Experiment set2H17 for Pseudomonas stutzeri RCH2

Compare to:

L-Arginine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3862 -5.8 -15.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3647 -5.7 -6.7 Indole-3-glycerol phosphate synthase compare
Psest_3649 -5.5 -6.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0508 -5.3 -10.7 gamma-glutamyl phosphate reductase compare
Psest_0155 -5.2 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -5.2 -7.9 anthranilate phosphoribosyltransferase compare
Psest_0279 -5.2 -7.9 methionine biosynthesis protein MetW compare
Psest_0152 -5.2 -7.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -5.1 -15.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3298 -5.0 -12.4 histidinol dehydrogenase compare
Psest_2584 -4.8 -8.0 Phosphoribosylanthranilate isomerase compare
Psest_3864 -4.8 -16.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3650 -4.8 -13.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2591 -4.7 -6.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3299 -4.6 -16.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3710 -4.5 -15.1 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3317 -4.5 -8.7 Phosphotransferase System HPr (HPr) Family compare
Psest_3866 -4.5 -20.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2590 -4.4 -2.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0687 -4.4 -10.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -4.3 -15.3 3-isopropylmalate dehydrogenase compare
Psest_0062 -4.3 -11.1 tryptophan synthase, alpha subunit compare
Psest_2578 -4.2 -17.6 O-succinylhomoserine sulfhydrylase compare
Psest_3711 -4.2 -14.4 Glutamate synthase domain 2 compare
Psest_0489 -4.2 -4.0 phosphoserine phosphatase SerB compare
Psest_1474 -4.1 -9.4 phosphoribosylaminoimidazole synthetase compare
Psest_0280 -4.0 -17.4 homoserine O-acetyltransferase compare
Psest_0063 -4.0 -7.2 tryptophan synthase, beta subunit compare
Psest_3123 -3.9 -6.3 dihydroorotase, homodimeric type compare
Psest_2579 -3.8 -12.0 amidophosphoribosyltransferase compare
Psest_3932 -3.6 -6.8 nitrogen regulation protein NR(I) compare
Psest_0313 -3.5 -5.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1013 -3.5 -5.7 phosphoribosylamine--glycine ligase compare
Psest_3159 -3.5 -12.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3944 -3.4 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3384 -3.2 -12.9 glutamate 5-kinase compare
Psest_0953 -3.2 -13.2 iron-sulfur cluster-binding protein compare
Psest_4287 -3.1 -9.7 Predicted glutamine amidotransferases compare
Psest_1037 -2.9 -3.3 acetolactate synthase, small subunit compare
Psest_0954 -2.8 -9.9 Fe-S oxidoreductase compare
Psest_1496 -2.8 -2.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3931 -2.8 -4.7 Signal transduction histidine kinase, nitrogen specific compare
Psest_2356 -2.7 -12.6 Fatty acid desaturase compare
Psest_1947 -2.7 -4.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2355 -2.7 -10.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_4288 -2.6 -15.4 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) conserved
Psest_3297 -2.5 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3810 -2.5 -4.3 orotate phosphoribosyltransferase compare
Psest_2351 -2.4 -15.9 urea carboxylase compare
Psest_2845 -2.4 -12.4 [Protein-PII] uridylyltransferase compare
Psest_0952 -2.4 -4.6 Uncharacterized conserved protein compare
Psest_2349 -2.3 -6.6 urea carboxylase-associated protein 1 compare
Psest_2348 -2.3 -4.1 urea carboxylase-associated protein 2 compare
Psest_3092 -2.3 -3.1 ribonuclease III, bacterial compare
Psest_2088 -2.2 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_2988 -2.2 -8.0 aspartate kinase, monofunctional class compare
Psest_1452 -2.1 -12.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3943 -2.1 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0722 -2.1 -9.3 Predicted ATPase compare
Psest_3129 -2.0 -2.8 tyrosine recombinase XerD compare
Psest_0309 -1.9 -1.8 RND family efflux transporter, MFP subunit compare
Psest_3178 -1.9 -5.4 formyltetrahydrofolate deformylase compare
Psest_3476 -1.9 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0170 -1.9 -7.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_3518 -1.8 -2.1 Transcriptional regulators compare
