Experiment set2H30 for Pseudomonas stutzeri RCH2

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -6.8 -6.6 Phosphotransferase System HPr (HPr) Family compare
Psest_3648 -5.9 -4.1 anthranilate phosphoribosyltransferase compare
Psest_2591 -5.9 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0155 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0153 -5.8 -11.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3862 -5.6 -17.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3647 -5.5 -7.6 Indole-3-glycerol phosphate synthase compare
Psest_2584 -5.4 -5.3 Phosphoribosylanthranilate isomerase compare
Psest_0325 -5.3 -18.1 Putative threonine efflux protein compare
Psest_3864 -5.2 -15.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4287 -5.1 -10.0 Predicted glutamine amidotransferases compare
Psest_0508 -5.0 -10.1 gamma-glutamyl phosphate reductase compare
Psest_3649 -5.0 -7.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3650 -4.9 -11.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2578 -4.8 -15.4 O-succinylhomoserine sulfhydrylase compare
Psest_4280 -4.8 -5.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_3298 -4.7 -12.6 histidinol dehydrogenase compare
Psest_4282 -4.7 -12.0 spermidine/putrescine ABC transporter ATP-binding subunit conserved
Psest_0952 -4.6 -4.4 Uncharacterized conserved protein compare
Psest_0152 -4.6 -5.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0687 -4.6 -9.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0062 -4.6 -11.0 tryptophan synthase, alpha subunit compare
Psest_3299 -4.6 -14.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0279 -4.5 -8.1 methionine biosynthesis protein MetW compare
Psest_4281 -4.4 -18.8 ABC-type spermidine/putrescine transport system, permease component I conserved
Psest_0280 -4.4 -16.9 homoserine O-acetyltransferase compare
Psest_2579 -4.4 -9.7 amidophosphoribosyltransferase compare
Psest_0489 -4.4 -3.0 phosphoserine phosphatase SerB compare
Psest_2589 -4.3 -15.4 3-isopropylmalate dehydrogenase compare
Psest_3866 -4.3 -19.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3711 -4.2 -13.4 Glutamate synthase domain 2 compare
Psest_1474 -4.1 -8.2 phosphoribosylaminoimidazole synthetase compare
Psest_0063 -4.1 -6.2 tryptophan synthase, beta subunit compare
Psest_3710 -4.0 -15.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3384 -3.9 -11.4 glutamate 5-kinase compare
Psest_3931 -3.8 -6.8 Signal transduction histidine kinase, nitrogen specific compare
Psest_1013 -3.8 -5.1 phosphoribosylamine--glycine ligase compare
Psest_0313 -3.6 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2590 -3.4 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psest_4284 -3.4 -15.4 Spermidine/putrescine-binding periplasmic protein conserved
Psest_0954 -3.3 -7.7 Fe-S oxidoreductase compare
Psest_3932 -3.2 -6.5 nitrogen regulation protein NR(I) compare
Psest_4288 -3.2 -14.8 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) conserved
Psest_0953 -3.2 -11.8 iron-sulfur cluster-binding protein compare
Psest_0326 -3.2 -10.1 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3159 -3.1 -11.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1452 -3.1 -13.5 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2714 -3.0 -3.6 7-cyano-7-deazaguanine reductase compare
Psest_1947 -3.0 -3.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3810 -2.9 -4.2 orotate phosphoribosyltransferase compare
Psest_3123 -2.8 -5.8 dihydroorotase, homodimeric type compare
Psest_2088 -2.7 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3129 -2.7 -2.9 tyrosine recombinase XerD compare
Psest_3178 -2.4 -5.7 formyltetrahydrofolate deformylase compare
Psest_1295 -2.3 -10.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3338 -2.2 -3.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3092 -2.2 -3.2 ribonuclease III, bacterial compare
Psest_2988 -2.1 -7.7 aspartate kinase, monofunctional class compare
Psest_3816 -2.1 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_3377 -2.1 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4286 -2.1 -11.7 Glutamine synthetase conserved
Psest_2650 -2.0 -4.1 hypothetical protein compare
Psest_2067 -2.0 -2.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0218 -2.0 -3.6 Acyl-CoA hydrolase compare
