Experiment set29S562 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS29720 +5.7 4.8 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS23140 +4.7 1.4 putrescine/spermidine ABC transporter permease compare
BPHYT_RS03015 +4.1 4.1 aldolase compare
BPHYT_RS11970 +3.8 6.0 cupin compare
BPHYT_RS02600 +3.6 6.2 glutaredoxin compare
BPHYT_RS26575 +3.6 1.7 hypothetical protein compare
BPHYT_RS00115 +3.5 3.7 acetaldehyde dehydrogenase compare
BPHYT_RS20425 +3.4 3.7 hypothetical protein compare
BPHYT_RS20380 +3.1 5.8 LysR family transcriptional regulator compare
BPHYT_RS22840 +3.1 8.8 motility protein B compare
BPHYT_RS20185 +3.1 2.1 sugar transferase compare
BPHYT_RS05570 +3.0 7.5 hypothetical protein compare
BPHYT_RS12380 +3.0 1.9 ABC transporter permease compare
BPHYT_RS24350 +3.0 3.8 hypothetical protein compare
BPHYT_RS20090 +3.0 9.8 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS24740 +3.0 4.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS22215 +2.9 1.5 hypothetical protein compare
BPHYT_RS33125 +2.9 3.6 hypothetical protein compare
BPHYT_RS26770 +2.8 2.5 histidine kinase compare
BPHYT_RS29175 +2.8 2.2 ABC transporter ATP-binding protein compare
BPHYT_RS26015 +2.6 3.6 rod shape-determining protein MreB compare
BPHYT_RS09545 +2.5 2.6 peptide methionine sulfoxide reductase compare
BPHYT_RS00350 +2.5 2.8 hypothetical protein compare
BPHYT_RS11260 +2.5 4.8 LysR family transcriptional regulator compare
BPHYT_RS33380 +2.5 2.4 2-nitropropane dioxygenase compare
BPHYT_RS07920 +2.4 4.7 hypothetical protein compare
BPHYT_RS11265 +2.4 4.5 hypothetical protein compare
BPHYT_RS28470 +2.4 1.5 hypothetical protein compare
BPHYT_RS14005 +2.4 2.9 ABC transporter compare
BPHYT_RS07265 +2.3 5.8 3-hydroxyanthranilate 3,4-dioxygenase compare
BPHYT_RS34155 +2.3 3.3 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS18600 +2.3 3.5 glutathione S-transferase compare
BPHYT_RS10205 +2.3 2.1 D-lactate dehydrogenase compare
BPHYT_RS11890 +2.1 7.1 hypothetical protein compare
BPHYT_RS12400 +2.0 2.8 amidohydrolase 2 compare
BPHYT_RS21585 +2.0 1.7 short-chain dehydrogenase compare
BPHYT_RS33585 +1.9 3.6 exodeoxyribonuclease VII small subunit compare
BPHYT_RS08615 +1.9 2.3 hypothetical protein compare
BPHYT_RS02010 +1.9 1.8 copper homeostasis protein CutC compare
BPHYT_RS21455 +1.9 1.3 type 11 methyltransferase compare
BPHYT_RS35310 +1.9 2.1 GCN5 family N-acetyltransferase compare
BPHYT_RS07230 +1.9 2.6 LysR family transcriptional regulator compare
BPHYT_RS15135 +1.9 2.0 3-ketoacyl-ACP reductase compare
BPHYT_RS36250 +1.9 1.7 hypothetical protein compare
BPHYT_RS11895 +1.8 1.5 peroxiredoxin compare
BPHYT_RS10675 +1.8 3.4 muconate cycloisomerase compare
BPHYT_RS02100 +1.8 2.4 AsnC family transcriptional regulator compare
BPHYT_RS10175 +1.8 3.3 membrane protein compare
BPHYT_RS35735 +1.8 3.1 nitroreductase compare