Psest_1999 -1.7 -2.8 pseudouridine synthase compare
Psest_1837 -1.7 -9.0 Endoglucanase compare
Psest_3031 -1.7 -1.6 hypothetical protein compare
Psest_2067 -1.6 -2.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1506 -1.6 -5.3 queuosine biosynthesis protein QueC compare
Psest_4406 -1.6 -1.8 hypothetical protein compare
Psest_1870 -1.5 -2.1 Transcriptional regulators compare
Psest_1640 -1.5 -10.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0359 -1.5 -2.9 Transcriptional regulators compare
Psest_3047 -1.4 -1.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1012 -1.4 -5.1 Signal transduction histidine kinase compare
Psest_0558 -1.4 -1.3 urease, beta subunit compare
Psest_2104 -1.4 -3.4 IscR-regulated protein YhgI compare
Psest_0732 -1.4 -2.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3818 -1.4 -4.3 endoribonuclease L-PSP, putative compare
Psest_0212 -1.4 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_4303 -1.4 -1.2 HEAT repeat. compare
Psest_4049 -1.3 -2.3 hypothetical protein compare
Psest_1920 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2352 -1.3 -7.9 allophanate hydrolase compare
Psest_3910 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0411 -1.3 -7.9 biotin synthetase compare
Psest_2946 -1.3 -4.8 septum site-determining protein MinD compare
Psest_0955 -1.3 -4.7 D,L-lactate:H+ symporter (from data) compare
Psest_1772 -1.3 -4.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3890 -1.3 -1.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0857 -1.2 -1.4 Membrane transporters of cations and cationic drugs compare
Psest_3772 -1.2 -4.4 ammonium transporter compare
Psest_0959 -1.2 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_0136 -1.2 -8.8 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3927 -1.2 -4.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2650 -1.2 -4.0 hypothetical protein compare
Psest_3938 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0137 -1.2 -6.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0417 -1.2 -2.5 Acyl-CoA dehydrogenases compare
Psest_0737 -1.2 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_3008 -1.2 -2.7 cobyric acid synthase CobQ compare
Psest_4290 -1.2 -4.7 N-carbamoylputrescine amidase compare
Psest_3477 -1.1 -3.1 Signal transduction histidine kinase compare
Psest_0138 -1.1 -6.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1704 -1.1 -1.7 Dehydrogenases (flavoproteins) compare
Psest_4309 -1.1 -3.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_1242 -1.1 -1.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0115 -1.1 -1.3 Predicted integral membrane protein compare
Psest_3303 -1.1 -4.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3998 -1.1 -4.4 glutamate--cysteine ligase compare
Psest_1388 -1.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1292 -1.0 -6.2 monothiol glutaredoxin, Grx4 family compare
Psest_3114 -1.0 -6.5 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2976 -1.0 -2.8 hypothetical protein compare
Psest_3117 -1.0 -4.5 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1679 -1.0 -2.0 ribonuclease, Rne/Rng family compare
Psest_3366 -1.0 -7.9 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Psest_2714 -1.0 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_2329 -1.0 -7.6 Transcriptional regulator compare
Psest_0175 -1.0 -5.6 Xaa-Pro aminopeptidase compare
Psest_3163 -1.0 -6.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0692 -1.0 -2.4 rRNA methylase, putative, group 3 compare
Psest_4325 -1.0 -2.6 hypothetical protein compare
Psest_2025 -1.0 -1.3 cold shock domain protein CspD compare
Psest_2158 -1.0 -8.0 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_4305 -1.0 -2.9 NAD-dependent aldehyde dehydrogenases compare
Psest_0218 -1.0 -2.1 Acyl-CoA hydrolase compare
Psest_1527 -1.0 -7.2 Na+/proline symporter compare
Psest_2945 -1.0 -1.1 septum site-determining protein MinC compare
Psest_0191 -1.0 -1.1 PAS domain S-box compare
Psest_3367 -1.0 -1.4 translation initation factor SUI1, putative, prokaryotic compare
Psest_3835 -1.0 -5.2 Rubredoxin compare
Psest_0644 -0.9 -2.8 siderophore ferric iron reductase, AHA_1954 family compare
