Experiment set2H20 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_4078 +3.8 12.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3700 +2.7 1.5 hypothetical protein compare
Psest_4076 +2.1 7.1 hypothetical protein compare
Psest_2775 +2.1 10.9 Glycerol-3-phosphate dehydrogenase compare
Psest_1923 +2.0 9.0 adhesin-associated BNR repeat protein (from data) compare
Psest_1924 +1.8 16.0 adhesin-associated MmpL efflux pump (from data) compare
Psest_0538 +1.7 16.9 Signal transduction histidine kinase compare
Psest_1635 +1.7 15.4 Signal transduction histidine kinase compare
Psest_0078 +1.6 2.1 hypothetical protein compare
Psest_2260 +1.5 14.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3100 +1.5 13.7 RNA polymerase sigma factor RpoE compare
Psest_3296 +1.5 10.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4316 +1.5 6.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3546 +1.5 2.3 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1122 +1.4 12.9 putative adhesin (DUF1302) (from data) compare
Psest_4315 +1.3 4.0 ABC-type metal ion transport system, permease component compare
Psest_0417 +1.3 4.6 Acyl-CoA dehydrogenases compare
Psest_3447 +1.2 1.7 Uncharacterized MobA-related protein compare
Psest_3735 +1.2 3.2 uncharacterized domain 1 compare
Psest_1540 +1.2 2.5 biotin-dependent carboxylase uncharacterized domain compare
Psest_0401 +1.2 1.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1884 +1.2 3.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3884 +1.1 1.5 Signal transduction histidine kinase compare
Psest_2025 +1.1 2.3 cold shock domain protein CspD compare
Psest_1840 +1.1 10.5 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2066 +1.1 5.1 ABC-type uncharacterized transport system, permease component compare
Psest_2383 +1.1 7.9 Predicted transcriptional regulators compare
Psest_1574 +1.1 3.6 phenazine biosynthesis protein PhzF family compare
Psest_1567 +1.1 5.0 Transcriptional regulator compare
Psest_4273 +1.1 8.1 Lysophospholipase compare
Psest_1725 +1.1 7.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3372 +1.1 7.8 Tfp pilus assembly protein PilW compare
Psest_0969 +1.0 3.5 transcription elongation factor GreA compare
Psest_4170 +1.0 2.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0192 +1.0 6.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0298 +1.0 5.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3217 +1.0 9.7 PAS domain S-box compare
Psest_3370 +1.0 6.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0759 +1.0 1.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0031 +1.0 1.4 Uncharacterized conserved protein compare
Psest_0108 +1.0 6.2 malonate decarboxylase, epsilon subunit compare
Psest_1804 +1.0 5.0 Superfamily II DNA and RNA helicases compare
Psest_3373 +1.0 6.1 Tfp pilus assembly protein PilX compare
Psest_3216 +0.9 9.1 diguanylate cyclase (GGDEF) domain compare
Psest_0662 +0.9 2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0717 +0.9 8.4 Protein of unknown function (DUF1631). compare
Psest_3374 +0.9 6.8 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_2102 +0.9 8.4 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_4314 +0.9 4.4 ABC-type metal ion transport system, ATPase component compare
Psest_3371 +0.9 6.0 type IV pilus modification protein PilV compare
Psest_1601 +0.9 1.9 Signal transduction histidine kinase compare
Psest_1663 +0.9 2.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2894 +0.9 3.0 addiction module antidote protein, HigA family compare
Psest_3088 +0.9 3.5 Protein of unknown function (DUF2905). compare
Psest_1625 +0.9 1.9 hypothetical protein compare
Psest_3670 +0.9 7.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_1082 +0.9 2.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2887 +0.9 3.1 Uncharacterized protein conserved in bacteria compare
Psest_2624 +0.9 2.1 hypothetical protein compare
Psest_4008 +0.9 7.0 PAS domain S-box compare
Psest_3092 +0.9 2.6 ribonuclease III, bacterial compare
Psest_2766 +0.8 1.6 hypothetical protein compare
Psest_0575 +0.8 1.1 HrpA-like helicases compare
Psest_2626 +0.8 2.6 Flp pilus assembly protein CpaB compare
