Experiment set2H27 for Pseudomonas stutzeri RCH2

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0508 -6.5 -4.5 gamma-glutamyl phosphate reductase compare
Psest_3317 -6.3 -7.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3647 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
Psest_0279 -6.2 -4.3 methionine biosynthesis protein MetW compare
Psest_2650 -6.2 -4.3 hypothetical protein compare
Psest_3862 -6.2 -13.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3648 -5.9 -4.1 anthranilate phosphoribosyltransferase compare
Psest_0325 -5.8 -22.3 Putative threonine efflux protein compare
Psest_2584 -5.8 -4.0 Phosphoribosylanthranilate isomerase compare
Psest_0153 -5.7 -13.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0152 -5.7 -6.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_2578 -5.6 -12.5 O-succinylhomoserine sulfhydrylase compare
Psest_3864 -5.6 -13.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0155 -5.4 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3649 -5.3 -6.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3866 -5.2 -18.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2591 -5.1 -5.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3650 -5.1 -10.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2579 -5.0 -6.0 amidophosphoribosyltransferase compare
Psest_3710 -4.9 -10.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3299 -4.8 -14.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3384 -4.8 -10.1 glutamate 5-kinase compare
Psest_3931 -4.6 -6.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_0280 -4.6 -16.0 homoserine O-acetyltransferase compare
Psest_3944 -4.6 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0062 -4.5 -10.9 tryptophan synthase, alpha subunit compare
Psest_3794 -4.5 -12.3 Transcriptional regulators conserved
Psest_0953 -4.4 -12.4 iron-sulfur cluster-binding protein compare
Psest_3711 -4.3 -11.9 Glutamate synthase domain 2 compare
Psest_3298 -4.3 -13.0 histidinol dehydrogenase compare
Psest_0954 -4.3 -11.3 Fe-S oxidoreductase compare
Psest_3818 -4.3 -9.8 endoribonuclease L-PSP, putative compare
Psest_0687 -4.2 -9.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -4.2 -13.9 3-isopropylmalate dehydrogenase compare
Psest_1474 -4.2 -7.0 phosphoribosylaminoimidazole synthetase compare
Psest_1452 -4.2 -10.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0063 -4.2 -5.7 tryptophan synthase, beta subunit compare
Psest_0952 -4.1 -4.8 Uncharacterized conserved protein compare
Psest_0326 -4.1 -13.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0489 -4.1 -3.9 phosphoserine phosphatase SerB compare
Psest_2590 -4.0 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psest_3793 -3.9 -9.2 D-alanine dehydrogenase (EC 1.4.99.-) (from data) conserved
Psest_0411 -3.8 -13.3 biotin synthetase compare
Psest_3932 -3.7 -5.6 nitrogen regulation protein NR(I) compare
Psest_2845 -3.6 -14.1 [Protein-PII] uridylyltransferase compare
Psest_3123 -3.6 -5.8 dihydroorotase, homodimeric type compare
Psest_3159 -3.5 -11.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3226 -3.5 -2.1 Predicted membrane protein compare
Psest_2088 -3.5 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_3810 -3.4 -4.0 orotate phosphoribosyltransferase compare
Psest_1295 -3.4 -10.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2104 -3.3 -3.2 IscR-regulated protein YhgI compare
Psest_3297 -3.3 -14.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1947 -3.3 -2.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0313 -3.2 -6.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2329 -3.2 -18.5 Transcriptional regulator compare
Psest_3960 -3.1 -2.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1013 -3.0 -5.4 phosphoribosylamine--glycine ligase compare
Psest_3338 -3.0 -3.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1473 -3.0 -10.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3943 -2.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3998 -2.6 -5.1 glutamate--cysteine ligase compare
Psest_2134 -2.5 -15.3 amino acid carrier protein compare
Psest_3178 -2.5 -6.5 formyltetrahydrofolate deformylase compare
Psest_0398 -2.5 -9.1 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2090 -2.4 -6.1 Protein of unknown function (DUF2970). compare
