Experiment set2H28 for Shewanella oneidensis MR-1

Compare to:

LB with Sodium Chloride 350 mM

200 most detrimental genes:

  gene name fitness t score description  
SO2668 +1.6 7.3 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO2671 +1.5 9.4 conserved hypothetical protein (NCBI ptt file) compare
SO2675 +1.3 4.7 conserved hypothetical protein (NCBI ptt file) compare
SO2238 ptsH +1.1 2.5 phosphocarrier protein HPr (NCBI ptt file) compare
SO2658 +1.1 3.5 hypothetical protein (NCBI ptt file) compare
SO1664 galE +1.0 7.5 UDP-glucose 4-epimerase (NCBI ptt file) compare
SO4680 +1.0 7.5 conserved hypothetical protein (NCBI ptt file) compare
SO2657 +1.0 5.2 hypothetical protein (NCBI ptt file) compare
SO2239 +0.9 3.3 conserved hypothetical protein (NCBI ptt file) compare
SO4687 ugd +0.9 7.6 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO2656 +0.9 2.3 hypothetical protein (NCBI ptt file) compare
SO3257 +0.8 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO2232.1 +0.8 2.7 hypothetical ABC transporter (NCBI ptt file) compare
SO4679 +0.8 4.8 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO0508.1 +0.8 2.9 hypothetical Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI ptt file) compare
SO2237 ptsI +0.8 2.3 phosphoenolpyruvate-protein phosphotransferase (NCBI ptt file) compare
SO2872 +0.8 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO4686 +0.8 5.8 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO2236 crr +0.8 4.0 PTS system, glucose-specific IIA component (NCBI ptt file) compare
SO1475 +0.7 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2472 +0.7 3.5 D-alanyl-D-alanine carboxypeptidase-related protein (NCBI ptt file) compare
SO3745 rfaE +0.7 6.0 ADP-heptose synthase (NCBI ptt file) compare
SO0216 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
SO2659 +0.7 4.6 hypothetical protein (NCBI ptt file) compare
SO4678 +0.7 5.2 heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file) compare
SO2753.2 +0.7 2.9 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO2113 +0.7 5.6 conserved hypothetical protein (NCBI ptt file) compare
SO2241 +0.7 3.9 conserved hypothetical protein (NCBI ptt file) compare
SO2250 nagZ +0.7 1.6 beta-hexosaminidase (NCBI ptt file) compare
SO0428 +0.7 6.1 conserved hypothetical protein (NCBI ptt file) compare
SO3219 fliO +0.6 1.9 flagellar protein FliO (NCBI ptt file) compare
SO3233 fliS +0.6 4.2 flagellar protein FliS (NCBI ptt file) compare
SO2474 +0.6 1.6 carbonic anhydrase family protein (NCBI ptt file) compare
SO0775 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO1530 pomB +0.6 2.9 sodium-driven polar flagellar protein PomB (NCBI ptt file) compare
SO3199 +0.6 1.9 FlhB domain protein (NCBI ptt file) compare
SO1890 +0.6 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO2672 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2256 +0.6 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO3255 flgN +0.6 1.9 flagellar biosynthetic protein FlgN (NCBI ptt file) compare
SO4690 +0.6 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO0466 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
SO2245 dnaQ-1 +0.6 1.4 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO2665 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO3708 +0.6 1.3 membrane protein, putative (NCBI ptt file) compare
SO2114 +0.6 4.0 conserved hypothetical protein (NCBI ptt file) compare
SO1855 rmf +0.5 1.2 ribosome modulation factor (NCBI ptt file) compare
SO4688 +0.5 4.5 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO3126 ogt +0.5 0.9 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
SO2685 +0.5 2.3 prophage MuSo2, major head subunit, putative (NCBI ptt file) compare
SO2849 +0.5 1.2 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2422 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1353 +0.5 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO2661 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
SO_2754 +0.5 1.9 no description compare
SO_2233 +0.5 2.1 no description compare
SO0208.1 +0.5 1.4 putative transposase (NCBI ptt file) compare
SO3265 +0.5 4.0 conserved hypothetical protein (NCBI ptt file) compare
SO3558 +0.5 2.9 hypothetical protein (NCBI ptt file) compare
SO_1299 +0.5 1.7 no description compare
SO2663 +0.5 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO2821 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO3261 +0.5 3.8 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO4275.3 +0.5 1.1 hypothetical prophage Sf6-like integrase (NCBI ptt file) compare
SO2441 thiG +0.5 2.1 thiG protein (NCBI ptt file) compare
