Experiment set2H3 for Pseudomonas stutzeri RCH2

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -6.6 -4.5 methionine biosynthesis protein MetW compare
Psest_2088 -6.4 -4.4 Uncharacterized protein conserved in bacteria compare
Psest_2584 -6.3 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_3647 -6.0 -5.8 Indole-3-glycerol phosphate synthase compare
Psest_3866 -5.8 -13.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3384 -5.8 -7.9 glutamate 5-kinase compare
Psest_3650 -5.7 -5.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0508 -5.6 -6.7 gamma-glutamyl phosphate reductase compare
Psest_0152 -5.6 -7.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3648 -5.6 -5.5 anthranilate phosphoribosyltransferase compare
Psest_2590 -5.5 -2.7 3-isopropylmalate dehydratase, small subunit compare
Psest_2578 -5.5 -15.1 O-succinylhomoserine sulfhydrylase compare
Psest_1473 -5.5 -10.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2591 -5.4 -3.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0325 -5.3 -17.0 Putative threonine efflux protein compare
Psest_3864 -5.2 -14.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0155 -5.2 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -5.2 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3298 -5.1 -10.9 histidinol dehydrogenase compare
Psest_0280 -5.0 -17.5 homoserine O-acetyltransferase compare
Psest_0153 -4.9 -15.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2589 -4.9 -15.6 3-isopropylmalate dehydrogenase compare
Psest_0687 -4.8 -9.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4078 -4.6 -3.2 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0062 -4.4 -8.8 tryptophan synthase, alpha subunit compare
Psest_0999 -4.3 -3.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3810 -4.2 -2.9 orotate phosphoribosyltransferase compare
Psest_1947 -4.2 -2.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1772 -4.1 -7.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4077 -4.0 -15.3 amino acid carrier protein compare
Psest_2579 -4.0 -4.7 amidophosphoribosyltransferase compare
Psest_1452 -3.9 -7.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3649 -3.8 -10.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0063 -3.5 -6.7 tryptophan synthase, beta subunit compare
Psest_1474 -3.5 -3.4 phosphoribosylaminoimidazole synthetase compare
Psest_1704 -3.4 -3.2 Dehydrogenases (flavoproteins) compare
Psest_3226 -3.3 -2.2 Predicted membrane protein compare
Psest_3721 -3.2 -10.7 Malic enzyme compare
Psest_0313 -3.2 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3159 -3.2 -9.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3944 -3.2 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0489 -2.9 -4.3 phosphoserine phosphatase SerB compare
Psest_3123 -2.9 -5.6 dihydroorotase, homodimeric type compare
Psest_1686 -2.9 -8.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2329 -2.8 -19.1 Transcriptional regulator compare
Psest_1013 -2.6 -4.8 phosphoribosylamine--glycine ligase compare
Psest_1037 -2.5 -4.3 acetolactate synthase, small subunit compare
Psest_4076 -2.4 -8.4 hypothetical protein compare
Psest_2104 -2.3 -6.0 IscR-regulated protein YhgI compare
Psest_1496 -2.2 -3.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_0326 -2.0 -6.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1814 -2.0 -14.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2862 -2.0 -10.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1655 -2.0 -5.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3297 -1.9 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0170 -1.9 -7.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_3818 -1.8 -7.8 endoribonuclease L-PSP, putative compare
Psest_2324 -1.7 -13.4 hypothetical protein compare
Psest_1659 -1.7 -4.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4298 -1.7 -1.3 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2325 -1.6 -9.9 alpha-L-glutamate ligase-related protein compare
Psest_2863 -1.6 -6.5 Transcriptional regulator compare
Psest_0498 -1.6 -2.9 ribosome small subunit-dependent GTPase A compare
Psest_3988 -1.6 -8.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2090 -1.6 -4.1 Protein of unknown function (DUF2970). compare
