Experiment set2H32 for Pseudomonas stutzeri RCH2

Compare to:

Adenine hydrochloride hydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -6.1 -7.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2591 -5.9 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0508 -5.8 -6.9 gamma-glutamyl phosphate reductase compare
Psest_3647 -5.7 -6.8 Indole-3-glycerol phosphate synthase compare
Psest_3384 -5.7 -6.8 glutamate 5-kinase compare
Psest_0153 -5.6 -13.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -5.5 -6.5 anthranilate phosphoribosyltransferase compare
Psest_3862 -5.5 -16.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0155 -5.5 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2590 -5.4 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psest_2088 -5.4 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_1199 -5.3 -6.3 OHCU decarboxylase conserved
Psest_2578 -5.3 -14.8 O-succinylhomoserine sulfhydrylase compare
Psest_3650 -5.2 -8.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3649 -5.2 -7.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0279 -5.2 -7.1 methionine biosynthesis protein MetW compare
Psest_0062 -5.2 -7.1 tryptophan synthase, alpha subunit compare
Psest_3864 -5.2 -14.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0954 -5.1 -9.8 Fe-S oxidoreductase compare
Psest_3298 -5.1 -10.4 histidinol dehydrogenase compare
Psest_0325 -5.1 -18.2 Putative threonine efflux protein compare
Psest_3866 -5.1 -17.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0152 -5.1 -6.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_2650 -4.9 -4.7 hypothetical protein compare
Psest_3818 -4.9 -8.8 endoribonuclease L-PSP, putative compare
Psest_3710 -4.9 -10.4 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1496 -4.8 -3.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_2589 -4.8 -13.7 3-isopropylmalate dehydrogenase compare
Psest_3178 -4.7 -6.4 formyltetrahydrofolate deformylase compare
Psest_0280 -4.7 -16.5 homoserine O-acetyltransferase compare
Psest_2584 -4.6 -8.3 Phosphoribosylanthranilate isomerase compare
Psest_0952 -4.6 -4.4 Uncharacterized conserved protein compare
Psest_3299 -4.6 -14.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3944 -4.6 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0953 -4.5 -11.8 iron-sulfur cluster-binding protein compare
Psest_1201 -4.4 -8.4 hydroxyisourate hydrolase conserved
Psest_0326 -4.4 -13.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0489 -4.3 -3.0 phosphoserine phosphatase SerB compare
Psest_3711 -4.3 -11.7 Glutamate synthase domain 2 compare
Psest_1037 -4.2 -4.8 acetolactate synthase, small subunit compare
Psest_0687 -4.2 -10.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1200 -4.2 -6.4 putative urate catabolism protein conserved
Psest_2845 -4.1 -13.8 [Protein-PII] uridylyltransferase compare
Psest_3810 -4.1 -2.8 orotate phosphoribosyltransferase compare
Psest_2316 -4.1 -18.8 phosphoenolpyruvate synthase compare
Psest_1295 -4.0 -10.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3932 -4.0 -4.7 nitrogen regulation protein NR(I) compare
Psest_3931 -4.0 -6.6 Signal transduction histidine kinase, nitrogen specific compare
Psest_0063 -3.9 -7.0 tryptophan synthase, beta subunit compare
Psest_3123 -3.7 -5.6 dihydroorotase, homodimeric type compare
Psest_0313 -3.6 -4.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3226 -3.5 -2.1 Predicted membrane protein compare
Psest_1772 -3.3 -8.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1947 -3.3 -2.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0411 -3.3 -13.0 biotin synthetase compare
Psest_0398 -3.2 -7.2 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2329 -3.1 -17.9 Transcriptional regulator compare
Psest_2327 -3.0 -8.8 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3297 -2.9 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0414 -2.8 -6.2 biotin biosynthesis protein BioC compare
Psest_3092 -2.8 -3.7 ribonuclease III, bacterial compare
Psest_0415 -2.7 -6.3 dethiobiotin synthase compare
Psest_0193 -2.6 -1.6 conserved hypothetical protein compare
Psest_2104 -2.6 -4.1 IscR-regulated protein YhgI compare
Psest_1686 -2.5 -5.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2988 -2.5 -10.3 aspartate kinase, monofunctional class compare