Psest_3047 -2.0 -1.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_4191 -2.0 -3.6 Transcriptional regulator compare
Psest_4305 -1.9 -4.0 NAD-dependent aldehyde dehydrogenases conserved
Psest_3943 -1.9 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3456 -1.9 -1.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_3944 -1.9 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0094 -1.8 -2.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_4285 -1.8 -6.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase conserved
Psest_1999 -1.7 -2.0 pseudouridine synthase compare
Psest_2945 -1.7 -3.3 septum site-determining protein MinC compare
Psest_1496 -1.7 -2.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_0170 -1.7 -5.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_1242 -1.6 -3.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0498 -1.6 -2.6 ribosome small subunit-dependent GTPase A compare
Psest_3818 -1.5 -7.2 endoribonuclease L-PSP, putative compare
Psest_1037 -1.5 -2.1 acetolactate synthase, small subunit compare
Psest_3297 -1.5 -7.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2027 -1.5 -10.4 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1814 -1.5 -10.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0998 -1.5 -3.5 poly(A) polymerase compare
Psest_1506 -1.5 -5.5 queuosine biosynthesis protein QueC compare
Psest_3455 -1.5 -2.6 Dihaem cytochrome c. compare
Psest_2845 -1.4 -7.8 [Protein-PII] uridylyltransferase compare
Psest_1473 -1.4 -7.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0691 -1.4 -9.6 ribonuclease R compare
Psest_3399 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3554 -1.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3749 -1.3 -7.2 Response regulator of the LytR/AlgR family compare
Psest_2329 -1.3 -9.2 Transcriptional regulator compare
Psest_1640 -1.3 -9.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3960 -1.3 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1008 -1.3 -1.7 hypothetical protein compare
Psest_0212 -1.2 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_3904 -1.2 -1.0 hypothetical protein compare
Psest_0227 -1.2 -1.6 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1704 -1.2 -1.8 Dehydrogenases (flavoproteins) compare
Psest_3449 -1.2 -1.3 DJ-1 family protein compare
Psest_3391 -1.2 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2079 -1.2 -9.1 Predicted permeases compare
Psest_3518 -1.1 -1.1 Transcriptional regulators compare
Psest_1293 -1.1 -2.1 VanZ like family. compare
Psest_0575 -1.1 -0.9 HrpA-like helicases compare
Psest_2646 -1.1 -3.1 SOS regulatory protein LexA compare
Psest_1505 -1.1 -1.5 Organic radical activating enzymes compare
Psest_2316 -1.1 -7.9 phosphoenolpyruvate synthase compare
Psest_3894 -1.1 -3.3 Carbon starvation protein, predicted membrane protein compare
Psest_3702 -1.0 -2.3 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_1679 -1.0 -1.4 ribonuclease, Rne/Rng family compare
Psest_0725 -1.0 -2.5 Negative regulator of beta-lactamase expression compare
Psest_3793 -1.0 -5.0 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_3795 -1.0 -5.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2158 -1.0 -8.0 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3573 -1.0 -3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_3721 -1.0 -5.0 Malic enzyme compare
Psest_3113 -1.0 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1492 -1.0 -6.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2719 -1.0 -3.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1815 -1.0 -7.4 pseudaminic acid synthase compare
Psest_4303 -0.9 -1.0 HEAT repeat. compare
Psest_0215 -0.9 -3.2 hypothetical protein compare
Psest_3031 -0.9 -1.0 hypothetical protein compare
Psest_1053 -0.9 -1.5 hypothetical protein compare
Psest_0225 -0.9 -1.1 Predicted permease, DMT superfamily compare
Psest_2643 -0.9 -2.6 Beta-glucosidase-related glycosidases compare
Psest_1643 -0.9 -1.5 hypothetical protein compare
Psest_2531 -0.9 -7.0 cytochrome c oxidase accessory protein FixG compare
Psest_2090 -0.9 -1.7 Protein of unknown function (DUF2970). compare
Psest_3766 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_1318 -0.8 -3.1 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_2671 -0.8 -1.3 Transcriptional regulator compare
Psest_3895 -0.8 -1.3 hypothetical protein compare
Psest_1813 -0.8 -6.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2810 -0.8 -3.4 5'/3'-nucleotidase SurE compare
Psest_1176 -0.8 -1.6 Urea transporter compare
Psest_0951 -0.8 -5.5 FAD/FMN-containing dehydrogenases compare
Psest_2983 -0.8 -2.4 hypothetical protein compare
Psest_2285 -0.8 -2.8 ATP-dependent protease La compare
Psest_0722 -0.8 -4.7 Predicted ATPase compare
Psest_0520 -0.8 -0.8 hypothetical protein compare
Psest_2532 -0.8 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0955 -0.8 -2.6 D,L-lactate:H+ symporter (from data) compare
Psest_0993 -0.8 -5.0 Glucose-6-phosphate isomerase compare
Psest_3307 -0.8 -4.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3670 -0.8 -5.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_1439 -0.8 -4.3 Transcriptional regulator compare
Psest_1145 -0.8 -3.2 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_2953 -0.8 -1.8 Histone acetyltransferase compare
Psest_0113 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_4363 -0.7 -4.5 ATPases involved in chromosome partitioning compare
Psest_0417 -0.7 -1.6 Acyl-CoA dehydrogenases compare
Psest_2566 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2304 -0.7 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1966 -0.7 -5.8 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0719 -0.7 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_0276 -0.7 -3.8 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_2946 -0.7 -2.2 septum site-determining protein MinD compare
Psest_2778 -0.7 -1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0209 -0.7 -1.0 membrane protein AbrB duplication compare
Psest_1089 -0.7 -2.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0969 -0.7 -1.7 transcription elongation factor GreA compare
Psest_0103 -0.7 -1.4 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_3146 -0.7 -1.2 hypothetical protein compare
Psest_2708 -0.7 -4.3 transaldolase compare
Psest_4237 -0.7 -4.0 succinate-semialdehyde dehydrogenase compare
Psest_3114 -0.7 -3.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0737 -0.7 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_1001 -0.7 -1.6 hypothetical protein compare
Psest_2331 -0.7 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1056 -0.7 -1.1 2-isopropylmalate synthase, bacterial type compare
Psest_2384 -0.7 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2276 -0.7 -3.4 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_0154 -0.7 -2.2 Uncharacterized conserved protein compare
Psest_3927 -0.7 -2.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2872 -0.6 -1.6 protein RecA compare
Psest_2274 -0.6 -2.5 coenzyme PQQ biosynthesis protein A compare
Psest_3494 -0.6 -1.2 hypothetical protein compare
Psest_0327 -0.6 -3.0 Transcriptional regulator compare
Psest_2248 -0.6 -1.8 Predicted transcriptional regulators compare
Psest_1241 -0.6 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0097 -0.6 -0.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1600 -0.6 -1.4 hypothetical protein compare
Psest_3937 -0.6 -0.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0958 -0.6 -4.2 Oligoketide cyclase/lipid transport protein compare
Psest_1627 -0.6 -4.2 Superfamily II DNA and RNA helicases compare
Psest_2798 -0.6 -1.7 Truncated hemoglobins compare
Psest_3419 -0.6 -3.3 Predicted transcriptional regulators compare
Psest_2277 -0.6 -1.8 coenzyme PQQ biosynthesis protein A compare
Psest_0161 -0.6 -1.2 Membrane-bound metallopeptidase compare
Psest_1870 -0.6 -1.2 Transcriptional regulators compare
Psest_4302 -0.6 -2.6 hypothetical protein compare
Psest_0782 -0.6 -2.1 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_3696 -0.6 -3.0 Predicted thioesterase compare
Psest_2614 -0.6 -5.2 Predicted glycosyltransferases compare
Psest_4044 -0.6 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4177 -0.6 -1.5 flagellar biosynthetic protein FliP compare
Psest_2530 -0.6 -2.9 cytochrome c oxidase, cbb3-type, subunit III compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas stutzeri RCH2

For nitrogen source Putrescine Dihydrochloride across organisms