Experiment set29S562 for Burkholderia phytofirmans PsJN
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Group: in plantaMedia: + Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Culturing: BFirm_ML3b, plate, at 20 (C), (Solid)
By: Marta Torres on 16-Mar
Specific Phenotypes
For 5 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alkanesulfonate assimilation | 1 |
| D-galactonate catabolism | 1 |
| NAD and NADP cofactor biosynthesis global | 1 |
| Quinolinic acid and its derivatives | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-galactonate degradation | 3 | 3 | 1 |
| NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde | 4 | 4 | 1 |
| NAD de novo biosynthesis II (from tryptophan) | 9 | 8 | 2 |
| L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde | 5 | 4 | 1 |
| 2-nitrobenzoate degradation I | 7 | 7 | 1 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 9 | 2 |
| L-glucose degradation | 7 | 3 | 1 |
| L-tryptophan degradation IX | 12 | 11 | 1 |
| L-tryptophan degradation XII (Geobacillus) | 12 | 11 | 1 |
| L-tryptophan degradation III (eukaryotic) | 15 | 10 | 1 |
| L-tryptophan degradation XI (mammalian, via kynurenine) | 23 | 11 | 1 |