Experiment set2H21 for Pseudomonas stutzeri RCH2

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -6.0 -5.9 methionine biosynthesis protein MetW compare
Psest_3648 -5.8 -6.8 anthranilate phosphoribosyltransferase compare
Psest_0508 -5.4 -10.3 gamma-glutamyl phosphate reductase compare
Psest_3862 -5.3 -18.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0153 -5.2 -15.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2584 -5.0 -7.6 Phosphoribosylanthranilate isomerase compare
Psest_3650 -4.9 -12.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3317 -4.9 -7.5 Phosphotransferase System HPr (HPr) Family compare
Psest_0062 -4.9 -9.3 tryptophan synthase, alpha subunit compare
Psest_3647 -4.8 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_3384 -4.8 -11.2 glutamate 5-kinase compare
Psest_3864 -4.8 -17.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1772 -4.8 -7.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -4.8 -9.1 amidophosphoribosyltransferase compare
Psest_3944 -4.7 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3649 -4.6 -9.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2589 -4.6 -15.3 3-isopropylmalate dehydrogenase compare
Psest_2578 -4.5 -16.9 O-succinylhomoserine sulfhydrylase compare
Psest_0152 -4.5 -6.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3931 -4.4 -7.2 Signal transduction histidine kinase, nitrogen specific compare
Psest_0155 -4.3 -10.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -4.3 -15.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0952 -4.2 -4.9 Uncharacterized conserved protein compare
Psest_2650 -4.2 -5.0 hypothetical protein compare
Psest_3710 -4.1 -16.8 glutamate synthase small subunit family protein, proteobacterial compare
Psest_0953 -4.0 -12.5 iron-sulfur cluster-binding protein compare
Psest_0326 -4.0 -15.1 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1474 -4.0 -8.1 phosphoribosylaminoimidazole synthetase compare
Psest_3932 -4.0 -5.4 nitrogen regulation protein NR(I) compare
Psest_3298 -4.0 -13.4 histidinol dehydrogenase compare
Psest_3711 -4.0 -15.6 Glutamate synthase domain 2 compare
Psest_0325 -4.0 -19.1 Putative threonine efflux protein compare
Psest_3818 -4.0 -8.9 endoribonuclease L-PSP, putative compare
Psest_1636 -3.9 -6.5 putative transporter, required for glycine utilization (from data) conserved
Psest_1013 -3.9 -4.6 phosphoribosylamine--glycine ligase compare
Psest_2088 -3.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0063 -3.8 -8.8 tryptophan synthase, beta subunit compare
Psest_0280 -3.8 -15.5 homoserine O-acetyltransferase compare
Psest_3338 -3.7 -3.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3810 -3.6 -4.2 orotate phosphoribosyltransferase compare
Psest_1452 -3.6 -12.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0687 -3.5 -11.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2590 -3.5 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psest_0954 -3.4 -11.4 Fe-S oxidoreductase compare
Psest_1640 -3.4 -14.3 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1505 -3.4 -3.5 Organic radical activating enzymes compare
Psest_1999 -3.2 -2.4 pseudouridine synthase compare
Psest_0170 -3.2 -10.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_3123 -3.1 -6.1 dihydroorotase, homodimeric type compare
Psest_0313 -3.1 -6.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1947 -3.1 -3.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2591 -3.0 -3.2 3-isopropylmalate dehydratase, large subunit compare
Psest_3159 -2.9 -9.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1492 -2.9 -12.2 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3866 -2.9 -17.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0489 -2.8 -5.5 phosphoserine phosphatase SerB compare
Psest_0691 -2.8 -14.2 ribonuclease R compare
Psest_2988 -2.7 -8.5 aspartate kinase, monofunctional class compare
Psest_0498 -2.7 -2.4 ribosome small subunit-dependent GTPase A compare
Psest_1506 -2.6 -8.3 queuosine biosynthesis protein QueC compare
Psest_0066 -2.5 -2.9 Protein of unknown function (DUF3060). compare
Psest_1473 -2.5 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3129 -2.5 -3.0 tyrosine recombinase XerD compare
Psest_2714 -2.5 -3.1 7-cyano-7-deazaguanine reductase compare
Psest_3998 -2.5 -5.6 glutamate--cysteine ligase compare
Psest_1496 -2.4 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3943 -2.3 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1241 -2.3 -9.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3113 -2.3 -5.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_4191 -2.3 -4.5 Transcriptional regulator compare
Psest_3960 -2.3 -2.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2845 -2.3 -9.4 [Protein-PII] uridylyltransferase compare
Psest_0111 -2.2 -8.5 Glycine/D-amino acid oxidases (deaminating) conserved
Psest_2329 -2.1 -15.1 Transcriptional regulator compare
Psest_3565 -2.1 -2.2 hypothetical protein compare
Psest_0719 -2.0 -8.4 Uncharacterized protein conserved in bacteria compare
Psest_3092 -1.9 -2.5 ribonuclease III, bacterial compare
Psest_0359 -1.9 -2.5 Transcriptional regulators compare
Psest_1920 -1.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3767 -1.8 -5.0 tyrosine recombinase XerC compare
Psest_3766 -1.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_1037 -1.8 -2.7 acetolactate synthase, small subunit compare
Psest_1527 -1.7 -10.0 Na+/proline symporter compare
Psest_3297 -1.7 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4219 -1.7 -2.6 DNA polymerase I compare
Psest_0958 -1.7 -8.6 Oligoketide cyclase/lipid transport protein compare
Psest_2333 -1.6 -1.5 Protein of unknown function (DUF3359). compare
Psest_0999 -1.6 -3.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0398 -1.6 -6.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2719 -1.5 -5.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1295 -1.5 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2850 -1.5 -1.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1242 -1.5 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1180 -1.4 -5.4 hydroxypyruvate isomerase compare
Psest_1843 -1.4 -4.6 Uncharacterized Fe-S protein compare
Psest_2645 -1.4 -6.0 Transcriptional regulator compare
Psest_1837 -1.4 -6.7 Endoglucanase compare
Psest_1509 -1.4 -7.9 quinolinate synthetase complex, A subunit compare
Psest_1179 -1.4 -1.6 2-hydroxy-3-oxopropionate reductase compare
Psest_3777 -1.4 -2.5 diguanylate cyclase (GGDEF) domain compare
Psest_1486 -1.4 -3.2 hypothetical protein compare
Psest_3226 -1.3 -1.3 Predicted membrane protein compare
Psest_2911 -1.3 -2.4 Protein of unknown function (DUF2945). compare
Psest_3496 -1.3 -1.6 Predicted metal-binding protein compare
Psest_1814 -1.3 -9.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2864 -1.3 -3.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3664 -1.3 -2.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0281 -1.3 -6.6 Dynamin family. compare
Psest_0187 -1.3 -2.6 Metal-dependent hydrolase compare
Psest_1870 -1.2 -1.8 Transcriptional regulators compare
Psest_3339 -1.2 -4.2 Signal transduction histidine kinase compare
Psest_0998 -1.2 -3.2 poly(A) polymerase compare
Psest_1815 -1.2 -9.1 pseudaminic acid synthase compare
Psest_0718 -1.2 -3.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_0218 -1.2 -2.8 Acyl-CoA hydrolase compare
Psest_4243 -1.2 -1.9 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3749 -1.2 -7.9 Response regulator of the LytR/AlgR family compare
Psest_1518 -1.1 -2.5 tRNA_Ser_CGA compare
Psest_0411 -1.1 -7.6 biotin synthetase compare
Psest_0722 -1.1 -5.3 Predicted ATPase compare
Psest_2134 -1.1 -7.5 amino acid carrier protein compare
Psest_2671 -1.1 -2.1 Transcriptional regulator compare
Psest_3721 -1.1 -5.1 Malic enzyme compare
Psest_0212 -1.1 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_0673 -1.0 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0292 -1.0 -2.3 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2104 -1.0 -1.8 IscR-regulated protein YhgI compare
Psest_2809 -1.0 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0144 -1.0 -4.9 Fe-S cluster protector protein compare
Psest_3112 -1.0 -3.2 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0181 -1.0 -5.0 glycine cleavage system T protein compare
Psest_0412 -1.0 -5.9 8-amino-7-oxononanoate synthase compare
Psest_1691 -0.9 -2.9 aminodeoxychorismate lyase compare
Psest_0114 -0.9 -1.6 RNA polymerase sigma factor, sigma-70 family compare
Psest_0959 -0.9 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0415 -0.9 -3.0 dethiobiotin synthase compare
Psest_0243 -0.9 -0.6 hypothetical protein compare
Psest_0306 -0.9 -6.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3322 -0.9 -7.7 TIGR02099 family protein compare
Psest_2268 -0.9 -2.2 Alcohol dehydrogenase, class IV compare
Psest_4044 -0.9 -4.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2304 -0.9 -1.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1631 -0.9 -1.8 Uncharacterized conserved small protein compare
Psest_2079 -0.9 -6.9 Predicted permeases compare
Psest_0510 -0.9 -2.7 iojap-like ribosome-associated protein compare
Psest_3117 -0.9 -2.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4287 -0.9 -4.5 Predicted glutamine amidotransferases compare
Psest_0725 -0.9 -2.0 Negative regulator of beta-lactamase expression compare
Psest_4396 -0.9 -5.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_4363 -0.9 -4.9 ATPases involved in chromosome partitioning compare
Psest_2232 -0.9 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2786 -0.9 -1.2 Domain of unknown function (DUF3597). compare
Psest_2325 -0.8 -4.9 alpha-L-glutamate ligase-related protein compare
Psest_1056 -0.8 -1.3 2-isopropylmalate synthase, bacterial type compare
Psest_1204 -0.8 -1.5 Transcriptional regulators compare
Psest_0442 -0.8 -4.1 ATPases of the AAA+ class compare
Psest_2067 -0.8 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3115 -0.8 -4.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3047 -0.8 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1812 -0.8 -4.3 pseudaminic acid CMP-transferase compare
Psest_2946 -0.8 -2.8 septum site-determining protein MinD compare
Psest_2945 -0.8 -1.4 septum site-determining protein MinC compare
Psest_2935 -0.8 -2.1 hypothetical protein compare
Psest_0175 -0.8 -3.8 Xaa-Pro aminopeptidase compare
Psest_0015 -0.8 -1.7 Tetratricopeptide repeat. compare
Psest_0993 -0.8 -5.4 Glucose-6-phosphate isomerase compare
Psest_0951 -0.8 -4.5 FAD/FMN-containing dehydrogenases compare
Psest_1488 -0.8 -6.4 outer membrane porin, OprD family. compare
Psest_0558 -0.8 -0.8 urease, beta subunit compare
Psest_3934 -0.8 -3.0 rRNA methylase, putative, group 2 compare
Psest_0675 -0.8 -2.1 Predicted periplasmic lipoprotein compare
Psest_3750 -0.8 -4.6 Predicted signal transduction protein with a C-terminal ATPase domain compare
Psest_0532 -0.7 -3.6 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_2158 -0.7 -5.7 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2907 -0.7 -1.2 Protein of unknown function (DUF3618). compare
Psest_0277 -0.7 -1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3114 -0.7 -4.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2324 -0.7 -5.6 hypothetical protein compare
Psest_3718 -0.7 -3.2 Tfp pilus assembly protein PilN compare
Psest_3458 -0.7 -1.0 hypothetical protein compare
Psest_0349 -0.7 -2.9 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_0182 -0.7 -3.0 glycine cleavage system H protein compare
Psest_3474 -0.7 -1.9 Short-chain dehydrogenases of various substrate specificities compare
Psest_2810 -0.7 -3.4 5'/3'-nucleotidase SurE compare
Psest_3545 -0.7 -2.4 clan AA aspartic protease, TIGR02281 family compare
Psest_2339 -0.7 -4.0 transcription elongation factor GreB compare
Psest_3626 -0.7 -2.4 hypothetical protein compare
Psest_3178 -0.7 -2.5 formyltetrahydrofolate deformylase compare
Psest_1115 -0.7 -1.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1181 -0.7 -3.8 Glyoxylate carboligase (EC 4.1.1.47) (from data) compare
Psest_2027 -0.7 -5.0 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_2581 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1951 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3139 -0.7 -2.2 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_2114 -0.7 -3.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4393 -0.7 -3.3 Capsule polysaccharide export protein compare
Psest_3301 -0.7 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_0413 -0.7 -3.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3637 -0.7 -2.4 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_1293 -0.7 -1.2 VanZ like family. compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Glycine in Pseudomonas stutzeri RCH2

For nitrogen source Glycine across organisms