Experiment set2H22 for Shewanella amazonensis SB2B

Compare to:

Minimal media with Sodium D,L-Lactate as carbon source

200 most detrimental genes:

  gene name fitness t score description  
Sama_3129 +11.1 32.4 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_2079 +4.9 37.1 acetyl-CoA synthetase (RefSeq) compare
Sama_0379 +4.5 42.6 hypothetical protein (RefSeq) compare
Sama_1542 +3.8 19.8 response regulator receiver protein (RefSeq) compare
Sama_1004 +3.6 29.4 U32 family peptidase (RefSeq) compare
Sama_1649 +3.5 9.6 glucose-specific PTS system component (RefSeq) compare
Sama_1541 +3.4 24.3 sensor protein PhoQ (RefSeq) compare
Sama_1002 +3.3 9.0 ferredoxin, 4Fe-4S (RefSeq) compare
Sama_2746 +3.2 27.9 sensory box protein, putative (RefSeq) compare
Sama_1281 +3.1 15.9 putative two-component response-regulatory protein YehT (RefSeq) compare
Sama_1383 +3.0 25.5 prolyl oligopeptidase family protein (RefSeq) compare
Sama_1280 +3.0 21.0 carbon starvation protein (RefSeq) compare
Sama_0586 +2.9 16.7 LysR family transcriptional regulator (RefSeq) compare
Sama_2301 +2.9 16.7 response regulator receiver protein (RefSeq) compare
Sama_2092 +2.8 21.4 OmpA/MotB (RefSeq) compare
Sama_2284 flhB +2.7 14.3 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_2313 flgG +2.7 17.3 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2314 flgF +2.7 17.2 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_2280 fliA +2.6 15.2 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_3170 metL +2.6 22.9 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_3200 +2.6 20.8 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_2111 +2.6 19.2 MATE efflux family protein (RefSeq) compare
Sama_2296 fliG +2.6 9.1 flagellar motor switch protein G (RefSeq) compare
Sama_3068 +2.6 18.8 sodium-type flagellar protein MotX (RefSeq) compare
Sama_2432 motB +2.6 14.8 flagellar motor protein MotB (RefSeq) compare
Sama_2285 fliR +2.5 16.4 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_3018 sspA +2.5 18.5 stringent starvation protein A (RefSeq) compare
Sama_2244 +2.5 19.9 polysaccharide biosynthesis protein (RefSeq) compare
Sama_2298 +2.5 10.4 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_2286 +2.4 13.0 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_3245 +2.4 15.1 urease accessory protein UreJ (RefSeq) compare
Sama_2288 +2.4 15.2 flagellar protein FliO (RefSeq) compare
Sama_1845 +2.4 13.1 methyltransferase, putative (RefSeq) compare
Sama_2287 fliP +2.4 14.9 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_1282 +2.4 17.1 signal transduction histidine kinase, LytS (RefSeq) compare
Sama_2312 flgH +2.4 14.5 flagellar basal body L-ring protein (RefSeq) compare
Sama_2321 flgA +2.4 18.5 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_0170 +2.4 8.7 general secretion pathway protein E (RefSeq) compare
Sama_2326 +2.4 15.6 hypothetical protein (RefSeq) compare
Sama_2433 +2.3 15.4 flagellar motor protein PomA (RefSeq) compare
Sama_2297 fliF +2.3 15.1 flagellar MS-ring protein (RefSeq) compare
Sama_2283 flhA +2.3 18.2 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_1868 +2.3 7.4 hypothetical protein (RefSeq) compare
Sama_2311 flgI +2.3 17.2 flagellar basal body P-ring protein (RefSeq) compare
Sama_2294 fliI +2.2 15.9 flagellum-specific ATP synthase (RefSeq) compare
Sama_1846 +2.2 16.3 methyltransferase, putative (RefSeq) compare
Sama_3296 +2.2 12.8 aconitate hydratase (RefSeq) compare
