Experiment set2H16 for Shewanella amazonensis SB2B

Compare to:

Minimal media with D-Maltose monohydrate as carbon source

200 most detrimental genes:

  gene name fitness t score description  
Sama_3129 +2.8 14.8 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_3018 sspA +2.2 14.8 stringent starvation protein A (RefSeq) compare
Sama_0170 +1.8 6.7 general secretion pathway protein E (RefSeq) compare
Sama_2266 +1.8 11.8 amino acid/peptide transporter (RefSeq) compare
Sama_2406 +1.7 14.7 ATP-dependent protease, putative (RefSeq) compare
Sama_0173 +1.7 4.9 general secretion pathway protein H (RefSeq) compare
Sama_1228 +1.5 4.1 peptidyl-prolyl cis-trans isomerase D (RefSeq) compare
Sama_0367 +1.4 5.6 prepilin peptidase (RefSeq) compare
Sama_0176 +1.4 3.4 general secretion pathway protein K (RefSeq) compare
Sama_1248 +1.4 10.1 hypothetical protein (RefSeq) compare
Sama_3066 +1.4 7.3 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_1555 +1.4 5.2 hypothetical protein (RefSeq) compare
Sama_0184 +1.4 12.0 cysQ protein (RefSeq) compare
Sama_0169 +1.4 6.1 type II and III secretion system protein (RefSeq) compare
Sama_0808 +1.3 3.2 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_2521 +1.2 7.8 agmatine deiminase (RefSeq) compare
Sama_0106 +1.1 9.6 hypothetical protein (RefSeq) compare
Sama_2267 +1.1 7.9 response regulator receiver protein (RefSeq) compare
Sama_3511 envZ +1.1 9.7 osmolarity sensor protein (RefSeq) compare
Sama_1649 +1.1 3.1 glucose-specific PTS system component (RefSeq) compare
Sama_3083 +1.1 1.5 arabinose-5-phosphate isomerase (RefSeq) compare
Sama_0845 +1.1 4.0 hypothetical protein (RefSeq) compare
Sama_1722 ansA +1.0 3.2 cytoplasmic asparaginase I (RefSeq) compare
Sama_0166 hslO +1.0 7.8 Hsp33-like chaperonin (RefSeq) compare
Sama_3022 +1.0 5.0 hflC protein (RefSeq) compare
Sama_3023 +1.0 4.6 hflK protein (RefSeq) compare
Sama_3510 ompR +1.0 6.6 osmolarity response regulator (RefSeq) compare
Sama_1651 +1.0 2.4 phosphocarrier protein HPr (RefSeq) compare
Sama_2328 +0.9 7.1 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_3363 +0.9 4.7 hypothetical protein (RefSeq) compare
Sama_2520 +0.9 6.8 putative transcriptional regulator (RefSeq) compare
Sama_2738 +0.9 4.6 thiol:disulfide interchange protein DsbC (RefSeq) compare
Sama_0642 +0.8 3.2 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq) compare
Sama_2329 +0.8 5.7 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_2335 +0.8 5.7 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_2044 +0.8 2.6 hypothetical protein (RefSeq) compare
Sama_2331 +0.8 5.0 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_0660 +0.8 5.1 hypothetical protein (RefSeq) compare
Sama_2856 +0.8 2.0 TetR family transcriptional regulator (RefSeq) compare
Sama_2285 fliR +0.8 5.0 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_2621 +0.8 2.9 malate dehydrogenase (RefSeq) compare
Sama_2288 +0.8 4.4 flagellar protein FliO (RefSeq) compare
Sama_3200 +0.8 5.7 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_0684 +0.8 6.3 aminopeptidase P, putative (RefSeq) compare
Sama_1591 +0.8 5.6 adhesin-associated MmpL efflux pump (from data) compare
Sama_2336 +0.8 5.2 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_0141 +0.8 6.2 ferritin (RefSeq) compare
Sama_1616 +0.7 5.9 hypothetical protein (RefSeq) compare