Psest_1417 -1.6 -1.7 hypothetical protein compare
Psest_3998 -1.6 -4.7 glutamate--cysteine ligase compare
Psest_2447 -1.6 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0411 -1.6 -10.0 biotin synthetase compare
Psest_0466 -1.5 -4.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3943 -1.5 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0292 -1.5 -3.3 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0284 -1.4 -11.0 pyridoxal phosphate enzyme, YggS family compare
Psest_1661 -1.4 -3.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1919 -1.4 -2.9 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3322 -1.4 -11.8 TIGR02099 family protein compare
Psest_0442 -1.4 -7.7 ATPases of the AAA+ class compare
Psest_3531 -1.4 -1.2 Peptidase propeptide and YPEB domain. compare
Psest_2944 -1.3 -5.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0193 -1.3 -1.0 conserved hypothetical protein compare
Psest_2872 -1.3 -2.9 protein RecA compare
Psest_0285 -1.3 -8.7 pilus retraction protein PilT compare
Psest_0678 -1.3 -3.2 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_4363 -1.3 -7.3 ATPases involved in chromosome partitioning compare
Psest_0359 -1.3 -2.7 Transcriptional regulators compare
Psest_1657 -1.3 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1277 -1.2 -9.2 2-isopropylmalate synthase, yeast type compare
Psest_3767 -1.2 -4.6 tyrosine recombinase XerC compare
Psest_1656 -1.2 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0097 -1.2 -1.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1204 -1.2 -2.1 Transcriptional regulators compare
Psest_2719 -1.2 -4.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1724 -1.1 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2648 -1.1 -3.3 hypothetical protein compare
Psest_2651 -1.1 -3.9 DNA topoisomerase I, bacterial compare
Psest_3550 -1.1 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1813 -1.1 -7.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2946 -1.1 -4.8 septum site-determining protein MinD compare
Psest_2768 -1.1 -2.7 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_3546 -1.0 -1.3 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4100 -1.0 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_4191 -1.0 -1.8 Transcriptional regulator compare
Psest_0515 -1.0 -3.8 rare lipoprotein A compare
Psest_0708 -1.0 -2.1 outer membrane assembly lipoprotein YfiO compare
Psest_4273 -1.0 -6.6 Lysophospholipase compare
Psest_0281 -0.9 -5.3 Dynamin family. compare
Psest_1647 -0.9 -3.6 Lhr-like helicases compare
Psest_3178 -0.9 -3.7 formyltetrahydrofolate deformylase compare
Psest_0306 -0.9 -7.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2531 -0.9 -7.5 cytochrome c oxidase accessory protein FixG compare
Psest_2323 -0.9 -6.5 Uncharacterized protein conserved in archaea compare
Psest_1292 -0.9 -6.0 monothiol glutaredoxin, Grx4 family compare
Psest_2446 -0.9 -1.8 acetyl-CoA acetyltransferases compare
Psest_0066 -0.9 -1.5 Protein of unknown function (DUF3060). compare
Psest_0737 -0.9 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_0316 -0.9 -1.5 Cytochrome c556 compare
Psest_0740 -0.9 -1.6 Transcriptional regulator compare
Psest_0297 -0.9 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3148 -0.9 -1.7 hypothetical protein compare
Psest_1974 -0.8 -2.8 integration host factor, alpha subunit compare
Psest_1031 -0.8 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_1163 -0.8 -3.4 diguanylate cyclase (GGDEF) domain compare
Psest_0367 -0.8 -1.2 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4044 -0.8 -5.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4393 -0.8 -3.6 Capsule polysaccharide export protein compare
Psest_0722 -0.8 -5.1 Predicted ATPase compare
Psest_2333 -0.8 -1.2 Protein of unknown function (DUF3359). compare
Psest_1111 -0.8 -2.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3927 -0.8 -3.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1920 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1302 -0.8 -3.4 Predicted thioesterase compare
Psest_1907 -0.8 -1.1 hypothetical protein compare
Psest_4003 -0.8 -3.2 TIGR00153 family protein compare