Psest_0498 -2.5 -2.4 ribosome small subunit-dependent GTPase A compare
Psest_0298 -2.5 -7.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0327 -2.4 -3.9 Transcriptional regulator compare
Psest_0306 -2.4 -15.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1815 -2.3 -15.0 pseudaminic acid synthase compare
Psest_0412 -2.2 -12.0 8-amino-7-oxononanoate synthase compare
Psest_0413 -2.2 -8.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3998 -2.2 -5.6 glutamate--cysteine ligase compare
Psest_0170 -2.1 -7.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_0722 -2.1 -10.8 Predicted ATPase compare
Psest_0951 -2.1 -10.9 FAD/FMN-containing dehydrogenases compare
Psest_4086 -2.0 -11.0 Transcriptional regulator compare
Psest_1640 -2.0 -13.3 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2714 -2.0 -3.3 7-cyano-7-deazaguanine reductase compare
Psest_2719 -1.9 -7.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4085 -1.9 -13.0 Biotin carboxylase compare
Psest_0955 -1.9 -5.1 D,L-lactate:H+ symporter (from data) compare
Psest_4084 -1.9 -13.3 oxaloacetate decarboxylase alpha subunit compare
Psest_1488 -1.8 -14.7 outer membrane porin, OprD family. compare
Psest_1292 -1.8 -8.7 monothiol glutaredoxin, Grx4 family compare
Psest_2333 -1.8 -1.8 Protein of unknown function (DUF3359). compare
Psest_2079 -1.8 -13.3 Predicted permeases compare
Psest_3943 -1.8 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1197 -1.8 -6.7 Ureidoglycolate hydrolase conserved
Psest_0719 -1.8 -5.8 Uncharacterized protein conserved in bacteria compare
Psest_0209 -1.7 -1.7 membrane protein AbrB duplication compare
Psest_0212 -1.7 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_2090 -1.7 -4.9 Protein of unknown function (DUF2970). compare
Psest_1505 -1.6 -2.2 Organic radical activating enzymes compare
Psest_2324 -1.6 -12.7 hypothetical protein compare
Psest_1509 -1.6 -9.2 quinolinate synthetase complex, A subunit compare
Psest_1031 -1.6 -8.8 Uncharacterized protein conserved in bacteria compare
Psest_1492 -1.6 -10.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0673 -1.6 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_4191 -1.6 -3.5 Transcriptional regulator compare
Psest_3960 -1.6 -2.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2325 -1.5 -7.9 alpha-L-glutamate ligase-related protein compare
Psest_1837 -1.5 -8.8 Endoglucanase compare
Psest_1812 -1.5 -6.8 pseudaminic acid CMP-transferase compare
Psest_2323 -1.4 -9.6 Uncharacterized protein conserved in archaea compare
Psest_1452 -1.4 -9.2 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0175 -1.4 -7.1 Xaa-Pro aminopeptidase compare
Psest_3146 -1.4 -2.8 hypothetical protein compare
Psest_0708 -1.4 -2.6 outer membrane assembly lipoprotein YfiO compare
Psest_1679 -1.4 -2.7 ribonuclease, Rne/Rng family compare
Psest_0542 -1.4 -6.4 AMP nucleosidase compare
Psest_1179 -1.4 -2.2 2-hydroxy-3-oxopropionate reductase compare
Psest_0718 -1.3 -4.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_0548 -1.3 -6.3 Urease accessory protein UreE conserved
Psest_3767 -1.3 -4.2 tyrosine recombinase XerC compare
Psest_3449 -1.3 -1.8 DJ-1 family protein compare
Psest_3129 -1.3 -2.3 tyrosine recombinase XerD compare
Psest_0547 -1.3 -3.4 Urease accessory protein UreF compare
Psest_2863 -1.3 -5.8 Transcriptional regulator compare
Psest_0297 -1.3 -4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3721 -1.3 -7.1 Malic enzyme compare
Psest_3550 -1.3 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2067 -1.3 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2862 -1.3 -7.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0537 -1.2 -2.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0442 -1.2 -6.1 ATPases of the AAA+ class compare
Psest_1813 -1.2 -7.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1242 -1.2 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0277 -1.2 -2.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0557 -1.1 -6.6 Urease (EC 3.5.1.5) (from data) conserved
Psest_1196 -1.1 -7.4 Predicted membrane protein conserved
Psest_4287 -1.1 -5.7 Predicted glutamine amidotransferases compare
Psest_2645 -1.1 -5.3 Transcriptional regulator compare
