Experiment set2H18 for Pseudomonas stutzeri RCH2

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L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -6.3 -4.4 methionine biosynthesis protein MetW compare
Psest_0508 -6.1 -8.3 gamma-glutamyl phosphate reductase compare
Psest_3647 -6.0 -5.9 Indole-3-glycerol phosphate synthase compare
Psest_2591 -6.0 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_2584 -6.0 -4.1 Phosphoribosylanthranilate isomerase compare
Psest_3866 -5.7 -14.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3648 -5.6 -6.7 anthranilate phosphoribosyltransferase compare
Psest_2590 -5.5 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0152 -5.4 -9.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_2088 -5.4 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0155 -5.4 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -5.2 -12.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0280 -5.2 -17.4 homoserine O-acetyltransferase compare
Psest_3650 -5.1 -11.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3384 -5.0 -11.1 glutamate 5-kinase compare
Psest_0153 -4.9 -15.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3226 -4.8 -1.6 Predicted membrane protein compare
Psest_2579 -4.8 -9.6 amidophosphoribosyltransferase compare
Psest_2589 -4.7 -14.7 3-isopropylmalate dehydrogenase compare
Psest_2578 -4.6 -14.9 O-succinylhomoserine sulfhydrylase compare
Psest_3944 -4.6 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3298 -4.6 -13.5 histidinol dehydrogenase compare
Psest_3864 -4.2 -17.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3649 -4.2 -11.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0062 -4.2 -12.0 tryptophan synthase, alpha subunit compare
Psest_3810 -4.2 -2.9 orotate phosphoribosyltransferase compare
Psest_3721 -4.1 -10.4 Malic enzyme compare
Psest_0687 -4.1 -11.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0325 -4.0 -13.5 Putative threonine efflux protein compare
Psest_1474 -3.9 -8.5 phosphoribosylaminoimidazole synthetase compare
Psest_3818 -3.8 -10.6 endoribonuclease L-PSP, putative compare
Psest_1452 -3.8 -12.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0063 -3.8 -8.3 tryptophan synthase, beta subunit compare
Psest_0489 -3.4 -5.6 phosphoserine phosphatase SerB compare
Psest_1947 -3.3 -2.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0313 -3.3 -6.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1013 -3.3 -6.8 phosphoribosylamine--glycine ligase compare
Psest_3159 -3.1 -9.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3531 -3.0 -2.0 Peptidase propeptide and YPEB domain. compare
Psest_2329 -2.9 -15.2 Transcriptional regulator compare
Psest_1295 -2.8 -9.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2413 -2.8 -3.6 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3123 -2.7 -5.2 dihydroorotase, homodimeric type compare
Psest_3932 -2.6 -6.3 nitrogen regulation protein NR(I) compare
Psest_1473 -2.5 -6.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1772 -2.4 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4307 -2.3 -3.3 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3998 -2.3 -6.4 glutamate--cysteine ligase compare
Psest_0212 -2.2 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_1496 -2.1 -1.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3943 -2.0 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0170 -2.0 -6.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_1008 -1.9 -1.7 hypothetical protein compare
Psest_0953 -1.9 -8.1 iron-sulfur cluster-binding protein compare
Psest_0207 -1.9 -2.3 hypothetical protein compare
Psest_0872 -1.9 -1.8 Helix-turn-helix. compare
Psest_0326 -1.8 -5.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0954 -1.8 -5.3 Fe-S oxidoreductase compare
Psest_0575 -1.8 -1.0 HrpA-like helicases compare
Psest_2122 -1.8 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3767 -1.7 -5.8 tyrosine recombinase XerC compare
Psest_0066 -1.7 -1.8 Protein of unknown function (DUF3060). compare
Psest_3908 -1.7 -1.2 Cytochrome c553 compare
Psest_1037 -1.7 -2.5 acetolactate synthase, small subunit compare
Psest_2120 -1.6 -1.9 Transcriptional regulator compare