Psest_0306 -2.3 -15.4 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1496 -2.2 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_4085 -2.1 -14.3 Biotin carboxylase compare
Psest_1506 -2.1 -8.0 queuosine biosynthesis protein QueC compare
Psest_4084 -2.1 -14.1 oxaloacetate decarboxylase alpha subunit compare
Psest_1037 -2.1 -3.1 acetolactate synthase, small subunit compare
Psest_4191 -2.0 -3.7 Transcriptional regulator compare
Psest_1815 -2.0 -14.1 pseudaminic acid synthase compare
Psest_0412 -2.0 -11.0 8-amino-7-oxononanoate synthase compare
Psest_4086 -2.0 -11.1 Transcriptional regulator compare
Psest_0415 -2.0 -4.7 dethiobiotin synthase compare
Psest_3721 -1.9 -8.4 Malic enzyme compare
Psest_0691 -1.8 -11.7 ribonuclease R compare
Psest_0413 -1.8 -7.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1505 -1.8 -2.5 Organic radical activating enzymes compare
Psest_0722 -1.8 -9.8 Predicted ATPase compare
Psest_0951 -1.8 -9.0 FAD/FMN-containing dehydrogenases compare
Psest_3092 -1.8 -2.6 ribonuclease III, bacterial compare
Psest_1486 -1.8 -5.2 hypothetical protein compare
Psest_0498 -1.8 -2.7 ribosome small subunit-dependent GTPase A compare
Psest_2714 -1.7 -3.0 7-cyano-7-deazaguanine reductase compare
Psest_3322 -1.7 -14.2 TIGR02099 family protein compare
Psest_0719 -1.7 -8.0 Uncharacterized protein conserved in bacteria compare
Psest_2945 -1.7 -2.9 septum site-determining protein MinC compare
Psest_2946 -1.6 -6.0 septum site-determining protein MinD compare
Psest_0212 -1.6 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_0133 -1.6 -2.1 type VI secretion protein, VC_A0107 family compare
Psest_3339 -1.6 -5.5 Signal transduction histidine kinase compare
Psest_2324 -1.6 -12.5 hypothetical protein compare
Psest_1292 -1.6 -7.8 monothiol glutaredoxin, Grx4 family compare
Psest_0170 -1.6 -6.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_1492 -1.6 -9.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1241 -1.5 -6.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3850 -1.5 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0414 -1.5 -4.3 biotin biosynthesis protein BioC compare
Psest_0218 -1.5 -2.5 Acyl-CoA hydrolase compare
Psest_1242 -1.5 -2.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2645 -1.4 -7.6 Transcriptional regulator compare
Psest_1640 -1.4 -10.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2316 -1.4 -9.8 phosphoenolpyruvate synthase compare
Psest_2325 -1.4 -8.3 alpha-L-glutamate ligase-related protein compare
Psest_4280 -1.4 -3.8 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_1686 -1.4 -4.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3766 -1.3 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0740 -1.3 -2.6 Transcriptional regulator compare
Psest_1814 -1.3 -9.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3377 -1.3 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2621 -1.3 -2.9 TadE-like protein. compare
Psest_1509 -1.3 -7.2 quinolinate synthetase complex, A subunit compare
Psest_1293 -1.3 -2.3 VanZ like family. compare
Psest_2323 -1.3 -9.7 Uncharacterized protein conserved in archaea compare
Psest_4396 -1.2 -7.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0389 -1.2 -2.3 hypothetical protein compare
Psest_3720 -1.2 -9.4 penicillin-binding protein, 1A family compare
Psest_2643 -1.2 -3.3 Beta-glucosidase-related glycosidases compare
Psest_0515 -1.2 -3.9 rare lipoprotein A compare
Psest_2079 -1.1 -9.1 Predicted permeases compare
Psest_2646 -1.1 -3.1 SOS regulatory protein LexA compare
Psest_2339 -1.1 -6.1 transcription elongation factor GreB compare
Psest_0718 -1.1 -4.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_0284 -1.1 -7.6 pyridoxal phosphate enzyme, YggS family compare
Psest_2719 -1.1 -4.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4281 -1.1 -8.3 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_1837 -1.1 -6.6 Endoglucanase compare
Psest_1679 -1.1 -1.9 ribonuclease, Rne/Rng family compare
Psest_3767 -1.1 -3.7 tyrosine recombinase XerC compare
Psest_0955 -1.1 -2.7 D,L-lactate:H+ symporter (from data) compare
Psest_0057 -1.1 -2.6 Predicted transcriptional regulators compare