Psest_2150 -0.9 -1.1 DNA polymerase LigD, polymerase domain compare
Psest_4201 -0.9 -1.8 general secretion pathway protein F compare
Psest_2347 -0.9 -2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2726 -0.9 -1.1 Rhodanese-related sulfurtransferase compare
Psest_2358 -0.9 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0697 -0.9 -2.2 ribosomal protein L9 compare
Psest_2359 -0.9 -2.8 Predicted permeases compare
Psest_2718 -0.9 -2.1 hypothetical protein compare
Psest_2357 -0.9 -1.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_2364 -0.9 -4.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3113 -0.9 -2.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3161 -0.9 -5.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3762 -0.9 -2.7 iron donor protein CyaY compare
Psest_3494 -0.9 -1.6 hypothetical protein compare
Psest_1815 -0.9 -6.8 pseudaminic acid synthase compare
Psest_0093 -0.9 -1.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0334 -0.9 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0139 -0.9 -3.1 ABC-type histidine transport system, ATPase component compare
Psest_3162 -0.9 -6.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1951 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0398 -0.8 -3.8 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0067 -0.8 -2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3338 -0.8 -0.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0951 -0.8 -5.0 FAD/FMN-containing dehydrogenases compare
Psest_4098 -0.8 -2.4 Superfamily I DNA and RNA helicases compare
Psest_1814 -0.8 -6.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3545 -0.8 -2.6 clan AA aspartic protease, TIGR02281 family compare
Psest_4291 -0.8 -3.5 agmatine deiminase compare
Psest_0693 -0.8 -7.7 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0381 -0.8 -3.7 hypothetical protein compare
Psest_0094 -0.8 -1.7 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3115 -0.8 -5.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0310 -0.8 -1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1282 -0.8 -1.4 Amidases related to nicotinamidase compare
Psest_1843 -0.8 -3.2 Uncharacterized Fe-S protein compare
Psest_2369 -0.8 -2.5 Transcriptional regulator compare
Psest_3777 -0.8 -1.6 diguanylate cyclase (GGDEF) domain compare
Psest_3767 -0.8 -3.3 tyrosine recombinase XerC compare
Psest_2363 -0.8 -3.6 hypothetical protein compare
Psest_3399 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2346 -0.8 -3.2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_4061 -0.8 -2.3 sulfate ABC transporter, permease protein CysT compare
Psest_2864 -0.8 -3.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0192 -0.7 -4.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1974 -0.7 -3.2 integration host factor, alpha subunit compare
Psest_0958 -0.7 -4.7 Oligoketide cyclase/lipid transport protein compare
Psest_4247 -0.7 -2.3 Serine/threonine protein phosphatase compare
Psest_0691 -0.7 -5.4 ribonuclease R compare
Psest_1686 -0.7 -3.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0154 -0.7 -2.6 Uncharacterized conserved protein compare
Psest_4191 -0.7 -2.0 Transcriptional regulator compare
Psest_3565 -0.7 -0.9 hypothetical protein compare
Psest_1473 -0.7 -3.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3960 -0.7 -1.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0106 -0.7 -2.9 malonate decarboxylase, gamma subunit compare
Psest_2027 -0.7 -5.2 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0532 -0.7 -2.8 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_3304 -0.7 -3.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3745 -0.7 -2.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_0182 -0.7 -3.2 glycine cleavage system H protein compare
Psest_2365 -0.7 -2.1 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0498 -0.7 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_0442 -0.7 -3.2 ATPases of the AAA+ class compare
Psest_2530 -0.7 -3.1 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3721 -0.7 -3.3 Malic enzyme compare
Psest_0379 -0.7 -1.9 Galactose mutarotase and related enzymes compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Arginine in Pseudomonas stutzeri RCH2

For nitrogen source L-Arginine across organisms