BPHYT_RS01725 +1.8 1.5 hypothetical protein compare
BPHYT_RS08665 +1.8 1.6 hypothetical protein compare
BPHYT_RS03330 +1.7 3.5 hypothetical protein compare
BPHYT_RS26870 +1.7 1.9 cytochrome C551 compare
BPHYT_RS23960 +1.7 1.6 sugar ABC transporter compare
BPHYT_RS29105 +1.7 1.8 class V aminotransferase compare
BPHYT_RS19935 +1.7 2.6 protein serine/threonine phosphatase compare
BPHYT_RS28430 +1.7 1.5 histidine kinase compare
BPHYT_RS04990 +1.7 3.2 hypothetical protein compare
BPHYT_RS30505 +1.7 3.3 ABC transporter permease compare
BPHYT_RS27655 +1.7 1.0 potassium transporter compare
BPHYT_RS32525 +1.6 1.9 hypothetical protein compare
BPHYT_RS16090 +1.6 1.7 hypothetical protein compare
BPHYT_RS25375 +1.6 1.9 lipid-transfer protein compare
BPHYT_RS25445 +1.6 3.0 alkyl hydroperoxide reductase compare
BPHYT_RS33030 +1.6 1.1 hypothetical protein compare
BPHYT_RS20350 +1.6 2.0 citrate transporter compare
BPHYT_RS31345 +1.6 2.4 malonate transporter compare
BPHYT_RS11980 +1.6 3.3 LysR family transcriptional regulator compare
BPHYT_RS27985 +1.6 1.8 LacI family transcriptional regulator compare
BPHYT_RS26490 +1.6 1.4 hypothetical protein compare
BPHYT_RS25165 +1.6 1.6 HTH-type transcriptional regulator BetI compare
BPHYT_RS21005 +1.6 1.3 asparaginase compare
BPHYT_RS36400 +1.6 0.9 hypothetical protein compare
BPHYT_RS11220 +1.6 2.3 LacI family transcriptional regulator compare
BPHYT_RS26525 +1.6 1.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS34530 +1.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS04715 +1.5 1.8 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS10475 +1.5 2.0 mammalian cell entry protein compare
BPHYT_RS30425 +1.5 1.7 LysR family transcriptional regulator compare
BPHYT_RS34740 +1.5 1.7 hypothetical protein compare
BPHYT_RS27445 +1.5 3.1 hypothetical protein compare
BPHYT_RS20590 +1.5 1.5 methionine sulfoxide reductase A compare
BPHYT_RS03785 +1.5 1.6 IclR family transcriptional regulator compare
BPHYT_RS26705 +1.5 2.1 hypothetical protein compare
BPHYT_RS31515 +1.5 1.5 agmatinase compare
BPHYT_RS33260 +1.5 3.0 hypothetical protein compare
BPHYT_RS35275 +1.5 1.6 acetyltransferase compare
BPHYT_RS27865 +1.5 1.8 ATPase compare
BPHYT_RS28805 +1.5 2.3 glyoxalase compare
BPHYT_RS01425 +1.5 1.7 3-phosphoglycerate dehydrogenase compare
BPHYT_RS03255 +1.4 1.7 glutathione S-transferase compare
BPHYT_RS33845 +1.4 3.0 bacteriocin production protein compare
BPHYT_RS02755 +1.4 1.0 cyd operon protein YbgT compare
BPHYT_RS05405 +1.4 1.8 GCN5 family acetyltransferase compare
BPHYT_RS24495 +1.4 2.5 transcriptional regulator compare
BPHYT_RS07515 +1.4 1.9 photosystem reaction center subunit H compare
BPHYT_RS16470 +1.4 6.2 DeoR faimly transcriptional regulator compare
BPHYT_RS27165 +1.4 2.2 4-carboxymuconolactone decarboxylase compare
BPHYT_RS15105 +1.4 3.1 FAD-dependent oxidoreductase compare
BPHYT_RS00725 +1.4 1.3 hypothetical protein compare