Psest_1677 +0.8 2.0 Protein-tyrosine-phosphatase compare
Psest_4293 +0.8 6.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0186 +0.8 3.7 Protein-disulfide isomerase compare
Psest_1733 +0.8 2.4 flagellar biosynthetic protein FliQ compare
Psest_3841 +0.8 5.4 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3014 +0.8 1.3 cob(I)alamin adenosyltransferase compare
Psest_3963 +0.8 6.7 PAS domain S-box compare
Psest_4221 +0.8 3.8 homoserine kinase, Neisseria type compare
Psest_2229 +0.8 2.6 Uncharacterized protein conserved in bacteria compare
Psest_4004 +0.8 2.8 Uncharacterized conserved protein compare
Psest_4075 +0.8 5.2 symporter for L-glutamate, L-glutamine, and L-proline (from data) compare
Psest_3377 +0.7 1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3478 +0.7 1.5 Cytochrome B561 compare
Psest_2771 +0.7 2.6 Predicted membrane protein compare
Psest_1912 +0.7 3.1 Protein of unknown function (DUF1260). compare
Psest_3399 +0.7 1.8 Uncharacterized protein conserved in bacteria compare
Psest_4142 +0.7 1.2 hypothetical protein compare
Psest_0988 +0.7 2.0 Protein of unknown function (DUF2845). compare
Psest_3938 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Psest_1167 +0.7 1.2 hypothetical protein compare
Psest_1053 +0.7 2.1 hypothetical protein compare
Psest_2748 +0.7 1.8 Transcriptional regulator compare
Psest_2390 +0.7 4.2 hypothetical protein compare
Psest_4113 +0.7 3.9 hypothetical protein compare
Psest_2360 +0.7 2.3 Uncharacterized protein, putative amidase compare
Psest_3756 +0.7 3.1 hypothetical protein compare
Psest_3351 +0.7 4.8 peptide chain release factor 3 compare
Psest_0020 +0.7 2.4 K+ transport systems, NAD-binding component compare
Psest_3473 +0.7 3.0 hypothetical protein compare
Psest_0750 +0.7 2.6 hypothetical protein compare
Psest_0693 +0.7 6.4 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3189 +0.7 3.4 hypothetical protein compare
Psest_1619 +0.7 3.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_3354 +0.7 3.6 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_1979 +0.7 3.2 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_2944 +0.7 2.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2136 +0.7 4.3 Predicted homoserine dehydrogenase compare
Psest_1904 +0.7 2.2 Arabinose efflux permease compare
Psest_4382 +0.7 6.1 hypothetical protein compare
Psest_0536 +0.7 2.9 thiamine-phosphate pyrophosphorylase compare
Psest_2950 +0.6 3.2 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_1660 +0.6 2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3086 +0.6 3.8 hypothetical protein compare
Psest_4163 +0.6 2.1 hypothetical protein compare
Psest_0842 +0.6 1.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1187 +0.6 4.1 exodeoxyribonuclease III compare
Psest_1940 +0.6 2.2 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3877 +0.6 4.1 Predicted membrane protein compare
Psest_1366 +0.6 1.5 hypothetical protein compare
Psest_3039 +0.6 1.3 periplasmic nitrate reductase, NapE protein compare
Psest_2892 +0.6 2.4 Transcriptional regulator compare
Psest_0640 +0.6 2.6 Uncharacterized conserved protein compare
Psest_3997 +0.6 3.7 uncharacterized domain 1 compare
Psest_3762 +0.6 2.3 iron donor protein CyaY compare
Psest_1065 +0.6 1.8 hypothetical protein compare
Psest_1161 +0.6 2.1 E3 Ubiquitin ligase. compare
Psest_3994 +0.6 4.2 Signal transduction histidine kinase compare
Psest_3749 +0.6 4.8 Response regulator of the LytR/AlgR family compare
Psest_0227 +0.6 1.4 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0367 +0.6 0.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2420 +0.6 3.5 Transcriptional regulator compare
Psest_0796 +0.6 1.9 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_4335 +0.6 2.5 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2120 +0.6 1.5 Transcriptional regulator compare
Psest_3363 +0.6 2.7 hypothetical protein compare
Psest_1185 +0.6 1.5 heavy metal response regulator compare
Psest_3936 +0.6 1.9 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2357 +0.6 1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_0013 +0.6 4.0 Lauroyl/myristoyl acyltransferase compare
Psest_0446 +0.6 2.9 hypothetical protein compare
