Experiment set29S536 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03150 -6.2 -11.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17690 -5.9 -8.1 imidazole glycerol phosphate synthase compare
BPHYT_RS17685 -5.6 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS18320 -5.6 -3.9 orotate phosphoribosyltransferase compare
BPHYT_RS06555 -5.3 -6.3 ketol-acid reductoisomerase compare
BPHYT_RS17670 -5.2 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33835 -5.1 -7.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS04955 -5.1 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS17680 -5.1 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS01595 -5.0 -14.0 homoserine O-acetyltransferase compare
BPHYT_RS02590 -4.9 -8.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14915 -4.9 -7.5 phosphoserine aminotransferase compare
BPHYT_RS16835 -4.9 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06545 -4.5 -6.2 acetolactate synthase compare
BPHYT_RS14050 -4.5 -7.2 UDP pyrophosphate phosphatase compare
BPHYT_RS16270 -4.5 -4.2 phosphoglycerate kinase compare
BPHYT_RS15915 -4.4 -9.4 ornithine carbamoyltransferase compare
BPHYT_RS15920 -4.4 -10.1 argininosuccinate synthase compare
BPHYT_RS06900 -4.3 -2.9 aspartate aminotransferase compare
BPHYT_RS14895 -4.2 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33865 -4.2 -8.0 tryptophan synthase alpha chain compare
BPHYT_RS17395 -4.2 -2.5 anthranilate synthase subunit II compare
BPHYT_RS33880 -4.2 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33875 -4.1 -7.3 tryptophan synthase subunit alpha compare
BPHYT_RS22420 -4.1 -1.4 membrane protein compare
BPHYT_RS12845 -4.0 -13.0 ATPase compare
BPHYT_RS33900 -4.0 -11.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS08955 -4.0 -2.7 homoserine dehydrogenase compare
BPHYT_RS33645 -3.8 -2.6 homoserine kinase compare
BPHYT_RS33915 -3.8 -7.2 isopropylmalate isomerase compare
BPHYT_RS17675 -3.7 -2.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17855 -3.7 -17.0 glutamate synthase compare
BPHYT_RS18705 -3.7 -2.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS14910 -3.6 -10.7 chorismate mutase compare
BPHYT_RS17945 -3.5 -2.4 cytochrome C biogenesis protein compare
BPHYT_RS16905 -3.4 -4.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17715 -3.4 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS13705 -3.4 -3.0 chorismate synthase compare
BPHYT_RS17885 -3.4 -5.5 3-dehydroquinate synthase compare
BPHYT_RS05010 -3.3 -4.5 RpiR family transcriptional regulator compare
BPHYT_RS02690 -3.3 -13.3 protoheme IX farnesyltransferase compare
BPHYT_RS17400 -3.2 -8.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS03135 -3.2 -10.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02610 -3.2 -5.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16735 -3.2 -8.2 phosphogluconate dehydratase compare
BPHYT_RS02045 -3.1 -5.5 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS35885 -3.1 -6.6 hypothetical protein compare
BPHYT_RS02955 -3.0 -10.6 formyltetrahydrofolate deformylase compare
BPHYT_RS31910 -3.0 -1.5 hypothetical protein compare
BPHYT_RS17890 -3.0 -1.7 shikimate kinase compare
BPHYT_RS17265 -3.0 -1.4 cell division protein compare
BPHYT_RS05960 -2.9 -6.9 endoribonuclease L-PSP compare
BPHYT_RS09500 -2.9 -4.3 glucose-6-phosphate isomerase compare
BPHYT_RS14865 -2.8 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS17390 -2.8 -18.1 anthranilate synthase subunit I compare
BPHYT_RS02525 -2.8 -8.1 membrane protein compare
BPHYT_RS17700 -2.8 -4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS02860 -2.8 -0.9 membrane protein compare
BPHYT_RS12530 -2.7 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33840 -2.7 -4.8 amidophosphoribosyltransferase compare
BPHYT_RS11390 -2.7 -11.4 penicillin-binding protein 1A compare
BPHYT_RS14400 -2.7 -4.1 anti-sigma factor compare
BPHYT_RS12150 -2.7 -13.5 PII uridylyl-transferase compare
BPHYT_RS04080 -2.6 -4.5 chloride channel protein compare
