Experiment set2H31 for Pseudomonas stutzeri RCH2

Compare to:

Parabanic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -5.9 -8.0 Phosphotransferase System HPr (HPr) Family compare
Psest_0152 -5.2 -9.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_0155 -5.1 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0952 -5.0 -3.5 Uncharacterized conserved protein compare
Psest_2584 -4.9 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_3647 -4.8 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_0153 -4.7 -15.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3384 -4.7 -10.4 glutamate 5-kinase compare
Psest_0508 -4.7 -10.7 gamma-glutamyl phosphate reductase compare
Psest_3298 -4.5 -12.7 histidinol dehydrogenase compare
Psest_3862 -4.4 -17.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0560 -4.4 -13.1 Urease (EC 3.5.1.5) (from data) conserved
Psest_3931 -4.4 -6.6 Signal transduction histidine kinase, nitrogen specific compare
Psest_3864 -4.3 -17.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3650 -4.3 -14.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2591 -4.3 -5.0 3-isopropylmalate dehydratase, large subunit compare
Psest_0558 -4.3 -1.5 urease, beta subunit compare
Psest_3299 -4.2 -15.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -4.1 -20.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3649 -4.0 -10.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3932 -4.0 -4.7 nitrogen regulation protein NR(I) compare
Psest_0547 -3.9 -5.6 Urease accessory protein UreF compare
Psest_0062 -3.9 -11.4 tryptophan synthase, alpha subunit compare
Psest_2579 -3.8 -10.6 amidophosphoribosyltransferase compare
Psest_1037 -3.8 -5.7 acetolactate synthase, small subunit compare
Psest_0954 -3.7 -11.8 Fe-S oxidoreductase compare
Psest_2589 -3.7 -12.3 3-isopropylmalate dehydrogenase compare
Psest_3648 -3.7 -10.4 anthranilate phosphoribosyltransferase compare
Psest_3710 -3.7 -16.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1474 -3.7 -8.5 phosphoribosylaminoimidazole synthetase compare
Psest_0313 -3.7 -4.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -3.6 -11.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3960 -3.6 -2.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0280 -3.6 -13.2 homoserine O-acetyltransferase compare
Psest_2845 -3.6 -13.9 [Protein-PII] uridylyltransferase compare
Psest_3711 -3.6 -16.7 Glutamate synthase domain 2 compare
Psest_2578 -3.5 -13.9 O-succinylhomoserine sulfhydrylase compare
Psest_2088 -3.4 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1013 -3.4 -5.1 phosphoribosylamine--glycine ligase compare
Psest_1679 -3.4 -2.6 ribonuclease, Rne/Rng family compare
Psest_2590 -3.3 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_1772 -3.3 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0953 -3.3 -12.1 iron-sulfur cluster-binding protein compare
Psest_0489 -3.3 -4.9 phosphoserine phosphatase SerB compare
Psest_0548 -3.2 -9.3 Urease accessory protein UreE conserved
Psest_0557 -3.1 -10.7 Urease (EC 3.5.1.5) (from data) conserved
Psest_0326 -3.0 -14.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0561 -3.0 -11.9 Urease accessory protein UreH conserved
Psest_3123 -3.0 -6.2 dihydroorotase, homodimeric type compare
Psest_0063 -3.0 -9.4 tryptophan synthase, beta subunit compare
Psest_1452 -3.0 -12.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0545 -2.8 -9.5 urease accessory protein UreG conserved
Psest_0279 -2.8 -6.1 methionine biosynthesis protein MetW compare
Psest_0170 -2.7 -9.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_3159 -2.7 -7.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3092 -2.7 -2.6 ribonuclease III, bacterial compare
Psest_3818 -2.6 -7.6 endoribonuclease L-PSP, putative compare
Psest_0325 -2.6 -14.2 Putative threonine efflux protein compare
Psest_2872 -2.5 -3.2 protein RecA compare
Psest_1488 -2.4 -16.6 outer membrane porin, OprD family. compare
Psest_3178 -2.4 -3.3 formyltetrahydrofolate deformylase compare
Psest_2329 -2.3 -13.5 Transcriptional regulator compare
Psest_3476 -2.3 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0411 -2.3 -9.3 biotin synthetase compare
Psest_0565 -2.2 -7.8 urea ABC transporter, permease protein UrtC conserved