SO1306 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1617 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO4180 +0.5 4.1 hypothetical protein (NCBI ptt file) compare
SOA0130 +0.5 1.0 ISSod4, transposase (NCBI ptt file) compare
SO2664 +0.5 3.2 hypothetical protein (NCBI ptt file) compare
SO3263 +0.5 3.0 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO1886 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO3210 fliA +0.5 2.4 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO4159 +0.5 2.6 hypothetical protein (NCBI ptt file) compare
SO3814 +0.5 3.0 ampG protein, putative (NCBI ptt file) compare
SO0086 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO3819.4 +0.5 1.7 hypothetical ammonia permease (NCBI ptt file) compare
SO3936 motX +0.5 2.3 sodium-type flagellar protein MotX (NCBI ptt file) compare
SO3258 +0.4 3.3 conserved hypothetical protein (NCBI ptt file) compare
SO4179 +0.4 3.8 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO0937 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO2986 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO4178 +0.4 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO2244 +0.4 1.9 transcriptional regulator, LacI family (NCBI ptt file) compare
SO3328 +0.4 1.6 acetyltransferase, GNAT family (NCBI ptt file) compare
SO4197 menG-2 +0.4 1.7 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) compare
SO_2786 +0.4 1.1 no description compare
SO2761 purN +0.4 1.3 phosphoribosylglycinamide formyltransferase (NCBI ptt file) compare
SO2395 +0.4 2.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
SO2759 upp +0.4 3.2 uracil phosphoribosyltransferase (NCBI ptt file) compare
SO1166 +0.4 2.0 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO4599 +0.4 3.1 ribonuclease, T2 family (NCBI ptt file) compare
SO2229 hrpA +0.4 3.2 ATP-dependent helicase HrpA (NCBI ptt file) compare
SO2213.1 +0.4 1.2 hypothetical glucose-galactose transporter (NCBI ptt file) compare
SO2223 +0.4 2.5 peptidase, putative (NCBI ptt file) compare
SO2234 +0.4 0.7 hypothetical protein (NCBI ptt file) compare
SO0564 +0.4 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO4427 +0.4 3.1 sensor histidine kinase (NCBI ptt file) compare
SO2240 +0.4 2.5 methyl-accepting chemotaxis protein (NCBI ptt file) compare
SO2677 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO3581 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO_t083 tRNA-Arg-8 +0.4 1.7 tRNA-Arg (RefSeq) compare
SO4551 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2125 cheD-1 +0.4 1.0 chemotaxis protein CheD (NCBI ptt file) compare
SO3699 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO3249 flgC +0.4 2.0 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO4484 +0.4 1.3 cytochrome c-type protein Shp (NCBI ptt file) compare
SO2268 hscA +0.4 1.0 chaperone protein HscA (NCBI ptt file) compare
SO3239.3 +0.4 3.1 hypothetical flagellar hook-associated protein (NCBI ptt file) compare
SO1582 +0.4 1.5 transcriptional regulator, MarR family (NCBI ptt file) compare
SO3218 fliP +0.4 1.8 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SO3900 +0.4 2.4 yqiA-like hydrolase, affects the cell envelope (from data) compare
SO1213 +0.4 1.0 hydrolase, TatD family (NCBI ptt file) compare
SO0045 +0.4 1.2 Rrf2 family protein (NCBI ptt file) compare
SO2673 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO3672 exbD1 +0.4 1.3 TonB system transport protein ExbD1 (NCBI ptt file) compare
SO2247 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO1581 phnA +0.4 2.0 phnA protein (NCBI ptt file) compare
SO1307 aqpZ +0.4 2.7 aquaporin Z (NCBI ptt file) compare
SO4058 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0963 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2851 +0.4 1.1 histidinol phosphatase domain protein (NCBI ptt file) compare
SO1378 +0.4 1.1 ThiJ/PfpI family protein (NCBI ptt file) compare
SO2254 +0.4 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO3262 ilvB +0.4 3.2 acetolactate synthase isozyme I, large subunit (NCBI ptt file) compare
SO1250 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO0994 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4379 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
SO2913 pflA +0.4 1.7 pyruvate formate-lyase 1 activating enzyme (NCBI ptt file) compare
SO2686 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO1991 +0.4 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3895 +0.4 2.3 HesA/MoeB/ThiF family protein (NCBI ptt file) compare
SO3677 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO0837 +0.4 1.9 beta-lactamase, putative (NCBI ptt file) compare