BPHYT_RS35850 +1.4 2.7 hypothetical protein compare
BPHYT_RS18590 +1.4 0.8 hypothetical protein compare
BPHYT_RS00885 +1.4 2.6 chemotaxis protein CheY compare
BPHYT_RS15090 +1.4 2.2 xanthine dehydrogenase accessory protein XdhC compare
BPHYT_RS28960 +1.4 1.3 histidine kinase compare
BPHYT_RS32230 +1.3 2.1 fatty acid desaturase compare
BPHYT_RS07845 +1.3 1.2 LysR family transcriptional regulator compare
BPHYT_RS21995 +1.3 3.5 (2Fe-2S)-binding protein compare
BPHYT_RS15490 +1.3 2.8 coproporphyrinogen III oxidase compare
BPHYT_RS35730 +1.3 1.3 hypothetical protein compare
BPHYT_RS00790 +1.3 1.5 conjugal transfer protein TraF compare
BPHYT_RS24625 +1.3 1.9 hypothetical protein compare
BPHYT_RS25540 +1.3 1.9 phosphohydrolase compare
BPHYT_RS19805 +1.3 4.7 chemotaxis protein CheW compare
BPHYT_RS21030 +1.3 1.6 ABC transporter ATP-binding protein compare
BPHYT_RS07130 +1.3 1.5 biopolymer transporter ExbD compare
BPHYT_RS15140 +1.3 1.3 beta-hydroxyacyl-ACP dehydratase compare
BPHYT_RS33165 +1.3 2.1 AraC family transcriptional regulator compare
BPHYT_RS25720 +1.3 3.5 hypothetical protein compare
BPHYT_RS30400 +1.3 1.9 amidohydrolase compare
BPHYT_RS17550 +1.3 2.3 molecular chaperone compare
BPHYT_RS05475 +1.3 2.3 hypothetical protein compare
BPHYT_RS19735 +1.3 2.1 hypothetical protein compare
BPHYT_RS09430 +1.3 1.8 membrane protein compare
BPHYT_RS35060 +1.2 1.9 glycosyl transferase compare
BPHYT_RS06515 +1.2 3.7 GDP-mannose-dependent alpha-mannosyltransferase compare
BPHYT_RS12940 +1.2 2.5 signal transduction histidine kinase compare
BPHYT_RS19785 +1.2 2.0 chemotaxis protein CheY compare
BPHYT_RS06605 +1.2 1.3 NAD(P)H quinone oxidoreductase compare
BPHYT_RS16700 +1.2 2.3 ABC transporter compare
BPHYT_RS30635 +1.2 2.3 D-aminopeptidase compare
BPHYT_RS10430 +1.2 1.8 glycosyl transferase family 1 compare
BPHYT_RS26005 +1.2 1.9 MarR family transcriptional regulator compare
BPHYT_RS08355 +1.2 1.7 hypothetical protein compare
BPHYT_RS22180 +1.2 3.0 hypothetical protein compare
BPHYT_RS13275 +1.2 2.2 methyltransferase compare
BPHYT_RS36180 +1.2 2.9 hypothetical protein compare
BPHYT_RS19955 +1.2 1.0 LysR family transcriptional regulator compare
BPHYT_RS03720 +1.2 2.0 malonic semialdehyde reductase compare
BPHYT_RS34500 +1.2 1.8 hypothetical protein compare
BPHYT_RS20995 +1.2 0.9 NUDIX hydrolase compare
BPHYT_RS25770 +1.2 1.5 hypothetical protein compare
BPHYT_RS18745 +1.2 2.5 coniferyl aldehyde dehydrogenase compare
BPHYT_RS08290 +1.2 1.4 acyl-CoA dehydrogenase compare
BPHYT_RS03665 +1.2 2.2 hypothetical protein compare
BPHYT_RS14510 +1.2 2.1 GCN5 family N-acetyltransferase compare
BPHYT_RS00670 +1.2 1.4 acyl-CoA dehydrogenase compare
BPHYT_RS24630 +1.1 1.7 (2Fe-2S)-binding protein compare
BPHYT_RS13200 +1.1 1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS10345 +1.1 0.9 flagellar motor protein MotB compare