Psest_3810 -2.2 -3.0 orotate phosphoribosyltransferase compare
Psest_2650 -2.1 -3.7 hypothetical protein compare
Psest_2714 -2.1 -3.1 7-cyano-7-deazaguanine reductase compare
Psest_0498 -2.1 -2.9 ribosome small subunit-dependent GTPase A compare
Psest_1295 -2.1 -9.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3998 -2.1 -5.7 glutamate--cysteine ligase compare
Psest_0218 -2.1 -3.6 Acyl-CoA hydrolase compare
Psest_4085 -2.0 -13.1 Biotin carboxylase compare
Psest_1242 -2.0 -3.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4086 -2.0 -10.8 Transcriptional regulator compare
Psest_1947 -2.0 -3.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3129 -2.0 -2.0 tyrosine recombinase XerD compare
Psest_1473 -2.0 -7.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0691 -2.0 -11.4 ribonuclease R compare
Psest_3297 -1.9 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1506 -1.9 -6.0 queuosine biosynthesis protein QueC compare
Psest_3944 -1.9 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0398 -1.9 -6.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_4084 -1.9 -11.2 oxaloacetate decarboxylase alpha subunit compare
Psest_0563 -1.9 -3.9 urea ABC transporter, ATP-binding protein UrtE compare
Psest_0097 -1.8 -2.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0306 -1.8 -10.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4243 -1.8 -2.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2953 -1.8 -3.3 Histone acetyltransferase compare
Psest_0212 -1.7 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_0537 -1.7 -1.6 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1505 -1.7 -3.1 Organic radical activating enzymes compare
Psest_1496 -1.7 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0415 -1.7 -4.6 dethiobiotin synthase compare
Psest_0719 -1.7 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_0413 -1.7 -5.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3494 -1.6 -2.3 hypothetical protein compare
Psest_0546 -1.6 -3.8 hypothetical protein compare
Psest_3850 -1.6 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0566 -1.6 -8.3 urea ABC transporter, permease component (from data) conserved
Psest_1492 -1.6 -8.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1815 -1.6 -9.8 pseudaminic acid synthase compare
Psest_1631 -1.6 -2.1 Uncharacterized conserved small protein compare
Psest_0951 -1.6 -7.3 FAD/FMN-containing dehydrogenases compare
Psest_0412 -1.6 -7.7 8-amino-7-oxononanoate synthase compare
Psest_1463 -1.6 -1.4 SufE protein probably involved in Fe-S center assembly compare
Psest_0955 -1.6 -4.8 D,L-lactate:H+ symporter (from data) compare
Psest_2333 -1.5 -1.4 Protein of unknown function (DUF3359). compare
Psest_2316 -1.5 -8.7 phosphoenolpyruvate synthase compare
Psest_0567 -1.5 -8.5 urea ABC transporter, urea binding protein conserved
Psest_1241 -1.5 -6.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3339 -1.5 -5.3 Signal transduction histidine kinase compare
Psest_1999 -1.5 -1.3 pseudouridine synthase compare
Psest_4396 -1.5 -8.6 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2325 -1.5 -6.1 alpha-L-glutamate ligase-related protein compare
Psest_3573 -1.5 -3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_2090 -1.5 -4.5 Protein of unknown function (DUF2970). compare
Psest_3338 -1.4 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0662 -1.4 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0414 -1.4 -3.9 biotin biosynthesis protein BioC compare
Psest_2581 -1.4 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4364 -1.3 -4.3 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_3013 -1.3 -2.0 cobyrinic acid a,c-diamide synthase compare
Psest_1812 -1.3 -6.7 pseudaminic acid CMP-transferase compare
Psest_2719 -1.3 -3.5 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1640 -1.2 -8.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3226 -1.2 -1.2 Predicted membrane protein compare
Psest_2810 -1.2 -3.4 5'/3'-nucleotidase SurE compare
Psest_1814 -1.2 -8.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4363 -1.2 -5.7 ATPases involved in chromosome partitioning compare
Psest_0575 -1.2 -0.8 HrpA-like helicases compare
Psest_1837 -1.1 -5.8 Endoglucanase compare
Psest_2079 -1.1 -8.2 Predicted permeases compare