BPHYT_RS17405 -2.6 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS10100 -2.6 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS18590 -2.6 -0.9 hypothetical protein compare
BPHYT_RS14245 -2.5 -1.2 membrane protein compare
BPHYT_RS16085 -2.5 -4.8 DeoR faimly transcriptional regulator compare
BPHYT_RS14900 -2.5 -2.6 prephenate dehydrogenase compare
BPHYT_RS18655 -2.5 -3.7 3-oxoacyl-ACP synthase compare
BPHYT_RS18760 -2.5 -2.8 flagellar biosynthesis protein FliT compare
BPHYT_RS25780 -2.4 -0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS17520 -2.4 -3.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16435 -2.4 -13.6 alcohol dehydrogenase compare
BPHYT_RS08245 -2.4 -6.3 anti-sigma factor compare
BPHYT_RS02665 -2.3 -11.1 MFS transporter compare
BPHYT_RS26685 -2.3 -1.1 precorrin-8X methylmutase compare
BPHYT_RS16245 -2.3 -2.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16210 -2.3 -3.6 peptidase compare
BPHYT_RS16430 -2.3 -15.2 cytochrome C compare
BPHYT_RS33920 -2.3 -4.5 type II citrate synthase compare
BPHYT_RS16710 -2.3 -1.1 LysR family transcriptional regulator compare
BPHYT_RS08960 -2.3 -1.3 threonine synthase compare
BPHYT_RS06550 -2.2 -2.4 acetolactate synthase compare
BPHYT_RS11805 -2.1 -2.0 hypothetical protein compare
BPHYT_RS03685 -2.1 -3.3 Tol system periplasmic component YbgF compare
BPHYT_RS05030 -2.1 -2.9 sugar ABC transporter permease compare
BPHYT_RS06410 -2.1 -3.1 transcriptional regulator compare
BPHYT_RS06045 -2.1 -6.8 transaldolase compare
BPHYT_RS22205 -2.1 -3.2 hypothetical protein compare
BPHYT_RS06155 -2.1 -5.8 DEAD/DEAH box helicase compare
BPHYT_RS31050 -2.1 -1.0 epimerase compare
BPHYT_RS16345 -2.0 -3.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06405 -2.0 -3.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS17380 -2.0 -9.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS01500 -2.0 -13.1 7-cyano-7-deazaguanine synthase compare
BPHYT_RS36300 -2.0 -8.9 hypothetical protein compare
BPHYT_RS20935 -2.0 -3.4 dehydrogenase compare
BPHYT_RS05485 -2.0 -3.7 nitrogen regulatory protein P-II 1 compare
BPHYT_RS06065 -2.0 -8.9 cytochrome C compare
BPHYT_RS35495 -1.9 -1.8 nucleotide pyrophosphohydrolase compare
BPHYT_RS06070 -1.9 -8.8 cytochrome C compare
BPHYT_RS10400 -1.9 -0.9 taurine ABC transporter permease compare
BPHYT_RS04335 -1.9 -1.5 membrane protein compare
BPHYT_RS16340 -1.9 -4.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS15465 -1.9 -3.5 tRNA-Gly compare
BPHYT_RS06975 -1.9 -1.2 glutamate racemase compare
BPHYT_RS23570 -1.8 -4.9 chemotaxis protein CheY compare
BPHYT_RS03655 -1.8 -1.5 membrane protein compare
BPHYT_RS10240 -1.8 -1.0 translation initiation inhibitor compare
BPHYT_RS06530 -1.8 -1.1 membrane protein compare
BPHYT_RS11980 -1.8 -2.6 LysR family transcriptional regulator compare
BPHYT_RS17095 -1.8 -2.0 proline--tRNA ligase compare
BPHYT_RS14190 -1.8 -3.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS09315 -1.8 -0.6 chemotaxis protein CheY compare
BPHYT_RS26185 -1.8 -0.8 thioesterase compare
BPHYT_RS03400 -1.8 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS16840 -1.8 -1.2 transketolase compare
BPHYT_RS19320 -1.7 -6.2 glycine cleavage system protein T compare
BPHYT_RS06610 -1.7 -1.1 triosephosphate isomerase compare
BPHYT_RS02650 -1.7 -1.4 membrane protein compare
BPHYT_RS12465 -1.7 -1.6 inositol monophosphatase compare
BPHYT_RS06540 -1.7 -6.0 RNA polymerase sigma70 factor compare
BPHYT_RS33610 -1.7 -1.3 DNA polymerase I compare
BPHYT_RS11765 -1.7 -1.0 polyamine ABC transporter permease compare
BPHYT_RS25095 -1.7 -2.2 AraC family transcriptional regulator compare
BPHYT_RS30085 -1.7 -1.1 hypothetical protein compare
BPHYT_RS25870 -1.7 -0.8 type III secretion system ATPase compare
BPHYT_RS08125 -1.7 -7.7 ATPase compare
BPHYT_RS25025 -1.7 -3.1 acyl-CoA dehydrogenase compare
BPHYT_RS24315 -1.6 -1.6 phosphoribosyltransferase compare
BPHYT_RS12060 -1.6 -1.0 hypothetical protein compare