Psest_3573 -1.6 -5.1 dTDP-4-dehydrorhamnose reductase compare
Psest_0277 -1.6 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0708 -1.6 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_0998 -1.5 -3.0 poly(A) polymerase compare
Psest_3031 -1.5 -1.1 hypothetical protein compare
Psest_4406 -1.5 -2.0 hypothetical protein compare
Psest_3178 -1.5 -3.0 formyltetrahydrofolate deformylase compare
Psest_2718 -1.5 -1.7 hypothetical protein compare
Psest_0197 -1.4 -9.0 TRAP transporter, 4TM/12TM fusion protein conserved
Psest_1631 -1.4 -2.0 Uncharacterized conserved small protein compare
Psest_2090 -1.4 -2.4 Protein of unknown function (DUF2970). compare
Psest_0292 -1.4 -3.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3459 -1.4 -2.3 hypothetical protein compare
Psest_3297 -1.4 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0064 -1.3 -1.9 Transcriptional regulator compare
Psest_0952 -1.3 -1.4 Uncharacterized conserved protein compare
Psest_1640 -1.3 -8.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3303 -1.3 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2863 -1.3 -4.0 Transcriptional regulator compare
Psest_4126 -1.3 -2.4 Predicted peroxiredoxins compare
Psest_3012 -1.3 -2.9 cob(II)yrinic acid a,c-diamide reductase compare
Psest_1082 -1.3 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0061 -1.2 -2.6 hypothetical protein compare
Psest_1498 -1.2 -3.0 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3480 -1.2 -1.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2872 -1.2 -2.0 protein RecA compare
Psest_3305 -1.2 -5.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3307 -1.2 -6.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2324 -1.2 -8.5 hypothetical protein compare
Psest_1704 -1.2 -1.8 Dehydrogenases (flavoproteins) compare
Psest_3905 -1.2 -2.7 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_0842 -1.2 -1.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2581 -1.2 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1486 -1.2 -2.8 hypothetical protein compare
Psest_3761 -1.2 -1.7 Transcription elongation factor compare
Psest_3162 -1.1 -5.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family conserved
Psest_3338 -1.1 -1.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3306 -1.1 -2.3 conserved hypothetical integral membrane protein compare
Psest_0198 -1.1 -4.7 TRAP transporter solute receptor, TAXI family compare
Psest_4298 -1.1 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3645 -1.1 -5.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3191 -1.1 -3.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_2845 -1.0 -5.1 [Protein-PII] uridylyltransferase compare
Psest_0411 -1.0 -6.4 biotin synthetase compare
Psest_1417 -1.0 -1.1 hypothetical protein compare
Psest_0498 -1.0 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_4363 -1.0 -4.5 ATPases involved in chromosome partitioning compare
Psest_3013 -1.0 -1.9 cobyrinic acid a,c-diamide synthase compare
Psest_3177 -1.0 -1.6 hypothetical protein compare
Psest_3931 -1.0 -2.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_0281 -1.0 -5.1 Dynamin family. compare
Psest_2862 -1.0 -4.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0086 -1.0 -1.6 hypothetical protein compare
Psest_3163 -1.0 -5.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain conserved
Psest_1837 -1.0 -4.1 Endoglucanase compare
Psest_0414 -1.0 -2.4 biotin biosynthesis protein BioC compare
Psest_2325 -1.0 -4.6 alpha-L-glutamate ligase-related protein compare
Psest_3899 -1.0 -2.3 Predicted phosphoribosyltransferases compare
Psest_3367 -1.0 -1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_0678 -1.0 -1.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1215 -1.0 -2.2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0193 -1.0 -0.7 conserved hypothetical protein compare
Psest_1451 -1.0 -1.2 Uncharacterized ABC-type transport system, permease components compare
Psest_2809 -1.0 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3398 -1.0 -3.1 large conductance mechanosensitive channel protein compare
Psest_1656 -1.0 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0442 -1.0 -4.5 ATPases of the AAA+ class compare