Sama_1226 +2.1 13.6 endopeptidase La (RefSeq) compare
Sama_0169 +2.1 10.5 type II and III secretion system protein (RefSeq) compare
Sama_2318 flgB +2.1 7.7 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_2293 +2.0 10.8 flagellar protein FliJ (RefSeq) compare
Sama_3214 +2.0 16.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_1454 +2.0 11.1 aminoglycoside phosphotransferase (RefSeq) compare
Sama_2317 flgC +1.9 6.8 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_2260 +1.9 9.6 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) compare
Sama_1013 +1.9 10.4 putative ABC transporter ATP-binding protein (RefSeq) compare
Sama_1909 +1.9 6.6 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_2295 fliH +1.9 7.8 flagellar assembly protein H (RefSeq) compare
Sama_1234 +1.8 1.5 peptide ABC transporter, permease protein (RefSeq) compare
Sama_0022 +1.8 14.7 Urea carboxylase (RefSeq) compare
Sama_2315 flgE +1.8 13.6 flagellar hook protein FlgE (RefSeq) compare
Sama_0023 +1.7 14.3 hypothetical protein (RefSeq) compare
Sama_0171 +1.7 6.8 general secretion pathway protein F (RefSeq) compare
Sama_3294 prpB +1.7 11.2 2-methylisocitrate lyase (RefSeq) compare
Sama_1494 +1.7 11.0 phosphate acetyltransferase (RefSeq) compare
Sama_1616 +1.7 14.0 hypothetical protein (RefSeq) compare
Sama_2335 +1.6 12.4 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_2336 +1.6 11.5 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_1615 +1.6 13.2 hypothetical protein (RefSeq) compare
Sama_0176 +1.6 3.2 general secretion pathway protein K (RefSeq) compare
Sama_0166 hslO +1.6 12.7 Hsp33-like chaperonin (RefSeq) compare
Sama_0448 +1.6 10.9 malate dehydrogenase (RefSeq) compare
Sama_2476 +1.6 12.1 twitching motility protein (RefSeq) compare
Sama_3297 +1.6 4.7 hypothetical protein (RefSeq) compare
Sama_2306 +1.6 8.7 flagellin-like protein (RefSeq) compare
Sama_2406 +1.6 13.8 ATP-dependent protease, putative (RefSeq) compare
Sama_2253 +1.5 3.6 hypothetical protein (RefSeq) compare
Sama_2316 flgD +1.5 9.3 flagellar basal body rod modification protein (RefSeq) compare
Sama_2292 +1.5 10.4 flagellar hook-length control protein FliK (RefSeq) compare
Sama_0173 +1.5 4.0 general secretion pathway protein H (RefSeq) compare
Sama_2291 fliL +1.4 8.4 flagellar basal body-associated protein FliL (RefSeq) compare
Sama_1248 +1.4 9.3 hypothetical protein (RefSeq) compare
Sama_2162 +1.4 7.7 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_3023 +1.4 6.6 hflK protein (RefSeq) compare
Sama_2621 +1.4 6.3 malate dehydrogenase (RefSeq) compare
Sama_2851 +1.4 12.1 transporter, putative (RefSeq) compare
Sama_1879 +1.4 8.6 hypothetical protein (RefSeq) compare
Sama_1085 +1.3 6.2 hypothetical protein (RefSeq) compare
Sama_2302 fliS +1.3 5.5 flagellar protein FliS (RefSeq) compare
Sama_3253 cyaA +1.3 12.5 adenylate cyclase (RefSeq) compare
Sama_1955 +1.3 11.1 sensory box histidine kinase (RefSeq) compare
Sama_3066 +1.3 7.1 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_0320 +1.3 7.5 tRNA nucleotidyltransferase (RefSeq) compare
Sama_3022 +1.3 6.5 hflC protein (RefSeq) compare
Sama_0046 +1.3 10.4 hypothetical protein (RefSeq) compare
Sama_2439 +1.3 2.1 L-lactate permease, putative (RefSeq) compare
Sama_3511 envZ +1.2 10.2 osmolarity sensor protein (RefSeq) compare
Sama_3363 +1.2 6.3 hypothetical protein (RefSeq) compare
Sama_3510 ompR +1.2 8.8 osmolarity response regulator (RefSeq) compare
Sama_3564 +1.2 7.5 hypothetical protein (RefSeq) compare
Sama_1247 +1.2 5.7 primosomal replication protein N'', putative (RefSeq) compare
Sama_2266 +1.2 8.1 amino acid/peptide transporter (RefSeq) compare
Sama_3624 +1.1 10.9 protease, putative (RefSeq) compare
Sama_2112 +1.1 6.2 ion transport protein (RefSeq) compare
Sama_0114 +1.1 10.1 hypothetical protein (RefSeq) compare
Sama_3654 gidB +1.1 7.0 16S rRNA methyltransferase GidB (RefSeq) compare
Sama_0628 +1.1 4.9 MarR family transcriptional regulator (RefSeq) compare
Sama_1217 +1.1 7.3 hypothetical protein (RefSeq) compare
Sama_2371 +1.1 8.2 hypothetical protein (RefSeq) compare
Sama_1228 +1.1 3.0 peptidyl-prolyl cis-trans isomerase D (RefSeq) compare
Sama_2930 +1.1 6.6 hypothetical protein (RefSeq) compare
Sama_1978 +1.1 3.6 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq) compare
Sama_2235 +1.1 5.9 NAD dependent epimerase/dehydratase family protein (RefSeq) compare
Sama_2841 pntB +1.0 8.2 pyridine nucleotide transhydrogenase (RefSeq) compare
Sama_1543 +1.0 5.5 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) compare
Sama_2236 +1.0 6.3 UDP-glucose 6-dehydrogenase (RefSeq) compare
Sama_3004 +1.0 5.4 cAMP-regulatory protein (RefSeq) compare
Sama_2778 +1.0 4.7 hypothetical protein (RefSeq) compare
Sama_3622 +1.0 7.5 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Sama_3144 +1.0 1.2 hypothetical protein (RefSeq) compare
Sama_0370 +1.0 8.2 prepilin-type cleavage/methylation (RefSeq) compare
Sama_2931 +1.0 4.6 hypothetical protein (RefSeq) compare
Sama_1495 +0.9 5.8 acetate kinase (RefSeq) compare
Sama_1270 +0.9 3.8 hypothetical protein (RefSeq) compare
Sama_1704 +0.9 5.7 alpha/beta fold family hydrolase (RefSeq) compare
Sama_1816 +0.9 4.6 TetR family transcriptional regulator (RefSeq) compare
Sama_2083 +0.9 5.5 hypothetical protein (RefSeq) compare
Sama_2166 +0.9 1.5 hypothetical protein (RefSeq) compare
Sama_0546 +0.9 6.7 HesA/MoeB/ThiF family protein (RefSeq) compare
Sama_2844 +0.9 3.7 hypothetical protein (RefSeq) compare
Sama_3218 +0.9 7.1 LysR family transcriptional regulator (RefSeq) compare
Sama_0179 +0.9 5.5 general secretion pathway protein N (RefSeq) compare
Sama_0951 +0.9 4.6 GreA/GreB family elongation factor (RefSeq) compare
Sama_2333 +0.9 4.2 hypothetical protein (RefSeq) compare
Sama_0808 +0.9 1.6 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_0878 +0.8 2.8 GTP-binding protein LepA (RefSeq) compare
Sama_1015 nrdR +0.8 3.0 transcriptional regulator NrdR (RefSeq) compare
Sama_0112 +0.8 6.8 glycosyl transferase, group 2 family protein (RefSeq) compare
Sama_0956 +0.8 7.2 phosphoglucosamine mutase (RefSeq) compare
Sama_2282 flhF +0.8 5.4 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_2012 +0.8 5.4 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_1906 +0.8 6.2 HlyD family-like protein (RefSeq) compare
Sama_3047 +0.8 5.2 ADP-ribose diphosphatase (RefSeq) compare
Sama_1325 +0.8 5.2 L-serine ammonia-lyase (RefSeq) compare
Sama_2190 secF +0.8 1.7 preprotein translocase subunit SecF (RefSeq) compare
Sama_0106 +0.8 6.2 hypothetical protein (RefSeq) compare
Sama_0449 +0.8 6.7 regulatory protein CsrD (RefSeq) compare
Sama_1722 ansA +0.8 2.7 cytoplasmic asparaginase I (RefSeq) compare
Sama_3127 +0.8 3.6 hypothetical protein (RefSeq) compare
Sama_2557 +0.8 3.0 putative nucleotide-binding protein (RefSeq) compare
