Experiment set2H2 for Shewanella amazonensis SB2B

Compare to:

LB flask, timecourse 1, timepoint 1

200 most detrimental genes:

  gene name fitness t score description  
Sama_1343 +1.1 2.5 hypothetical protein (RefSeq) compare
Sama_1777 +1.0 2.5 hypothetical protein (RefSeq) compare
Sama_2246 +0.9 2.3 methionyl-tRNA formyltransferase (RefSeq) compare
Sama_2241 +0.8 1.7 hypothetical protein (RefSeq) compare
Sama_1672 +0.7 2.3 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_0833 +0.7 1.5 major outer membrane lipoprotein, putative (RefSeq) compare
Sama_1802 +0.7 2.4 hypothetical protein (RefSeq) compare
Sama_2587 +0.6 2.0 rRNA large subunit methyltransferase (RefSeq) compare
Sama_2058 +0.6 1.0 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_1457 +0.6 1.9 nitroreductase family protein (RefSeq) compare
Sama_1683 +0.6 2.2 ApbE family lipoprotein (RefSeq) compare
Sama_1407 +0.5 1.9 ACT domain-containing protein (RefSeq) compare
Sama_1938 +0.5 1.2 hypothetical protein (RefSeq) compare
Sama_0678 +0.5 2.1 hypothetical protein (RefSeq) compare
Sama_1308 +0.5 1.6 hypothetical protein (RefSeq) compare
Sama_1617 +0.5 2.2 asparaginase family protein (RefSeq) compare
Sama_1618 +0.5 2.3 CBS domain-containing protein (RefSeq) compare
Sama_2125 +0.5 1.0 putative transcriptional regulator (RefSeq) compare
Sama_2195 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_2013 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_2558 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_1352 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_3195 +0.4 0.9 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Sama_0390 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_2791 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1959 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_2553 +0.4 2.0 putative lipoprotein (RefSeq) compare
Sama_1128 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2399 +0.4 1.6 response regulator receiver protein (RefSeq) compare
Sama_1007 +0.4 1.7 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Sama_3566 +0.4 1.7 MarR family transcriptional regulator (RefSeq) compare
Sama_1889 +0.4 0.6 hypothetical protein (RefSeq) compare
Sama_1680 +0.4 2.0 thioredoxin family protein (RefSeq) compare
Sama_1123 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_1345 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_1041 surE +0.4 1.8 stationary phase survival protein SurE (RefSeq) compare
Sama_2084 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1560 +0.4 1.9 M24/M37 family peptidase (RefSeq) compare
Sama_1816 +0.4 1.9 TetR family transcriptional regulator (RefSeq) compare
Sama_1228 +0.4 0.9 peptidyl-prolyl cis-trans isomerase D (RefSeq) compare
Sama_1630 +0.4 1.9 LysR family transcriptional regulator (RefSeq) compare
Sama_R0014 +0.4 0.7 16S ribosomal RNA (RefSeq) compare
Sama_1861 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_2070 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2263 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_1873 +0.3 1.9 response regulator receiver protein (RefSeq) compare
Sama_3316 +0.3 1.3 transcriptional antiterminator, Rof (RefSeq) compare
Sama_2259 +0.3 1.5 MviM protein (RefSeq) compare
Sama_1668 +0.3 1.5 GGDEF domain-containing protein (RefSeq) compare
Sama_3089 +0.3 2.0 ribosomal subunit interface protein (RefSeq) compare
Sama_2398 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_2068 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1945 hisH +0.3 1.3 imidazole glycerol phosphate synthase subunit HisH (RefSeq) compare
Sama_2165 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_0683 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_1043 +0.3 1.5 lipoprotein NlpD (RefSeq) compare
Sama_1461 +0.3 1.6 SM-20 domain-containing protein (RefSeq) compare
Sama_1413 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2130 +0.3 1.3 anthranilate synthase component II (RefSeq) compare
Sama_0633 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_2620 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2180 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_2322 +0.3 0.9 putative anti-sigma-28 factor, FlgM (RefSeq) compare
Sama_1823 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_3357 +0.3 1.3 putative lipoprotein (RefSeq) compare