SO1985 +0.4 2.0 transcriptional activator, putative (NCBI ptt file) compare
SO3422 yfiA-2 +0.4 2.5 ribosomal subunit interface protein (NCBI ptt file) compare
SO3268 +0.4 3.1 alpha amylase domain protein (NCBI ptt file) compare
SO0129 +0.4 2.0 conserved hypothetical protein TIGR00427 (NCBI ptt file) compare
SO1485 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO1748 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO0410 mutT +0.4 0.9 mutator mutT protein (NCBI ptt file) compare
SO0797 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO2423 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO3217 fliQ +0.4 1.9 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO1298.3 +0.4 1.1 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO1159 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO1995 +0.4 1.7 peptidyl-prolyl cis-trans isomerase, FkbP family (NCBI ptt file) compare
SO0198.1 +0.4 1.8 putative transposase (NCBI ptt file) compare
SO2721 +0.3 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO1529 pomA +0.3 1.3 chemotaxis motA protein (NCBI ptt file) compare
SO4154 +0.3 2.5 transcriptional regulator, LysR family (NCBI ptt file) compare
SO2694 +0.3 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO_2783 +0.3 0.9 no description compare
SO2894 +0.3 1.4 YaiI/YqxD family protein (NCBI ptt file) compare
SO3225 fliI +0.3 2.4 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO4153 +0.3 2.1 N-ethylmaleimide reductase, putative (NCBI ptt file) compare
SO4146 +0.3 2.7 toxin secretion ABC transporter protein, HlyB family (NCBI ptt file) compare
SO3216 fliR +0.3 2.1 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO3064 purF +0.3 2.0 amidophosphoribosyltransferase (NCBI ptt file) compare
SO3243 flgH +0.3 1.7 flagellar L-ring protein FlgH (NCBI ptt file) compare
SO2888 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO4476 +0.3 2.5 spheroplast protein y precursor, putative (NCBI ptt file) compare
SO_t012 tRNA-Gly-1 +0.3 0.9 tRNA-Gly (RefSeq) compare
SO3253 +0.3 2.6 flagellar basal-body P-ring formation protein FlgA, putative (NCBI ptt file) compare
SO2699 +0.3 2.1 prophage MuSo2, 43 kDa tail protein, putative (NCBI ptt file) compare
SO3224 fliJ +0.3 1.5 flagellar protein FliJ (NCBI ptt file) compare
SO3121 +0.3 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2623 aat +0.3 1.9 leucyl/phenylalanyl-tRNA--protein transferase (NCBI ptt file) compare
SO4547 +0.3 2.1 hypothetical protein (NCBI ptt file) compare
SO3280 +0.3 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1622 +0.3 1.5 hypothetical flavodoxin (NCBI ptt file) compare
SO0551 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3667 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3234 +0.3 2.4 hypothetical protein (NCBI ptt file) compare
SO3402 +0.3 0.8 hypothetical protein (NCBI ptt file) compare
SO2155 +0.3 1.5 glyoxalase family protein (NCBI ptt file) compare
SO4149 +0.3 3.1 RTX toxin, putative (NCBI ptt file) compare
SO1910 +0.3 1.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative (NCBI ptt file) compare
SO2194 +0.3 1.5 OmpA family protein (NCBI ptt file) compare
SO3645 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO2676 +0.3 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1994 +0.3 2.0 membrane-bound lytic transglycolase-related protein (NCBI ptt file) compare
SO3729 +0.3 1.6 hypothetical phospholipase A (NCBI ptt file) compare
SO_3068 +0.3 1.5 no description compare
SO2500 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO0701 +0.3 2.0 transcriptional regulator, LysR family (NCBI ptt file) compare
SO2688 +0.3 2.2 hypothetical protein (NCBI ptt file) compare
SO2704 +0.3 2.3 prophage MuSo2, tail fiber protein, putative (NCBI ptt file) compare
SO4727 +0.3 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1112 bfr1 +0.3 1.0 bacterioferritin subunit 1 (NCBI ptt file) compare
SO2823 +0.3 1.8 response regulator (NCBI ptt file) compare
SO2914 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2660 +0.3 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO3239 flgL +0.3 1.3 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO1834 +0.3 2.2 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2736 +0.3 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2887 dsbB +0.3 2.0 disulfide bond formation protein b (NCBI ptt file) compare
SO4148 +0.3 2.2 HlyD family secretion protein (NCBI ptt file) compare
SO0521 +0.3 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2389 emrD +0.3 2.2 multidrug resistance protein D (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chloride in Shewanella oneidensis MR-1

For stress Sodium Chloride across organisms