Sama_3214 +0.7 5.3 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_2746 +0.7 6.5 sensory box protein, putative (RefSeq) compare
Sama_1813 +0.7 3.0 DNA-binding transcriptional regulator HexR (RefSeq) compare
Sama_1826 +0.7 2.2 ExsB protein (RefSeq) compare
Sama_0171 +0.7 2.6 general secretion pathway protein F (RefSeq) compare
Sama_2124 +0.7 3.0 pseudouridine synthase, Rsu (RefSeq) compare
Sama_1594 +0.7 1.3 hypothetical protein (RefSeq) compare
Sama_1454 +0.7 4.4 aminoglycoside phosphotransferase (RefSeq) compare
Sama_1588 +0.7 5.5 putative adhesin (DUF1302) (from data) compare
Sama_0109 +0.7 6.2 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_1590 +0.7 4.8 adhesin-associated BNR repeat protein (from data) compare
Sama_1124 +0.7 2.7 hypothetical protein (RefSeq) compare
Sama_3258 +0.7 6.7 putative outer membrane adhesin like protein (RefSeq) compare
Sama_3259 +0.7 6.5 toxin secretion ATP-binding protein (RefSeq) compare
Sama_1589 +0.7 5.1 adhesin-associated sorting protein (DUF1329) (from data) compare
Sama_1883 +0.7 5.0 hypothetical protein (RefSeq) compare
Sama_0374 pdhR +0.7 4.4 transcriptional regulator PdhR (RefSeq) compare
Sama_1805 +0.7 3.9 aromatic amino acid aminotransferase (RefSeq) compare
Sama_1652 +0.7 2.5 hypothetical protein (RefSeq) compare
Sama_3261 +0.6 5.8 type I secretion outer membrane protein, TolC (RefSeq) compare
Sama_0971 +0.6 4.9 nucleoside transporter (RefSeq) compare
Sama_2190 secF +0.6 2.1 preprotein translocase subunit SecF (RefSeq) compare
Sama_3260 +0.6 5.7 HlyD family secretion protein (RefSeq) compare
Sama_0379 +0.6 5.9 hypothetical protein (RefSeq) compare
Sama_0320 +0.6 2.6 tRNA nucleotidyltransferase (RefSeq) compare
Sama_1349 +0.6 2.6 hypothetical protein (RefSeq) compare
Sama_1446 +0.6 3.4 response regulator receiver protein (RefSeq) compare
Sama_2282 flhF +0.6 3.9 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_1906 +0.6 5.0 HlyD family-like protein (RefSeq) compare
Sama_2302 fliS +0.6 2.9 flagellar protein FliS (RefSeq) compare
Sama_0372 +0.6 4.9 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) compare
Sama_3193 +0.6 3.1 peptidyl-tRNA hydrolase domain protein (RefSeq) compare
Sama_0937 +0.6 5.2 LacI family transcription regulator (RefSeq) compare
Sama_0465 +0.6 2.0 MSHA biogenesis protein MshP (RefSeq) compare
Sama_0769 +0.6 2.9 UDP-N-acetylmuramate (RefSeq) compare
Sama_2298 +0.6 2.2 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_2314 flgF +0.6 2.9 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_1868 +0.6 1.9 hypothetical protein (RefSeq) compare
Sama_3543 +0.6 5.3 glutathione reductase (RefSeq) compare
Sama_1615 +0.6 4.8 hypothetical protein (RefSeq) compare
Sama_2081 grxA +0.6 3.1 glutaredoxin 1 (RefSeq) compare
Sama_2160 +0.6 3.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) compare
Sama_2306 +0.6 2.8 flagellin-like protein (RefSeq) compare
Sama_0441 +0.6 1.9 ATP-dependent protease peptidase subunit (RefSeq) compare
Sama_0595 +0.6 4.4 sodium:dicarboxylate symporter (RefSeq) compare
Sama_0533 +0.6 4.9 alcohol dehydrogenase, zinc-containing (RefSeq) compare
Sama_2555 +0.6 3.5 hypothetical protein (RefSeq) compare
Sama_2330 +0.6 3.3 hypothetical protein (RefSeq) compare
Sama_1191 +0.6 1.8 hypothetical protein (RefSeq) compare
Sama_1974 +0.6 2.4 Cytidine deaminase (EC 3.5.4.5) (from data) compare
Sama_2284 flhB +0.5 3.0 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_1032 rumA +0.5 4.4 23S rRNA 5-methyluridine methyltransferase (RefSeq) compare