BPHYT_RS17100 -1.6 -3.7 RNA pyrophosphohydrolase compare
BPHYT_RS02975 -1.6 -1.1 membrane protein compare
BPHYT_RS05020 -1.6 -4.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS18965 -1.6 -1.8 chemotaxis protein CheY compare
BPHYT_RS22200 -1.6 -3.0 cardiolipin synthetase compare
BPHYT_RS02675 -1.6 -7.6 hypothetical protein compare
BPHYT_RS28595 -1.6 -1.0 glyoxalase compare
BPHYT_RS10750 -1.6 -1.0 LysR family transcriptional regulator compare
BPHYT_RS14275 -1.5 -2.0 hypothetical protein compare
BPHYT_RS16020 -1.5 -2.1 AsnC family transcriptional regulator compare
BPHYT_RS23170 -1.5 -1.7 XRE family transcriptional regulator compare
BPHYT_RS15620 -1.5 -2.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS21735 -1.5 -3.7 IclR family transcriptional regulator compare
BPHYT_RS04720 -1.5 -2.5 transcriptional regulator compare
BPHYT_RS06345 -1.5 -5.4 sensor histidine kinase compare
BPHYT_RS19340 -1.5 -8.6 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS13245 -1.5 -4.1 hypothetical protein compare
BPHYT_RS27890 -1.5 -0.9 hypothetical protein compare
BPHYT_RS01510 -1.5 -7.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS02640 -1.5 -8.5 cytochrome C oxidase compare
BPHYT_RS10040 -1.5 -0.9 hypothetical protein compare
BPHYT_RS02685 -1.5 -8.8 cytochrome C oxidase subunit I compare
BPHYT_RS29870 -1.5 -1.5 2-dehydropantoate 2-reductase compare
BPHYT_RS14855 -1.5 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS30295 -1.5 -1.6 acyl-CoA dehydrogenase compare
BPHYT_RS08765 -1.5 -0.7 ABC transporter ATP-binding protein compare
BPHYT_RS05040 -1.5 -3.3 sugar ABC transporter ATPase compare
BPHYT_RS26390 -1.5 -0.7 antibiotic resistance protein compare
BPHYT_RS30915 -1.5 -1.5 hypothetical protein compare
BPHYT_RS30140 -1.4 -1.2 3-methylitaconate isomerase compare
BPHYT_RS16990 -1.4 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS24580 -1.4 -1.1 hypothetical protein compare
BPHYT_RS14790 -1.4 -4.1 D-amino acid dehydrogenase compare
BPHYT_RS27155 -1.4 -1.3 peroxiredoxin compare
BPHYT_RS17760 -1.4 -5.7 ABC transporter permease compare
BPHYT_RS09480 -1.4 -0.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03410 -1.4 -1.9 queuine tRNA-ribosyltransferase compare
BPHYT_RS17075 -1.4 -2.9 ABC transporter permease compare
BPHYT_RS31855 -1.4 -5.0 FAD-linked oxidase compare
BPHYT_RS24500 -1.4 -0.8 histidine kinase compare
BPHYT_RS18995 -1.4 -4.8 purine-binding chemotaxis protein compare
BPHYT_RS29330 -1.4 -2.7 acetyltransferase compare
BPHYT_RS05705 -1.4 -0.8 hypothetical protein compare
BPHYT_RS23250 -1.4 -1.4 hypothetical protein compare
BPHYT_RS33655 -1.4 -3.5 MarR family transcriptional regulator compare
BPHYT_RS05025 -1.4 -3.9 sugar ABC transporter substrate-binding protein compare
BPHYT_RS16075 -1.4 -8.8 D-arabinitol 4-dehydrogenase compare
BPHYT_RS33175 -1.4 -1.5 hypothetical protein compare
BPHYT_RS33185 -1.4 -4.8 methyltransferase type 11 compare
BPHYT_RS28405 -1.4 -2.3 membrane protein compare
BPHYT_RS25540 -1.4 -2.2 phosphohydrolase compare
BPHYT_RS30750 -1.4 -1.3 GntR family transcriptional regulator compare
BPHYT_RS17445 -1.4 -3.1 GTP-binding protein YchF compare
BPHYT_RS03495 -1.3 -3.3 hypothetical protein compare
BPHYT_RS27030 -1.3 -1.0 transcriptional regulator compare
BPHYT_RS29920 -1.3 -0.6 hypothetical protein compare
BPHYT_RS28890 -1.3 -2.8 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BPHYT_RS03645 -1.3 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS01685 -1.3 -7.7 phytanoyl-CoA dioxygenase compare
BPHYT_RS27875 -1.3 -2.4 CreA family protein compare
BPHYT_RS23455 -1.3 -0.8 phosphorylase compare
BPHYT_RS09905 -1.3 -1.1 hypothetical protein compare
BPHYT_RS36400 -1.3 -1.2 hypothetical protein compare
BPHYT_RS02905 -1.3 -9.7 RNA polymerase subunit sigma-54 compare
BPHYT_RS08950 -1.3 -4.7 aminotransferase compare
BPHYT_RS05905 -1.3 -1.0 hypothetical protein compare
BPHYT_RS01585 -1.3 -5.6 major facilitator superfamily protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms