Experiment set2H20 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.9 -5.7 methionine biosynthesis protein MetW compare
Psest_3647 -5.7 -6.8 Indole-3-glycerol phosphate synthase compare
Psest_3650 -5.4 -8.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2578 -5.3 -13.8 O-succinylhomoserine sulfhydrylase compare
Psest_0508 -5.2 -9.9 gamma-glutamyl phosphate reductase compare
Psest_0280 -5.2 -15.9 homoserine O-acetyltransferase compare
Psest_3866 -5.2 -17.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2591 -5.1 -5.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -5.1 -8.4 anthranilate phosphoribosyltransferase compare
Psest_2584 -5.0 -7.7 Phosphoribosylanthranilate isomerase compare
Psest_0155 -4.9 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3384 -4.8 -10.7 glutamate 5-kinase compare
Psest_1474 -4.8 -3.3 phosphoribosylaminoimidazole synthetase compare
Psest_3299 -4.7 -14.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2579 -4.6 -8.3 amidophosphoribosyltransferase compare
Psest_2589 -4.6 -14.5 3-isopropylmalate dehydrogenase compare
Psest_4081 -4.6 -8.6 Glutaminase (EC 3.5.1.2) (from data) conserved
Psest_0152 -4.6 -7.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_1452 -4.4 -9.8 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0062 -4.4 -9.7 tryptophan synthase, alpha subunit compare
Psest_0325 -4.4 -18.4 Putative threonine efflux protein compare
Psest_0153 -4.2 -17.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3298 -4.1 -14.4 histidinol dehydrogenase compare
Psest_3810 -4.1 -2.8 orotate phosphoribosyltransferase compare
Psest_2590 -4.1 -2.6 3-isopropylmalate dehydratase, small subunit compare
Psest_3721 -4.1 -10.0 Malic enzyme compare
Psest_3864 -4.0 -18.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3649 -3.9 -10.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0687 -3.9 -11.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1473 -3.9 -10.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0954 -3.8 -12.8 Fe-S oxidoreductase compare
Psest_2088 -3.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0063 -3.7 -7.9 tryptophan synthase, beta subunit compare
Psest_2329 -3.7 -19.0 Transcriptional regulator compare
Psest_1013 -3.7 -5.6 phosphoribosylamine--glycine ligase compare
Psest_0489 -3.6 -4.9 phosphoserine phosphatase SerB compare
Psest_3159 -3.6 -12.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0313 -3.6 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1037 -3.5 -5.4 acetolactate synthase, small subunit compare
Psest_3818 -3.5 -7.8 endoribonuclease L-PSP, putative compare
Psest_0170 -3.4 -9.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_1947 -3.3 -2.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0952 -3.2 -4.8 Uncharacterized conserved protein compare
Psest_1772 -3.2 -8.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1295 -3.2 -10.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3944 -3.0 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3123 -2.9 -6.3 dihydroorotase, homodimeric type compare
Psest_0953 -2.8 -11.6 iron-sulfur cluster-binding protein compare
Psest_3226 -2.8 -2.1 Predicted membrane protein compare
Psest_3943 -2.6 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2090 -2.6 -4.7 Protein of unknown function (DUF2970). compare
Psest_3998 -2.3 -5.1 glutamate--cysteine ligase compare
Psest_0326 -2.2 -7.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3710 -2.1 -13.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3711 -2.0 -14.1 Glutamate synthase domain 2 compare
Psest_1640 -2.0 -12.3 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0449 -1.9 -11.2 Glutamine synthetase adenylyltransferase compare
Psest_0355 -1.8 -1.9 Glycine cleavage system regulatory protein compare
Psest_0411 -1.8 -10.6 biotin synthetase compare
Psest_1704 -1.7 -2.0 Dehydrogenases (flavoproteins) compare
Psest_2862 -1.7 -10.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3932 -1.7 -4.5 nitrogen regulation protein NR(I) compare
Psest_4307 -1.7 -3.8 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3297 -1.6 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3910 -1.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1679 -1.6 -2.5 ribonuclease, Rne/Rng family compare
Psest_0164 -1.6 -1.5 Glutaredoxin, GrxC family compare
Psest_2845 -1.6 -9.3 [Protein-PII] uridylyltransferase compare
Psest_2333 -1.6 -1.7 Protein of unknown function (DUF3359). compare
Psest_4310 -1.6 -2.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1837 -1.6 -8.7 Endoglucanase compare
Psest_0097 -1.5 -1.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0284 -1.5 -10.5 pyridoxal phosphate enzyme, YggS family compare
Psest_0955 -1.4 -4.9 D,L-lactate:H+ symporter (from data) compare
Psest_1686 -1.4 -6.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0182 -1.4 -6.7 glycine cleavage system H protein compare
Psest_2714 -1.4 -2.7 7-cyano-7-deazaguanine reductase compare
Psest_0415 -1.4 -3.7 dethiobiotin synthase compare
Psest_3931 -1.4 -4.6 Signal transduction histidine kinase, nitrogen specific compare
Psest_1870 -1.4 -2.4 Transcriptional regulators compare
Psest_0281 -1.3 -7.1 Dynamin family. compare
Psest_2719 -1.3 -5.4 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1496 -1.3 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_0094 -1.3 -1.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0951 -1.2 -7.9 FAD/FMN-containing dehydrogenases compare
Psest_0413 -1.2 -5.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4103 -1.2 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_2037 -1.2 -5.1 uroporphyrin-III C-methyltransferase compare
Psest_0999 -1.2 -3.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3496 -1.2 -1.6 Predicted metal-binding protein compare
Psest_0306 -1.2 -9.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3449 -1.2 -1.2 DJ-1 family protein compare
Psest_0212 -1.1 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_2863 -1.1 -4.0 Transcriptional regulator compare
Psest_1277 -1.1 -7.8 2-isopropylmalate synthase, yeast type compare
Psest_0537 -1.1 -1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3645 -1.1 -7.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0718 -1.1 -3.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_1292 -1.1 -5.8 monothiol glutaredoxin, Grx4 family compare
Psest_1509 -1.1 -6.7 quinolinate synthetase complex, A subunit compare
Psest_0412 -1.1 -6.9 8-amino-7-oxononanoate synthase compare
Psest_3453 -1.0 -2.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3008 -1.0 -2.3 cobyric acid synthase CobQ compare
Psest_0103 -1.0 -2.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_4363 -1.0 -5.4 ATPases involved in chromosome partitioning compare
Psest_3161 -1.0 -6.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3573 -0.9 -3.2 dTDP-4-dehydrorhamnose reductase compare
Psest_0292 -0.9 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_4191 -0.9 -2.3 Transcriptional regulator compare
Psest_3338 -0.9 -1.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0445 -0.9 -6.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2323 -0.9 -6.8 Uncharacterized protein conserved in archaea compare
Psest_2946 -0.9 -3.5 septum site-determining protein MinD compare
Psest_0154 -0.9 -3.1 Uncharacterized conserved protein compare
Psest_0857 -0.8 -1.1 Membrane transporters of cations and cationic drugs compare
Psest_3322 -0.8 -7.4 TIGR02099 family protein compare
Psest_1012 -0.8 -3.6 Signal transduction histidine kinase compare
Psest_0209 -0.8 -1.0 membrane protein AbrB duplication compare
Psest_3177 -0.8 -1.6 hypothetical protein compare
Psest_1505 -0.8 -2.0 Organic radical activating enzymes compare
Psest_3146 -0.8 -1.2 hypothetical protein compare
Psest_2585 -0.8 -1.0 pseudouridylate synthase I compare
Psest_0259 -0.8 -1.7 cell division ATP-binding protein FtsE compare
Psest_3163 -0.8 -5.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain conserved
Psest_3550 -0.8 -1.5 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2531 -0.8 -6.5 cytochrome c oxidase accessory protein FixG compare
Psest_2324 -0.8 -6.5 hypothetical protein compare
Psest_3162 -0.8 -5.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3129 -0.8 -1.4 tyrosine recombinase XerD compare
Psest_1814 -0.8 -6.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0334 -0.8 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1115 -0.8 -1.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3767 -0.8 -2.9 tyrosine recombinase XerC compare
Psest_2325 -0.8 -5.0 alpha-L-glutamate ligase-related protein compare
Psest_1486 -0.8 -2.5 hypothetical protein compare
Psest_0697 -0.8 -2.5 ribosomal protein L9 compare
Psest_4098 -0.8 -2.0 Superfamily I DNA and RNA helicases compare
Psest_2983 -0.7 -2.4 hypothetical protein compare
Psest_1631 -0.7 -1.3 Uncharacterized conserved small protein compare
Psest_3458 -0.7 -1.1 hypothetical protein compare
Psest_2911 -0.7 -1.7 Protein of unknown function (DUF2945). compare
Psest_2864 -0.7 -2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1815 -0.7 -5.6 pseudaminic acid synthase compare
Psest_2693 -0.7 -2.6 muconolactone delta-isomerase compare
Psest_2976 -0.7 -2.0 hypothetical protein compare
Psest_2104 -0.7 -1.9 IscR-regulated protein YhgI compare
Psest_2650 -0.7 -2.0 hypothetical protein compare
Psest_4070 -0.7 -4.8 PAS domain S-box compare
Psest_3303 -0.7 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3178 -0.7 -2.7 formyltetrahydrofolate deformylase compare
Psest_3419 -0.7 -4.5 Predicted transcriptional regulators compare
Psest_3306 -0.7 -2.9 conserved hypothetical integral membrane protein compare
Psest_1522 -0.7 -2.4 hypothetical protein compare
Psest_2967 -0.7 -2.5 flagellar basal-body rod protein FlgC compare
Psest_0771 -0.7 -4.7 Acyl-CoA hydrolase compare
Psest_0533 -0.7 -3.1 Sel1 repeat. compare
Psest_1724 -0.7 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0414 -0.7 -2.7 biotin biosynthesis protein BioC compare
Psest_2645 -0.7 -3.6 Transcriptional regulator compare
Psest_4084 -0.7 -5.3 oxaloacetate decarboxylase alpha subunit compare
Psest_2411 -0.7 -3.6 PAS domain S-box compare
Psest_0501 -0.7 -2.0 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_1750 -0.6 -1.5 Protein of unknown function (DUF2802). compare
Psest_2637 -0.6 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0708 -0.6 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_2809 -0.6 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1639 -0.6 -2.5 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_1306 -0.6 -1.5 hypothetical protein compare
Psest_2872 -0.6 -1.4 protein RecA compare
Psest_1284 -0.6 -2.6 exodeoxyribonuclease VII, large subunit compare
Psest_0520 -0.6 -0.7 hypothetical protein compare
Psest_0959 -0.6 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3304 -0.6 -3.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4303 -0.6 -0.7 HEAT repeat. compare
Psest_0778 -0.6 -1.6 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1762 -0.6 -1.5 cytochrome c-type biogenesis protein CcmI compare
Psest_0592 -0.6 -2.0 hypothetical protein compare
Psest_2268 -0.6 -2.3 Alcohol dehydrogenase, class IV compare
Psest_4085 -0.6 -4.5 Biotin carboxylase compare
Psest_3307 -0.6 -3.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1506 -0.6 -2.9 queuosine biosynthesis protein QueC compare
Psest_1843 -0.6 -1.6 Uncharacterized Fe-S protein compare
Psest_1492 -0.6 -4.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0691 -0.6 -4.4 ribonuclease R compare
Psest_1510 -0.6 -2.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2316 -0.6 -4.6 phosphoenolpyruvate synthase compare
Psest_1241 -0.6 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0644 -0.6 -1.6 siderophore ferric iron reductase, AHA_1954 family compare
Psest_4247 -0.6 -1.8 Serine/threonine protein phosphatase compare
Psest_1480 -0.6 -2.1 arsenate reductase (glutaredoxin) compare
Psest_2953 -0.6 -1.8 Histone acetyltransferase compare
Psest_1819 -0.6 -5.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_3777 -0.6 -1.4 diguanylate cyclase (GGDEF) domain compare
Psest_3626 -0.6 -2.4 hypothetical protein compare
Psest_1809 -0.6 -4.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_4067 -0.5 -2.1 Predicted membrane protein compare
Psest_1813 -0.5 -4.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1031 -0.5 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2764 -0.5 -0.7 hypothetical protein compare
Psest_3490 -0.5 -1.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Glutamine in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamine across organisms