Psest_1686 -0.9 -3.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2357 -0.9 -1.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_2282 -0.9 -2.4 Dihydroorotate dehydrogenase compare
Psest_2104 -0.9 -1.6 IscR-regulated protein YhgI compare
Psest_2323 -0.9 -6.0 Uncharacterized protein conserved in archaea compare
Psest_0445 -0.9 -6.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2365 -0.9 -2.3 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1750 -0.9 -2.8 Protein of unknown function (DUF2802). compare
Psest_4145 -0.9 -1.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2238 -0.9 -2.5 hypothetical protein compare
Psest_3745 -0.9 -2.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_2946 -0.9 -2.4 septum site-determining protein MinD compare
Psest_2712 -0.9 -3.0 Surface lipoprotein compare
Psest_3535 -0.8 -2.7 hypothetical protein compare
Psest_3304 -0.8 -3.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1905 -0.8 -1.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_4005 -0.8 -3.7 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3322 -0.8 -6.5 TIGR02099 family protein compare
Psest_3161 -0.8 -4.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family conserved
Psest_3148 -0.8 -1.1 hypothetical protein compare
Psest_4191 -0.8 -1.4 Transcriptional regulator compare
Psest_4053 -0.8 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3518 -0.8 -1.0 Transcriptional regulators compare
Psest_0499 -0.8 -3.4 hypothetical protein compare
Psest_2967 -0.8 -2.6 flagellar basal-body rod protein FlgC compare
Psest_1360 -0.8 -2.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0955 -0.8 -2.7 D,L-lactate:H+ symporter (from data) compare
Psest_4371 -0.8 -1.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1242 -0.8 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1814 -0.8 -6.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4100 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_4044 -0.8 -3.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0216 -0.8 -2.3 Predicted permeases compare
Psest_2037 -0.8 -3.3 uroporphyrin-III C-methyltransferase compare
Psest_0609 -0.8 -1.2 hypothetical protein compare
Psest_0415 -0.8 -2.2 dethiobiotin synthase compare
Psest_3187 -0.8 -2.4 hypothetical protein compare
Psest_4209 -0.7 -1.1 Uncharacterized conserved small protein compare
Psest_0759 -0.7 -0.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0568 -0.7 -2.1 pseudouridine synthase compare
Psest_4310 -0.7 -0.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2015 -0.7 -1.7 Type II secretory pathway, component PulD compare
Psest_0857 -0.7 -0.8 Membrane transporters of cations and cationic drugs compare
Psest_3537 -0.7 -2.4 hypothetical protein compare
Psest_0805 -0.7 -1.5 hypothetical protein compare
Psest_4390 -0.7 -1.9 hypothetical protein compare
Psest_0182 -0.7 -2.1 glycine cleavage system H protein compare
Psest_0284 -0.7 -4.5 pyridoxal phosphate enzyme, YggS family compare
Psest_1752 -0.7 -1.0 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3754 -0.7 -1.2 Uncharacterized protein involved in response to NO compare
Psest_0999 -0.7 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4252 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0902 -0.7 -2.2 Predicted transcriptional regulators compare
Psest_2053 -0.7 -2.7 Uncharacterized low-complexity proteins compare
Psest_1945 -0.7 -2.3 hypothetical protein compare
Psest_4102 -0.7 -1.9 peroxiredoxin, Ohr subfamily compare
Psest_1741 -0.7 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3242 -0.7 -2.3 hypothetical protein compare
Psest_2225 -0.7 -2.0 Diacylglycerol kinase compare
Psest_4077 -0.7 -4.5 amino acid carrier protein compare
Psest_3700 -0.7 -0.2 hypothetical protein compare
Psest_2253 -0.6 -1.5 small redox-active disulfide protein 2 compare
Psest_0095 -0.6 -1.0 phosphonate C-P lyase system protein PhnH compare
Psest_3206 -0.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0991 -0.6 -2.2 Predicted SAM-dependent methyltransferases compare
Psest_3962 -0.6 -1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1660 -0.6 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1371 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms