Experiment set29S561 for Burkholderia phytofirmans PsJN
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Group: in plantaMedia: + Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Culturing: BFirm_ML3b, plate, at 20 (C), (Solid)
By: Marta Torres on 16-Mar
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ammonia assimilation | 1 |
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
| Inositol catabolism | 1 |
| Purine conversions | 1 |
| Queuosine-Archaeosine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Glycine, serine and threonine metabolism
- Inositol phosphate metabolism
- Nicotinate and nicotinamide metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| adenine and adenosine salvage II | 2 | 2 | 1 |
| guanine and guanosine salvage II | 2 | 2 | 1 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 5 | 2 |
| guanosine nucleotides degradation II | 4 | 4 | 1 |
| adenosine nucleotides degradation I | 8 | 7 | 2 |
| purine nucleotides degradation I (plants) | 12 | 10 | 3 |
| guanosine nucleotides degradation I | 4 | 3 | 1 |
| creatinine degradation I | 4 | 1 | 1 |
| creatinine degradation II | 5 | 2 | 1 |
| superpathway of purines degradation in plants | 18 | 14 | 3 |
| myo-inositol degradation I | 7 | 7 | 1 |
| glycine betaine degradation I | 8 | 6 | 1 |
| myo-, chiro- and scyllo-inositol degradation | 10 | 7 | 1 |