Sama_2840 pntA +0.8 6.0 NAD(P) transhydrogenase subunit alpha (RefSeq) compare
Sama_2777 +0.8 5.3 aminotransferase, class V (RefSeq) compare
Sama_3623 +0.7 5.5 putative chorismate--pyruvate lyase (RefSeq) compare
Sama_2289 fliN +0.7 2.0 flagellar motor switch protein (RefSeq) compare
Sama_2563 +0.7 4.0 hypothetical protein (RefSeq) compare
Sama_1905 +0.7 5.9 AcrB/AcrD/AcrF family protein (RefSeq) compare
Sama_1974 +0.7 3.2 Cytidine deaminase (EC 3.5.4.5) (from data) compare
Sama_0109 +0.7 6.3 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_0118 +0.7 4.1 hypothetical protein (RefSeq) compare
Sama_0493 +0.7 3.0 transcriptional regulator (RefSeq) compare
Sama_0396 zntR +0.7 2.6 zinc-responsive transcriptional regulator (RefSeq) compare
Sama_2564 +0.7 4.2 hypothetical protein (RefSeq) compare
Sama_2013 +0.7 2.0 hypothetical protein (RefSeq) compare
Sama_2331 +0.7 3.7 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_0367 +0.7 1.8 prepilin peptidase (RefSeq) compare
Sama_1884 +0.7 3.8 hydroxyacylglutathione hydrolase (RefSeq) compare
Sama_1452 +0.7 3.1 hypothetical protein (RefSeq) compare
Sama_2156 +0.7 2.4 hypothetical protein (RefSeq) compare
Sama_0544 +0.7 5.9 outer membrane porin, putative (RefSeq) compare
Sama_R0014 +0.7 1.1 16S ribosomal RNA (RefSeq) compare
Sama_0410 +0.7 5.6 ornithine decarboxylase (RefSeq) compare
Sama_2642 +0.7 5.5 polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) compare
Sama_2191 secD +0.7 2.6 preprotein translocase subunit SecD (RefSeq) compare
Sama_0168 +0.6 2.2 general secretion pathway protein C (RefSeq) compare
Sama_2307 +0.6 4.1 flagellin-like protein (RefSeq) compare
Sama_1804 +0.6 2.9 hypothetical protein (RefSeq) compare
Sama_2265 +0.6 3.9 transcriptional activator rfaH, putative (RefSeq) compare
Sama_0970 +0.6 4.6 TatD-related deoxyribonuclease (RefSeq) compare
Sama_1349 +0.6 1.6 hypothetical protein (RefSeq) compare
Sama_2587 +0.6 1.8 rRNA large subunit methyltransferase (RefSeq) compare
Sama_2571 +0.6 4.4 GTP-dependent nucleic acid-binding protein EngD (RefSeq) compare
Sama_1959 +0.6 2.1 hypothetical protein (RefSeq) compare
Sama_3162 +0.6 3.9 response regulator receiver protein (RefSeq) compare
Sama_1286 +0.6 2.0 hypothetical protein (RefSeq) compare
Sama_0597 +0.6 2.9 hypothetical protein (RefSeq) compare
Sama_1132 +0.6 2.4 flavodoxin (RefSeq) compare
Sama_0781 +0.6 4.8 sugar fermentation stimulation protein A (RefSeq) compare
Sama_3528 +0.6 3.2 molybdenum cofactor biosynthesis protein E (RefSeq) compare
Sama_0334 +0.6 5.3 tetratricopeptide TPR_2 (RefSeq) compare
Sama_2322 +0.6 2.0 putative anti-sigma-28 factor, FlgM (RefSeq) compare
Sama_2119 +0.6 4.0 putative periplasmic protease (RefSeq) compare
Sama_2081 grxA +0.6 3.2 glutaredoxin 1 (RefSeq) compare
Sama_1453 +0.6 3.7 transporter, putative (RefSeq) compare
Sama_3538 +0.6 2.5 hypothetical protein (RefSeq) compare
Sama_3094 +0.6 2.1 hypothetical protein (RefSeq) compare
Sama_2520 +0.6 4.7 putative transcriptional regulator (RefSeq) compare
Sama_3010 +0.6 4.9 Arginine N-succinyltransferase (EC 2.3.1.109) (from data) compare
Sama_3024 +0.6 2.8 GTP-binding protein HflX (RefSeq) compare
Sama_2767 +0.6 1.6 hypothetical protein (RefSeq) compare
Sama_2310 flgJ +0.6 1.9 flagellar rod assembly protein/muramidase FlgJ (RefSeq) compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Sodium D,L-Lactate in Shewanella amazonensis SB2B

For carbon source Sodium D,L-Lactate across organisms