Sama_0874 +0.3 0.9 RNA polymerase sigma factor RpoE (RefSeq) compare
Sama_1634 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_1595 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_1998 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_1348 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_2166 +0.3 0.7 hypothetical protein (RefSeq) compare
Sama_1056 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2316 flgD +0.3 1.6 flagellar basal body rod modification protein (RefSeq) compare
Sama_1930 minC +0.3 1.1 septum formation inhibitor (RefSeq) compare
Sama_3323 +0.3 0.9 hypothetical protein (RefSeq) compare
Sama_1558 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2751 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_2354 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2047 +0.3 1.6 uridine kinase (RefSeq) compare
Sama_3493 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1742 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_1826 +0.3 0.6 ExsB protein (RefSeq) compare
Sama_1996 +0.3 1.0 diacylglycerol kinase (RefSeq) compare
Sama_2134 trpA +0.3 1.5 tryptophan synthase subunit alpha (RefSeq) compare
Sama_1718 +0.3 1.4 response regulator receiver protein (RefSeq) compare
Sama_1611 +0.3 0.4 HU family DNA-binding protein (RefSeq) compare
Sama_1971 rrmA +0.3 1.4 23S rRNA methyltransferase A (RefSeq) compare
Sama_2726 +0.3 1.5 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) compare
Sama_1719 +0.3 1.0 zinc carboxypeptidase domain-containing protein (RefSeq) compare
Sama_1892 +0.3 1.4 putative sulfite oxidase subunit YedZ (RefSeq) compare
Sama_2303 +0.3 0.9 hypothetical protein (RefSeq) compare
Sama_0914 +0.3 1.9 OmpA/MotB (RefSeq) compare
Sama_1341 +0.3 1.0 alkylhydroperoxidase (RefSeq) compare
Sama_1785 +0.3 0.8 MerR family transcriptional regulator (RefSeq) compare
Sama_1782 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_1851 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_2975 +0.3 1.1 acetyltransferase (RefSeq) compare
Sama_1654 +0.3 0.9 hypothetical protein (RefSeq) compare
Sama_1378 +0.3 1.1 enoyl-CoA hydratase (RefSeq) compare
Sama_1449 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_1625 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2313 flgG +0.3 1.5 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2434 +0.3 0.8 exodeoxyribonuclease VII, small subunit (RefSeq) compare
Sama_3447 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1186 +0.3 1.5 Slt family transglycosylase (RefSeq) compare
Sama_1589 +0.3 1.7 adhesin-associated sorting protein (DUF1329) (from data) compare
Sama_1287 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_2946 +0.3 1.5 minor curlin subunit CsgB, putative (RefSeq) compare
Sama_1763 +0.3 0.7 hypothetical protein (RefSeq) compare
Sama_1158 +0.3 1.3 GGDEF family protein (RefSeq) compare
Sama_1089 +0.3 0.9 TetR family transcriptional regulator (RefSeq) compare
Sama_2034 +0.3 0.7 methyltransferase (RefSeq) compare
Sama_0928 +0.3 1.9 type IV pilus assembly protein PilV (RefSeq) compare
Sama_2626 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_2278 +0.2 1.4 putative chemotaxis phosphatase, CheZ (RefSeq) compare
Sama_1990 +0.2 1.2 sulphate transporter (RefSeq) compare
Sama_1746 +0.2 0.4 hypothetical protein (RefSeq) compare
Sama_1960 +0.2 0.9 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_3001 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_3096 +0.2 1.7 OmpA family protein (RefSeq) compare
Sama_2272 +0.2 0.7 purine-binding chemotaxis protein CheW (RefSeq) compare
Sama_1097 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2357 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_0412 +0.2 1.7 Uridine phosphorylase (EC 2.4.2.3) (from data) compare
Sama_1351 +0.2 1.3 beta-lactamase class C-like protein (RefSeq) compare
Sama_3476 +0.2 1.5 ribonuclease T2 family protein (RefSeq) compare
Sama_2172 +0.2 1.1 von Willebrand factor type A domain-containing protein (RefSeq) compare
Sama_1907 +0.2 1.2 lipoprotein-34 NlpB (RefSeq) compare
Sama_1636 +0.2 0.8 no description compare
Sama_1385 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_2338 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_1704 +0.2 1.3 alpha/beta fold family hydrolase (RefSeq) compare
Sama_0285 +0.2 1.1 nucleotidase (RefSeq) compare
Sama_1471 +0.2 1.1 membrane-fusion protein (RefSeq) compare