Psest_2405 +0.6 1.2 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3064 +0.6 1.1 hypothetical protein compare
Psest_4164 +0.6 2.5 flagellar biosynthetic protein FliS compare
Psest_4051 +0.6 2.1 molybdenum-pterin binding domain compare
Psest_2988 +0.6 3.0 aspartate kinase, monofunctional class compare
Psest_0511 +0.6 1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2396 +0.6 2.5 Predicted transcriptional regulators compare
Psest_3331 +0.6 2.2 rare lipoprotein A compare
Psest_3838 +0.6 0.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0299 +0.6 2.3 Chemotaxis signal transduction protein compare
Psest_2123 +0.5 1.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2883 +0.5 4.5 Predicted membrane protein involved in D-alanine export compare
Psest_3082 +0.5 3.2 Predicted secreted protein compare
Psest_0652 +0.5 1.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0402 +0.5 1.5 glycosyltransferase, MGT family compare
Psest_3908 +0.5 0.9 Cytochrome c553 compare
Psest_4405 +0.5 1.5 hypothetical protein compare
Psest_0734 +0.5 1.4 RND family efflux transporter, MFP subunit compare
Psest_3803 +0.5 1.3 DNA repair protein radc compare
Psest_0400 +0.5 2.0 Geranylgeranyl pyrophosphate synthase compare
Psest_1634 +0.5 3.5 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain compare
Psest_3692 +0.5 1.7 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3554 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4274 +0.5 2.4 hypothetical protein compare
Psest_3662 +0.5 1.3 DnaJ-domain-containing proteins 1 compare
Psest_4168 +0.5 2.0 Flagellar FliJ protein. compare
Psest_4161 +0.5 2.2 Flagellar basal body-associated protein compare
Psest_2565 +0.5 1.7 Transcriptional regulator compare
Psest_1182 +0.5 2.8 Transcriptional regulator compare
Psest_3324 +0.5 3.4 MAF protein compare
Psest_0571 +0.5 2.9 Transcriptional regulators compare
Psest_3824 +0.5 1.7 Predicted membrane protein compare
Psest_4259 +0.5 2.9 Multidrug resistance efflux pump compare
Psest_1939 +0.5 3.1 Tetratricopeptide repeat. compare
Psest_1183 +0.5 1.9 hydroxyisourate hydrolase compare
Psest_0161 +0.5 1.8 Membrane-bound metallopeptidase compare
Psest_1731 +0.5 1.7 flagellar biosynthetic protein FliO compare
Psest_3237 +0.5 1.5 hypothetical protein compare
Psest_0035 +0.5 2.4 hypothetical protein compare
Psest_1149 +0.5 1.9 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0077 +0.5 2.2 luciferase family oxidoreductase, group 1 compare
Psest_2889 +0.5 4.2 Predicted flavoprotein involved in K+ transport compare
Psest_3083 +0.5 2.9 hypothetical protein compare
Psest_2358 +0.5 1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2395 +0.5 2.3 Uncharacterized conserved protein compare
Psest_2288 +0.5 2.7 trigger factor compare
Psest_2886 +0.5 3.9 hypothetical protein compare
Psest_4007 +0.5 3.2 Uncharacterized protein conserved in bacteria compare
Psest_2261 +0.5 2.4 hypothetical protein compare
Psest_1911 +0.5 3.5 spermidine synthase compare
Psest_1081 +0.5 2.8 hypothetical protein compare
Psest_2757 +0.5 0.8 hypothetical protein compare
Psest_1792 +0.5 2.6 RND family efflux transporter, MFP subunit compare
Psest_2139 +0.5 3.7 Cation/multidrug efflux pump compare
Psest_3557 +0.5 2.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1159 +0.5 3.5 Uncharacterized iron-regulated protein compare
Psest_1071 +0.5 2.2 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains compare
Psest_2489 +0.5 3.4 branched-chain amino acid uptake carrier compare
Psest_0260 +0.5 0.7 Cell division protein compare
Psest_2238 +0.5 1.7 hypothetical protein compare
Psest_3080 +0.5 1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_3522 +0.5 1.9 3-hydroxybutyrate dehydrogenase compare
Psest_1720 +0.5 3.4 flagellar motor switch protein FliG compare
Psest_0318 +0.5 3.2 NAD-dependent DNA ligase (contains BRCT domain type II) compare
Psest_0855 +0.5 1.9 NAD-dependent aldehyde dehydrogenases compare
Psest_1597 +0.5 2.3 Protein of unknown function (DUF2933). compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Glutamine in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamine across organisms