BPHYT_RS23855 +1.1 1.8 hypothetical protein compare
BPHYT_RS09695 +1.1 2.0 hypothetical protein compare
BPHYT_RS34185 +1.1 1.4 cold-shock protein compare
BPHYT_RS18835 +1.1 1.3 flagellar biosynthesis protein FliR compare
BPHYT_RS24050 +1.1 1.4 amino acid ABC transporter compare
BPHYT_RS15115 +1.1 2.5 excinuclease ABC subunit A compare
BPHYT_RS13555 +1.1 1.4 acyl-CoA dehydrogenase compare
BPHYT_RS07740 +1.1 2.5 acetoacetate decarboxylase compare
BPHYT_RS13360 +1.1 2.0 aldehyde dehydrogenase compare
BPHYT_RS32210 +1.1 1.4 hypothetical protein compare
BPHYT_RS09710 +1.1 1.9 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS05610 +1.1 5.9 DNA-cytosine methyltransferase compare
BPHYT_RS08985 +1.1 1.8 Rrf2 family transcriptional regulator compare
BPHYT_RS11205 +1.1 3.8 LacI family transcription regulator compare
BPHYT_RS29150 +1.1 2.4 lysine transporter LysE compare
BPHYT_RS32200 +1.1 2.6 lytic transglycosylase compare
BPHYT_RS17030 +1.1 1.3 lipid hydroperoxide peroxidase compare
BPHYT_RS15180 +1.1 1.9 membrane protein compare
BPHYT_RS21615 +1.1 2.0 FMN-dependent NADH-azoreductase compare
BPHYT_RS34070 +1.1 2.1 histidine kinase compare
BPHYT_RS04760 +1.1 1.8 3-keto-5-aminohexanoate cleavage protein compare
BPHYT_RS01945 +1.1 2.0 hypothetical protein compare
BPHYT_RS09810 +1.1 1.3 hypothetical protein compare
BPHYT_RS27520 +1.1 1.2 membrane protein compare
BPHYT_RS31950 +1.1 1.3 short-chain dehydrogenase compare
BPHYT_RS07605 +1.1 1.9 hypothetical protein compare
BPHYT_RS02995 +1.1 1.2 2-methylcitrate dehydratase compare
BPHYT_RS28725 +1.1 2.3 oxidoreductase compare
BPHYT_RS10685 +1.1 1.2 LysR family transcriptional regulator compare
BPHYT_RS08270 +1.1 2.6 long-chain fatty acid--CoA ligase compare
BPHYT_RS33365 +1.1 1.5 PAS sensor protein compare
BPHYT_RS23555 +1.1 2.2 multidrug transporter compare
BPHYT_RS13210 +1.1 2.3 hypothetical protein compare
BPHYT_RS32130 +1.1 1.3 hypothetical protein compare
BPHYT_RS21170 +1.1 2.2 LysR family transcriptional regulator compare
BPHYT_RS31970 +1.1 2.4 cupin compare
BPHYT_RS08580 +1.1 1.7 ADP-ribose pyrophosphatase compare
BPHYT_RS11540 +1.1 0.9 ureidoglycolate hydrolase compare
BPHYT_RS18330 +1.1 2.4 phosphatidylethanolamine-binding protein compare
BPHYT_RS20285 +1.1 1.7 MFS transporter compare
BPHYT_RS30290 +1.1 2.3 MFS transporter compare
BPHYT_RS15275 +1.1 3.5 hypothetical protein compare
BPHYT_RS11650 +1.1 1.8 hypothetical protein compare
BPHYT_RS34655 +1.0 1.1 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS22020 +1.0 2.0 IclR family transcriptional regulator compare
BPHYT_RS28340 +1.0 2.0 indole acetimide hydrolase compare
BPHYT_RS36320 +1.0 1.5 type IV secretion system family protein compare
BPHYT_RS08135 +1.0 1.1 hypothetical protein compare
BPHYT_RS14245 +1.0 0.7 membrane protein compare
BPHYT_RS04645 +1.0 1.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days across organisms