Sama_1051 +0.2 0.7 oxaloacetate decarboxylase, gamma subunit (RefSeq) compare
Sama_1693 +0.2 1.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq) compare
Sama_1015 nrdR +0.2 1.0 transcriptional regulator NrdR (RefSeq) compare
Sama_3144 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_1162 +0.2 1.3 GGDEF domain-containing protein (RefSeq) compare
Sama_3053 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_2450 +0.2 1.6 glucose-1-phosphate adenylyltransferase (RefSeq) compare
Sama_1752 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1897 +0.2 1.0 MoxR protein (RefSeq) compare
Sama_2433 +0.2 1.3 flagellar motor protein PomA (RefSeq) compare
Sama_2223 +0.2 0.6 UTP--glucose-1-phosphate uridylyltransferase (RefSeq) compare
Sama_2959 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_3121 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1867 +0.2 0.7 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Sama_1937 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_3584 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_1486 +0.2 0.8 ABC transporter, ATP-binding protein (RefSeq) compare
Sama_2494 +0.2 1.1 cytochrome b561 (RefSeq) compare
Sama_1744 +0.2 1.2 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) compare
Sama_0558 +0.2 1.6 hypothetical protein (RefSeq) compare
Sama_1093 +0.2 1.1 fumarylacetoacetate (FAA) hydrolase (RefSeq) compare
Sama_1633 +0.2 1.1 phage integrase family site specific recombinase (RefSeq) compare
Sama_2672 +0.2 1.7 hypothetical protein (RefSeq) compare
Sama_2530 +0.2 0.9 bacterioferritin subunit 2 (RefSeq) compare
Sama_2414 +0.2 1.4 OsmC family protein (RefSeq) compare
Sama_1165 +0.2 0.8 putative lipoprotein (RefSeq) compare
Sama_0612 +0.2 1.4 D-lactate dehydrogenase (RefSeq) compare
Sama_1518 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1550 +0.2 1.0 threonine efflux protein, putative (RefSeq) compare
Sama_1309 +0.2 1.1 adenine phosphoribosyltransferase (RefSeq) compare
Sama_1153 rnhB +0.2 0.9 ribonuclease HII (RefSeq) compare
Sama_0139 +0.2 1.7 secretion protein HlyD (RefSeq) compare
Sama_2052 +0.2 0.5 hypothetical protein (RefSeq) compare
Sama_1571 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1893 +0.2 1.4 putative sulfite oxidase subunit YedY (RefSeq) compare
Sama_2633 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1483 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1577 +0.2 0.4 hypothetical protein (RefSeq) compare
Sama_0307 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_2475 +0.2 1.3 twitching motility protein PilU (RefSeq) compare
Sama_2279 +0.2 0.6 response regulator receiver protein (RefSeq) compare
Sama_0743 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2290 fliM +0.2 1.0 flagellar motor switch protein FliM (RefSeq) compare
Sama_1129 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_3472 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1121 +0.2 1.0 SecY interacting protein Syd (RefSeq) compare
Sama_2139 +0.2 1.1 exodeoxyribonuclease III (RefSeq) compare
Sama_0982 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_0047 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_1270 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_0953 rrmJ +0.2 1.1 23S rRNA methyltransferase J (RefSeq) compare
Sama_0705 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_2244 +0.2 1.5 polysaccharide biosynthesis protein (RefSeq) compare
Sama_0053 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_2102 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_3487 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_1468 +0.2 0.8 putative macrolide efflux ABC transporter, ATP-binding protein (RefSeq) compare
Sama_3007 +0.2 1.5 sensor histidine kinase (RefSeq) compare
Sama_2962 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_1707 +0.2 0.9 protein-methionine-S-oxide reductase (RefSeq) compare
Sama_3471 +0.2 1.4 tetraheme cytochrome c (RefSeq) compare
Sama_2844 +0.2 0.6 hypothetical protein (RefSeq) compare
Sama_2986 +0.2 1.2 cytochrome c-type protein NapB (RefSeq) compare
Sama_2733 +0.2 1.1 MerR family transcriptional regulator (RefSeq) compare
Sama_2129 +0.2 1.3 anthranilate synthase component I (RefSeq) compare
Sama_0570 +0.2 1.2 hypothetical protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella amazonensis SB2B in lb experiments