Psest_0209 -1.1 -1.1 membrane protein AbrB duplication compare
Psest_3301 -1.1 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0442 -1.1 -5.4 ATPases of the AAA+ class compare
Psest_2407 -1.1 -2.7 nitrite reductase [NAD(P)H], small subunit compare
Psest_4201 -1.0 -1.8 general secretion pathway protein F compare
Psest_3792 -1.0 -2.8 Putative translation initiation inhibitor, yjgF family compare
Psest_4044 -1.0 -5.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2872 -1.0 -2.0 protein RecA compare
Psest_2810 -1.0 -4.5 5'/3'-nucleotidase SurE compare
Psest_4406 -1.0 -1.8 hypothetical protein compare
Psest_4303 -1.0 -1.2 HEAT repeat. compare
Psest_1111 -1.0 -2.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3129 -1.0 -1.9 tyrosine recombinase XerD compare
Psest_1812 -1.0 -6.0 pseudaminic acid CMP-transferase compare
Psest_0529 -1.0 -5.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0297 -0.9 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0281 -0.9 -4.9 Dynamin family. compare
Psest_2809 -0.9 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1417 -0.9 -1.2 hypothetical protein compare
Psest_2158 -0.9 -7.3 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3843 -0.9 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2862 -0.9 -6.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3573 -0.9 -3.3 dTDP-4-dehydrorhamnose reductase compare
Psest_4282 -0.9 -6.4 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_1870 -0.9 -1.8 Transcriptional regulators compare
Psest_2020 -0.9 -2.9 Uncharacterized protein involved in purine metabolism compare
Psest_0097 -0.9 -1.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1527 -0.9 -6.9 Na+/proline symporter compare
Psest_2027 -0.9 -6.3 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_4103 -0.9 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_1664 -0.9 -4.7 Glycerophosphoryl diester phosphodiesterase compare
Psest_0182 -0.9 -4.1 glycine cleavage system H protein compare
Psest_4363 -0.9 -4.8 ATPases involved in chromosome partitioning compare
Psest_0867 -0.9 -1.1 hypothetical protein compare
Psest_1008 -0.8 -1.3 hypothetical protein compare
Psest_1230 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0397 -0.8 -5.3 Small-conductance mechanosensitive channel compare
Psest_1957 -0.8 -6.7 outer membrane porin, OprD family. compare
Psest_3112 -0.8 -4.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0355 -0.8 -1.4 Glycine cleavage system regulatory protein compare
Psest_2758 -0.8 -1.3 Predicted transcriptional regulators compare
Psest_2863 -0.8 -4.1 Transcriptional regulator compare
Psest_1920 -0.8 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0378 -0.8 -1.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_3047 -0.8 -1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3645 -0.8 -5.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4284 -0.8 -5.9 Spermidine/putrescine-binding periplasmic protein compare
Psest_2413 -0.8 -1.6 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3148 -0.7 -1.3 hypothetical protein compare
Psest_2285 -0.7 -2.9 ATP-dependent protease La compare
Psest_3809 -0.7 -3.0 hypothetical protein compare
Psest_1772 -0.7 -3.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2768 -0.7 -1.6 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0094 -0.7 -1.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1700 -0.7 -2.6 Transcriptional regulator compare
Psest_0634 -0.7 -3.5 hypothetical protein compare
Psest_1488 -0.7 -6.3 outer membrane porin, OprD family. compare
Psest_3304 -0.7 -3.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3306 -0.7 -2.7 conserved hypothetical integral membrane protein compare
Psest_3777 -0.7 -2.0 diguanylate cyclase (GGDEF) domain compare
Psest_4070 -0.7 -4.7 PAS domain S-box compare
Psest_1636 -0.7 -2.5 putative transporter, required for glycine utilization (from data) compare
Psest_2949 -0.7 -4.2 Aspartyl aminopeptidase compare
Psest_4243 -0.7 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0831 -0.7 -1.0 hypothetical protein compare
Psest_3896 -0.7 -1.0 arsenite-activated ATPase ArsA compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Alanine in Pseudomonas stutzeri RCH2

For nitrogen source D-Alanine across organisms