Sama_1085 +0.5 2.2 hypothetical protein (RefSeq) compare
Sama_1326 +0.5 3.0 beta-hexosaminidase (RefSeq) compare
Sama_0179 +0.5 3.4 general secretion pathway protein N (RefSeq) compare
Sama_1564 +0.5 3.7 peptidyl-dipeptidase Dcp (RefSeq) compare
Sama_2333 +0.5 2.5 hypothetical protein (RefSeq) compare
Sama_1346 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_1387 +0.5 1.4 hypothetical protein (RefSeq) compare
Sama_1238 pspB +0.5 1.7 phage shock protein B (RefSeq) compare
Sama_2556 +0.5 4.4 AmpG protein, putative (RefSeq) compare
Sama_2241 +0.5 1.3 hypothetical protein (RefSeq) compare
Sama_0397 +0.5 4.1 hypothetical protein (RefSeq) compare
Sama_1252 +0.5 4.4 TonB-dependent receptor (RefSeq) compare
Sama_2297 fliF +0.5 3.1 flagellar MS-ring protein (RefSeq) compare
Sama_1249 dinG +0.5 3.8 ATP-dependent DNA helicase DinG (RefSeq) compare
Sama_0952 +0.5 3.3 RNA-binding protein (RefSeq) compare
Sama_1270 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_3100 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_0645 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_2219 +0.5 2.7 fumarylacetoacetate hydrolase family protein (RefSeq) compare
Sama_0589 +0.5 3.4 phosphate-selective porin O and P (RefSeq) compare
Sama_0451 +0.5 2.9 hypothetical protein (RefSeq) compare
Sama_2287 fliP +0.5 3.1 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_0396 zntR +0.5 2.0 zinc-responsive transcriptional regulator (RefSeq) compare
Sama_2294 fliI +0.5 3.2 flagellum-specific ATP synthase (RefSeq) compare
Sama_2742 +0.5 2.9 ATP-dependent RNA helicase SrmB (RefSeq) compare
Sama_0899 +0.5 2.1 ribosomal subunit interface protein (RefSeq) compare
Sama_3527 +0.5 2.1 molybdenum cofactor biosynthesis protein D (RefSeq) compare
Sama_3224 prmA +0.5 3.4 ribosomal protein L11 methyltransferase (RefSeq) compare
Sama_0462 +0.5 3.1 MSHA pilin protein MshC (RefSeq) compare
Sama_2348 +0.5 2.8 cytochrome bd-I oxidase subunit II (RefSeq) compare
Sama_0450 +0.5 3.2 biogenesis protein MshI (RefSeq) compare
Sama_2191 secD +0.5 1.7 preprotein translocase subunit SecD (RefSeq) compare
Sama_1503 +0.4 4.0 outer membrane receptor protein (RefSeq) compare
Sama_3528 +0.4 2.0 molybdenum cofactor biosynthesis protein E (RefSeq) compare
Sama_1449 +0.4 2.9 hypothetical protein (RefSeq) compare
Sama_2283 flhA +0.4 3.7 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_0168 +0.4 2.0 general secretion pathway protein C (RefSeq) compare
Sama_0454 +0.4 3.8 MSHA biogenesis protein MshL (RefSeq) compare
Sama_3267 +0.4 2.1 TetR family transcriptional regulator (RefSeq) compare
Sama_1543 +0.4 2.9 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) compare
Sama_2481 +0.4 3.0 hypothetical protein (RefSeq) compare
Sama_2301 +0.4 2.6 response regulator receiver protein (RefSeq) compare
Sama_2562 +0.4 2.7 hypothetical protein (RefSeq) compare
Sama_1308 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1263 +0.4 2.3 acetyltransferase (RefSeq) compare
Sama_1383 +0.4 3.5 prolyl oligopeptidase family protein (RefSeq) compare
Sama_1905 +0.4 3.4 AcrB/AcrD/AcrF family protein (RefSeq) compare
Sama_3382 +0.4 3.1 hypothetical protein (RefSeq) compare
Sama_2793 +0.4 2.2 hypothetical protein (RefSeq) compare
Sama_0935 +0.4 1.9 nitrogen regulatory protein P-II (RefSeq) compare
Sama_1857 +0.4 1.8 thiamine biosynthesis protein ThiS (RefSeq) compare