Psest_1008 -0.7 -1.6 hypothetical protein compare
Psest_0412 -0.7 -5.2 8-amino-7-oxononanoate synthase compare
Psest_0551 -0.7 -3.6 PEP phosphonomutase and related enzymes compare
Psest_3536 -0.7 -1.1 hypothetical protein compare
Psest_2645 -0.7 -4.3 Transcriptional regulator compare
Psest_0417 -0.7 -2.4 Acyl-CoA dehydrogenases compare
Psest_0414 -0.7 -3.4 biotin biosynthesis protein BioC compare
Psest_2899 -0.7 -1.9 hypothetical protein compare
Psest_0958 -0.7 -4.6 Oligoketide cyclase/lipid transport protein compare
Psest_1631 -0.7 -1.2 Uncharacterized conserved small protein compare
Psest_2153 -0.7 -2.0 formate dehydrogenase, gamma subunit compare
Psest_2532 -0.7 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3301 -0.7 -1.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_3790 -0.7 -3.9 Cytochrome c5 compare
Psest_1012 -0.7 -3.1 Signal transduction histidine kinase compare
Psest_1000 -0.7 -4.7 PAS domain S-box compare
Psest_1640 -0.7 -5.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3659 -0.7 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0103 -0.7 -1.3 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1144 -0.7 -3.5 AmpG-related permease compare
Psest_0537 -0.7 -1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3720 -0.6 -5.5 penicillin-binding protein, 1A family compare
Psest_0182 -0.6 -3.2 glycine cleavage system H protein compare
Psest_2379 -0.6 -4.4 PAS domain S-box compare
Psest_0959 -0.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4310 -0.6 -1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3307 -0.6 -4.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0415 -0.6 -2.9 dethiobiotin synthase compare
Psest_4124 -0.6 -2.4 hypothetical protein compare
Psest_0086 -0.6 -2.0 hypothetical protein compare
Psest_3478 -0.6 -1.0 Cytochrome B561 compare
Psest_0691 -0.6 -4.7 ribonuclease R compare
Psest_1663 -0.6 -2.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3146 -0.6 -1.8 hypothetical protein compare
Psest_1765 -0.6 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4196 -0.6 -1.3 Type II secretory pathway, component PulK compare
Psest_0845 -0.6 -0.7 hypothetical protein compare
Psest_1679 -0.6 -1.1 ribonuclease, Rne/Rng family compare
Psest_1958 -0.6 -2.8 Glutaredoxin-like domain (DUF836). compare
Psest_2907 -0.6 -1.1 Protein of unknown function (DUF3618). compare
Psest_0919 -0.6 -1.8 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3456 -0.6 -0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_2775 -0.6 -2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_3878 -0.6 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1805 -0.6 -1.8 integration host factor, beta subunit compare
Psest_1660 -0.6 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0413 -0.6 -3.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3645 -0.6 -3.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4307 -0.6 -1.7 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3191 -0.6 -1.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0848 -0.6 -1.7 hypothetical protein compare
Psest_1241 -0.6 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3766 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1185 -0.6 -1.6 heavy metal response regulator compare
Psest_3117 -0.6 -3.1 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0296 -0.6 -3.8 glutathione synthetase, prokaryotic compare
Psest_1227 -0.6 -1.5 Predicted SAM-dependent methyltransferase compare
Psest_3573 -0.6 -2.0 dTDP-4-dehydrorhamnose reductase compare
Psest_2293 -0.6 -1.2 hypothetical protein compare
Psest_1986 -0.6 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3537 -0.6 -2.7 hypothetical protein compare
Psest_3323 -0.5 -2.2 ribonuclease, Rne/Rng family compare
Psest_0744 -0.5 -0.6 Uncharacterized conserved protein compare
Psest_2525 -0.5 -2.3 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_3816 -0.5 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_1509 -0.5 -3.7 quinolinate synthetase complex, A subunit compare
Psest_1934 -0.5 -3.2 Predicted thioesterase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Pseudomonas stutzeri RCH2

For carbon source L-Asparagine across organisms