Psest_1506 -1.1 -4.2 queuosine biosynthesis protein QueC compare
Psest_2643 -1.1 -2.5 Beta-glucosidase-related glycosidases compare
Psest_2945 -1.1 -1.5 septum site-determining protein MinC compare
Psest_3720 -1.1 -8.7 penicillin-binding protein, 1A family compare
Psest_3494 -1.1 -2.0 hypothetical protein compare
Psest_2317 -1.1 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_3766 -1.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1704 -1.1 -1.8 Dehydrogenases (flavoproteins) compare
Psest_4280 -1.1 -2.7 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0397 -1.1 -6.7 Small-conductance mechanosensitive channel compare
Psest_2530 -1.1 -4.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2946 -1.1 -3.2 septum site-determining protein MinD compare
Psest_0097 -1.1 -1.4 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0545 -1.1 -6.1 urease accessory protein UreG conserved
Psest_1277 -1.1 -7.0 2-isopropylmalate synthase, yeast type compare
Psest_3395 -1.0 -1.9 hypothetical protein compare
Psest_2810 -1.0 -3.8 5'/3'-nucleotidase SurE compare
Psest_0546 -1.0 -4.1 hypothetical protein compare
Psest_3762 -1.0 -2.9 iron donor protein CyaY compare
Psest_3301 -1.0 -2.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_1111 -1.0 -2.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2872 -1.0 -2.3 protein RecA compare
Psest_2680 -1.0 -3.6 transcriptional regulator, BolA protein family compare
Psest_1664 -1.0 -6.1 Glycerophosphoryl diester phosphodiesterase compare
Psest_2027 -1.0 -7.9 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3535 -1.0 -2.1 hypothetical protein compare
Psest_0561 -1.0 -4.9 Urease accessory protein UreH conserved
Psest_2531 -1.0 -7.5 cytochrome c oxidase accessory protein FixG compare
Psest_1870 -1.0 -1.2 Transcriptional regulators compare
Psest_2809 -1.0 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2331 -1.0 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0560 -1.0 -5.8 Urease (EC 3.5.1.5) (from data) compare
Psest_4142 -0.9 -0.9 hypothetical protein compare
Psest_2527 -0.9 -5.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4151 -0.9 -2.5 Flagellar hook capping protein compare
Psest_3012 -0.9 -2.2 cob(II)yrinic acid a,c-diamide reductase compare
Psest_2983 -0.9 -2.1 hypothetical protein compare
Psest_2613 -0.9 -2.0 hypothetical protein compare
Psest_1058 -0.9 -2.0 ribosomal-protein-alanine acetyltransferase compare
Psest_0378 -0.9 -1.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_4281 -0.9 -6.3 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_0187 -0.9 -2.6 Metal-dependent hydrolase compare
Psest_0359 -0.9 -2.1 Transcriptional regulators compare
Psest_3322 -0.9 -7.5 TIGR02099 family protein compare
Psest_2218 -0.9 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_2442 -0.9 -2.3 hypothetical protein compare
Psest_2285 -0.9 -2.4 ATP-dependent protease La compare
Psest_4209 -0.8 -2.1 Uncharacterized conserved small protein compare
Psest_4393 -0.8 -3.9 Capsule polysaccharide export protein compare
Psest_0660 -0.8 -2.0 Methyl-accepting chemotaxis protein compare
Psest_0678 -0.8 -2.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_4396 -0.8 -4.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3961 -0.8 -3.3 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_3303 -0.8 -3.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1326 -0.8 -1.8 Uncharacterized conserved protein compare
Psest_0959 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4070 -0.8 -5.0 PAS domain S-box compare
Psest_2037 -0.7 -3.2 uroporphyrin-III C-methyltransferase compare
Psest_3338 -0.7 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3117 -0.7 -2.7 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1120 -0.7 -2.9 uracil phosphoribosyltransferase compare
Psest_1814 -0.7 -5.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1486 -0.7 -1.4 hypothetical protein compare
Psest_2158 -0.7 -5.7 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_1115 -0.7 -1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0257 -0.7 -1.7 Predicted Zn-dependent peptidases compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas stutzeri RCH2

For nitrogen source Adenine hydrochloride hydrate across organisms