependent protease La compare
Psest_3012 -1.3 -3.1 cob(II)yrinic acid a,c-diamide reductase compare
Psest_0398 -1.3 -5.2 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_3322 -1.3 -10.7 TIGR02099 family protein compare
Psest_2872 -1.3 -2.8 protein RecA compare
Psest_0306 -1.3 -9.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1814 -1.2 -9.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3550 -1.2 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0955 -1.2 -4.5 D,L-lactate:H+ symporter (from data) compare
Psest_1505 -1.2 -2.6 Organic radical activating enzymes compare
Psest_1424 -1.2 -2.1 Lipoate-protein ligase A compare
Psest_2324 -1.2 -9.2 hypothetical protein compare
Psest_3304 -1.2 -5.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1527 -1.2 -9.3 Na+/proline symporter compare
Psest_3697 -1.2 -1.5 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3113 -1.2 -3.5 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1920 -1.2 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.1 -3.4 septum site-determining protein MinD compare
Psest_2413 -1.1 -2.5 Periplasmic protein TonB, links inner and outer membranes compare
Psest_0103 -1.1 -2.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1292 -1.1 -6.2 monothiol glutaredoxin, Grx4 family compare
Psest_2405 -1.1 -1.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3458 -1.1 -1.2 hypothetical protein compare
Psest_2613 -1.1 -2.4 hypothetical protein compare
Psest_0415 -1.1 -3.9 dethiobiotin synthase compare
Psest_3721 -1.1 -5.2 Malic enzyme compare
Psest_2325 -1.1 -6.8 alpha-L-glutamate ligase-related protein compare
Psest_4084 -1.1 -8.2 oxaloacetate decarboxylase alpha subunit compare
Psest_1815 -1.1 -8.7 pseudaminic acid synthase compare
Psest_2648 -1.1 -2.9 hypothetical protein compare
Psest_4085 -1.1 -8.0 Biotin carboxylase compare
Psest_4201 -1.0 -1.9 general secretion pathway protein F compare
Psest_1075 -1.0 -3.7 Predicted transcriptional regulators compare
Psest_3177 -1.0 -2.6 hypothetical protein compare
Psest_1704 -1.0 -1.6 Dehydrogenases (flavoproteins) compare
Psest_0413 -1.0 -3.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0412 -1.0 -6.9 8-amino-7-oxononanoate synthase compare
Psest_1070 -1.0 -2.4 Predicted membrane protein compare
Psest_3895 -1.0 -2.4 hypothetical protein compare
Psest_3960 -1.0 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3908 -1.0 -1.1 Cytochrome c553 compare
Psest_1417 -1.0 -1.4 hypothetical protein compare
Psest_3305 -1.0 -5.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0368 -1.0 -1.8 Transcriptional regulator compare
Psest_0684 -1.0 -3.9 GTP-binding protein HflX compare
Psest_4363 -1.0 -5.4 ATPases involved in chromosome partitioning compare
Psest_1306 -1.0 -2.1 hypothetical protein compare
Psest_2158 -1.0 -7.7 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0175 -1.0 -4.7 Xaa-Pro aminopeptidase compare
Psest_1679 -1.0 -2.1 ribonuclease, Rne/Rng family compare
Psest_2531 -1.0 -7.8 cytochrome c oxidase accessory protein FixG compare
Psest_0094 -0.9 -1.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0225 -0.9 -1.6 Predicted permease, DMT superfamily compare
Psest_0212 -0.9 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_2218 -0.9 -2.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_0414 -0.9 -3.2 biotin biosynthesis protein BioC compare
Psest_2624 -0.9 -2.1 hypothetical protein compare
Psest_2668 -0.9 -3.0 Lactoylglutathione lyase and related lyases compare
Psest_2027 -0.9 -6.8 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3843 -0.9 -4.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0260 -0.9 -1.4 Cell division protein compare
Psest_0161 -0.9 -2.2 Membrane-bound metallopeptidase compare
Psest_0097 -0.9 -1.2 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1622 -0.9 -3.1 hypothetical protein compare
Psest_0532 -0.9 -4.0 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_2358 -0.9 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2646 -0.9 -3.1 SOS regulatory protein LexA compare
Psest_2323 -0.9 -5.9 Uncharacterized protein conserved in archaea compare
Psest_4393 -0.9 -4.0 Capsule polysaccharide export protein compare
Psest_2892 -0.9 -2.3 Transcriptional regulator compare
Psest_0958 -0.8 -5.2 Oligoketide cyclase/lipid transport protein compare
Psest_3903 -0.8 -3.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0814 -0.8 -2.4 MoxR-like ATPases compare
Psest_4044 -0.8 -4.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2719 -0.8 -3.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4086 -0.8 -5.4 Transcriptional regulator compare
Psest_2454 -0.8 -2.3 Rhodanese-related sulfurtransferase compare
Psest_1492 -0.8 -5.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3449 -0.8 -1.4 DJ-1 family protein compare
Psest_1284 -0.8 -3.1 exodeoxyribonuclease VII, large subunit compare
Psest_2333 -0.8 -1.1 Protein of unknown function (DUF3359). compare
Psest_1282 -0.8 -1.7 Amidases related to nicotinamidase compare
Psest_0409 -0.8 -2.1 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0831 -0.8 -1.1 hypothetical protein compare
Psest_3494 -0.8 -1.5 hypothetical protein compare
Psest_2090 -0.8 -2.3 Protein of unknown function (DUF2970). compare
Psest_2809 -0.8 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0281 -0.8 -4.9 Dynamin family. compare
Psest_0359 -0.8 -1.8 Transcriptional regulators compare
Psest_3112 -0.8 -3.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1241 -0.8 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2621 -0.8 -2.4 TadE-like protein. compare
Psest_0277 -0.8 -1.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0119 -0.8 -1.0 hypothetical protein compare
Psest_2988 -0.7 -3.9 aspartate kinase, monofunctional class compare
Psest_0226 -0.7 -1.9 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_1919 -0.7 -1.4 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3664 -0.7 -1.7 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2153 -0.7 -2.1 formate dehydrogenase, gamma subunit compare
Psest_1750 -0.7 -1.9 Protein of unknown function (DUF2802). compare
Psest_2143 -0.7 -3.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0207 -0.7 -1.6 hypothetical protein compare
Psest_0719 -0.7 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3699 -0.7 -2.6 Dehydrogenases (flavoproteins) compare
Psest_3480 -0.7 -1.2 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3831 -0.7 -3.7 Transcriptional regulator compare
Psest_0327 -0.7 -2.9 Transcriptional regulator compare
Psest_1813 -0.7 -5.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0570 -0.7 -2.8 hypothetical protein compare
Psest_3790 -0.7 -4.2 Cytochrome c5 compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Cytosine in Pseudomonas stutzeri RCH2

For nitrogen source Cytosine across organisms