Sama_2321 flgA +0.4 3.2 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_1871 +0.4 3.2 sodium/hydrogen exchanger family protein (RefSeq) compare
Sama_2296 fliG +0.4 1.4 flagellar motor switch protein G (RefSeq) compare
Sama_2548 +0.4 2.3 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) compare
Sama_0458 +0.4 3.3 MSHA biogenesis protein MshG (RefSeq) compare
Sama_0989 +0.4 1.4 warning TorE protein (RefSeq) compare
Sama_3381 +0.4 2.3 hypothetical protein (RefSeq) compare
Sama_1281 +0.4 2.3 putative two-component response-regulatory protein YehT (RefSeq) compare
Sama_0818 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_1698 +0.4 3.0 hypothetical protein (RefSeq) compare
Sama_1577 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_1013 +0.4 2.3 putative ABC transporter ATP-binding protein (RefSeq) compare
Sama_1959 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1689 +0.4 3.0 peptidase, putative (RefSeq) compare
Sama_2052 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_0108 +0.4 2.8 hypothetical protein (RefSeq) compare
Sama_2034 +0.4 1.2 methyltransferase (RefSeq) compare
Sama_0464 +0.4 3.0 MSHA biogenesis protein MshO precursor (RefSeq) compare
Sama_0390 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_0046 +0.4 3.1 hypothetical protein (RefSeq) compare
Sama_0449 +0.4 3.4 regulatory protein CsrD (RefSeq) compare
Sama_2039 yebU +0.4 1.9 rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) compare
Sama_2620 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2286 +0.4 1.8 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_2383 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_1681 +0.4 1.5 putative lipoprotein (RefSeq) compare
Sama_3170 metL +0.4 3.3 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_0183 nudE +0.4 2.6 ADP-ribose diphosphatase NudE (RefSeq) compare
Sama_2313 flgG +0.4 2.2 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_1770 +0.4 2.3 alanine dehydrogenase (RefSeq) compare
Sama_1838 +0.4 2.8 TonB-dependent receptor, putative (RefSeq) compare
Sama_1762 +0.4 1.8 riboflavin synthase subunit alpha (RefSeq) compare
Sama_1354 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_2472 +0.4 1.5 putative transcriptional regulator (RefSeq) compare
Sama_2341 +0.4 1.9 TetR family transcriptional regulator (RefSeq) compare
Sama_2777 +0.4 2.4 aminotransferase, class V (RefSeq) compare
Sama_2293 +0.4 2.2 flagellar protein FliJ (RefSeq) compare
Sama_0597 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1882 +0.4 1.9 LysR family transcriptional regulator (RefSeq) compare
Sama_1718 +0.4 2.1 response regulator receiver protein (RefSeq) compare
Sama_1560 +0.4 1.9 M24/M37 family peptidase (RefSeq) compare
Sama_2312 flgH +0.4 2.2 flagellar basal body L-ring protein (RefSeq) compare
Sama_3001 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_0466 +0.4 3.2 MSHA biogenesis protein MshQ (RefSeq) compare
Sama_3162 +0.3 2.2 response regulator receiver protein (RefSeq) compare
Sama_0970 +0.3 2.6 TatD-related deoxyribonuclease (RefSeq) compare
Sama_2299 +0.3 2.1 response regulator receiver protein (RefSeq) compare
Sama_2354 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_3452 +0.3 2.1 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Maltose monohydrate in Shewanella amazonensis SB2B

For carbon source D-Maltose monohydrate across organisms