Psest_0119 -1.1 -2.0 hypothetical protein compare
Psest_1509 -1.1 -6.4 quinolinate synthetase complex, A subunit compare
Psest_2324 -1.1 -8.6 hypothetical protein compare
Psest_3721 -1.1 -4.7 Malic enzyme compare
Psest_3766 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.1 -3.2 septum site-determining protein MinD compare
Psest_0136 -1.1 -7.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4044 -1.1 -5.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1762 -1.1 -2.8 cytochrome c-type biogenesis protein CcmI compare
Psest_4191 -1.1 -2.3 Transcriptional regulator compare
Psest_4303 -1.1 -1.0 HEAT repeat. compare
Psest_2331 -1.1 -5.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2027 -1.1 -7.3 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0998 -1.1 -2.0 poly(A) polymerase compare
Psest_3767 -1.0 -4.1 tyrosine recombinase XerC compare
Psest_4371 -1.0 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3954 -1.0 -1.2 Small protein A (tmRNA-binding) compare
Psest_0281 -1.0 -4.9 Dynamin family. compare
Psest_0094 -1.0 -1.9 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2104 -1.0 -2.1 IscR-regulated protein YhgI compare
Psest_3943 -1.0 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2323 -1.0 -6.2 Uncharacterized protein conserved in archaea compare
Psest_3895 -1.0 -2.3 hypothetical protein compare
Psest_1643 -0.9 -1.3 hypothetical protein compare
Psest_3531 -0.9 -1.2 Peptidase propeptide and YPEB domain. compare
Psest_0559 -0.9 -4.1 Sortase and related acyltransferases compare
Psest_0138 -0.9 -5.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3212 -0.9 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1306 -0.9 -1.3 hypothetical protein compare
Psest_3084 -0.9 -2.0 methyltransferase, putative compare
Psest_0189 -0.9 -3.4 Negative regulator of beta-lactamase expression compare
Psest_3012 -0.9 -2.1 cob(II)yrinic acid a,c-diamide reductase compare
Psest_2907 -0.9 -1.4 Protein of unknown function (DUF3618). compare
Psest_3626 -0.9 -3.7 hypothetical protein compare
Psest_0137 -0.9 -4.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1813 -0.9 -6.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1486 -0.9 -2.8 hypothetical protein compare
Psest_4297 -0.9 -4.9 PAS domain S-box compare
Psest_0057 -0.9 -2.9 Predicted transcriptional regulators compare
Psest_2343 -0.9 -2.7 Mg-dependent DNase compare
Psest_2067 -0.9 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1292 -0.8 -4.4 monothiol glutaredoxin, Grx4 family compare
Psest_4391 -0.8 -6.4 ATPases involved in chromosome partitioning compare
Psest_3146 -0.8 -1.8 hypothetical protein compare
Psest_0722 -0.8 -4.3 Predicted ATPase compare
Psest_1008 -0.8 -1.1 hypothetical protein compare
Psest_2580 -0.8 -2.7 Uncharacterized membrane protein, required for colicin V production compare
Psest_0207 -0.8 -1.8 hypothetical protein compare
Psest_0294 -0.8 -2.2 Putative transcriptional regulator compare
Psest_3453 -0.8 -2.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0673 -0.8 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2334 -0.8 -6.1 Uncharacterized protein conserved in bacteria compare
Psest_0292 -0.8 -2.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2945 -0.8 -1.0 septum site-determining protein MinC compare
Psest_3872 -0.8 -4.6 FAD/FMN-containing dehydrogenases compare
Psest_3048 -0.8 -1.8 hypothetical protein compare
Psest_0392 -0.8 -5.2 Signal transduction histidine kinase compare
Psest_2276 -0.8 -3.2 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_0193 -0.8 -0.8 conserved hypothetical protein compare
Psest_1318 -0.8 -2.0 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_3575 -0.8 -3.3 Arabinose efflux permease compare
Psest_2862 -0.8 -4.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2712 -0.8 -3.4 Surface lipoprotein compare
Psest_2101 -0.8 -1.3 hypothetical protein compare
Psest_0759 -0.8 -0.6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2809 -0.8 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2680 -0.8 -4.4 transcriptional regulator, BolA protein family compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Parabanic Acid in Pseudomonas stutzeri RCH2

For nitrogen source Parabanic Acid across organisms