Experiment set29S536 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS31840 +2.3 6.3 anhydrase compare
BPHYT_RS27865 +2.2 3.4 ATPase compare
BPHYT_RS27580 +2.2 9.4 F0F1 ATP synthase subunit alpha compare
BPHYT_RS02965 +2.1 5.6 membrane protein compare
BPHYT_RS25020 +2.1 3.6 phospholipid-binding protein compare
BPHYT_RS34430 +2.0 3.2 2-keto-4-pentenoate hydratase compare
BPHYT_RS01435 +1.9 16.1 LysR family transcriptional regulator compare
BPHYT_RS13200 +1.8 2.2 molybdopterin binding oxidoreductase compare
BPHYT_RS35730 +1.8 4.7 hypothetical protein compare
BPHYT_RS23370 +1.8 3.5 glycosyl transferase family 1 compare
BPHYT_RS33515 +1.8 5.6 porin compare
BPHYT_RS24095 +1.8 5.9 membrane protein compare
BPHYT_RS26290 +1.7 4.4 photosystem reaction center subunit H compare
BPHYT_RS05570 +1.7 4.0 hypothetical protein compare
BPHYT_RS16855 +1.7 13.5 16S rRNA methyltransferase compare
BPHYT_RS28480 +1.7 1.7 hydroxyglutarate oxidase compare
BPHYT_RS35275 +1.7 3.1 acetyltransferase compare
BPHYT_RS16290 +1.6 1.8 hypothetical protein compare
BPHYT_RS29345 +1.6 3.6 lipoyl synthase compare
BPHYT_RS23225 +1.6 2.3 hypothetical protein compare
BPHYT_RS24075 +1.6 7.1 ATPase compare
BPHYT_RS25950 +1.6 2.5 sensor histidine kinase compare
BPHYT_RS20070 +1.6 3.2 hypothetical protein compare
BPHYT_RS22525 +1.5 3.7 dioxygenase compare
BPHYT_RS06990 +1.5 1.9 membrane protein compare
BPHYT_RS24565 +1.5 2.9 membrane protein compare
BPHYT_RS10070 +1.5 2.8 hypothetical protein compare
BPHYT_RS05725 +1.5 5.4 hypothetical protein compare
BPHYT_RS09895 +1.5 2.3 LysR family transcriptional regulator compare
BPHYT_RS28245 +1.5 2.9 MFS transporter compare
BPHYT_RS23175 +1.5 2.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS29040 +1.5 5.2 diguanylate cyclase compare
BPHYT_RS05610 +1.5 11.2 DNA-cytosine methyltransferase compare
BPHYT_RS30040 +1.4 1.7 hypothetical protein compare
BPHYT_RS24410 +1.4 4.5 type VI secretion protein compare
BPHYT_RS21595 +1.4 2.2 TetR family transcriptional regulator compare
BPHYT_RS00115 +1.4 1.6 acetaldehyde dehydrogenase compare
BPHYT_RS31950 +1.4 1.8 short-chain dehydrogenase compare
BPHYT_RS30365 +1.4 1.4 beta-lactamase compare
BPHYT_RS10980 +1.4 4.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS16335 +1.4 1.8 membrane protein compare
BPHYT_RS11275 +1.4 2.4 hypothetical protein compare
BPHYT_RS25970 +1.4 1.3 urea amidolyase compare
BPHYT_RS33535 +1.3 9.6 RNA polymerase sigma factor RpoD compare
BPHYT_RS21340 +1.3 2.6 2OG-Fe(II) oxygenase compare
BPHYT_RS06985 +1.3 8.1 fumarate hydratase compare
BPHYT_RS31320 +1.3 2.1 hypothetical protein compare
BPHYT_RS22560 +1.3 6.9 flagellar transcriptional regulator FlhD compare
BPHYT_RS31225 +1.3 2.8 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS01790 +1.3 6.6 LuxR family transcriptional regulator compare
BPHYT_RS12265 +1.3 1.1 alanine acetyltransferase compare
BPHYT_RS29520 +1.3 1.2 hypothetical protein compare
BPHYT_RS20425 +1.3 1.9 hypothetical protein compare
BPHYT_RS28370 +1.2 1.2 peroxidase compare
BPHYT_RS30100 +1.2 1.6 copper oxidase compare
BPHYT_RS14125 +1.2 1.6 transcriptional regulator compare
BPHYT_RS10470 +1.2 2.3 hypothetical protein compare
BPHYT_RS11215 +1.2 5.5 ribose ABC transporter ATPase compare
BPHYT_RS35160 +1.2 2.3 PKHD-type hydroxylase compare
BPHYT_RS21725 +1.2 1.1 taurine ABC transporter substrate-binding protein compare
BPHYT_RS30340 +1.2 2.0 AraC family transcriptional regulator compare
BPHYT_RS15360 +1.2 2.2 hypothetical protein compare
BPHYT_RS30825 +1.2 1.5 extradiol dioxygenase compare
BPHYT_RS11310 +1.2 1.4 LysR family transcriptional regulator compare
BPHYT_RS10565 +1.2 1.8 NADP oxidoreductase compare
BPHYT_RS05795 +1.2 2.7 hypothetical protein compare
BPHYT_RS27705 +1.2 2.8 universal stress protein A compare
BPHYT_RS15290 +1.2 2.8 tRNA-Arg compare
BPHYT_RS32290 +1.2 1.6 hypothetical protein compare
BPHYT_RS09135 +1.1 3.1 ribosomal large subunit pseudouridine synthase D compare
BPHYT_RS23930 +1.1 1.7 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS05130 +1.1 4.5 hypothetical protein compare
BPHYT_RS18795 +1.1 2.0 flagellar export protein FliJ compare
BPHYT_RS04675 +1.1 5.0 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS33070 +1.1 1.8 haloacid dehalogenase compare
BPHYT_RS13605 +1.1 0.9 tRNA-Pro compare
BPHYT_RS10845 +1.1 3.2 UbiD family decarboxylase compare
BPHYT_RS24135 +1.1 2.3 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS23830 +1.1 1.8 acetyl-CoA hydrolase compare
BPHYT_RS31630 +1.1 1.6 hypothetical protein compare
BPHYT_RS07165 +1.1 1.9 peptide ABC transporter permease compare
BPHYT_RS28075 +1.1 1.0 cytochrome B561 compare
BPHYT_RS32675 +1.1 1.3 2-methylcitrate dehydratase compare
BPHYT_RS20940 +1.1 1.2 citrate synthase compare
BPHYT_RS19025 +1.0 3.2 transcriptional regulator compare
BPHYT_RS08615 +1.0 1.2 hypothetical protein compare
BPHYT_RS18865 +1.0 1.6 flagellar L-ring protein FlgH compare
BPHYT_RS31305 +1.0 1.4 alcohol dehydrogenase compare
BPHYT_RS25445 +1.0 1.9 alkyl hydroperoxide reductase compare
BPHYT_RS29245 +1.0 2.2 peptidase M23 compare
BPHYT_RS20440 +1.0 1.1 IclR family transcriptional regulator compare
BPHYT_RS28365 +1.0 1.5 Germin subfamily 1 member 15 compare
BPHYT_RS16470 +1.0 3.7 DeoR faimly transcriptional regulator compare
BPHYT_RS33630 +1.0 2.1 chromate transporter compare
BPHYT_RS30930 +1.0 4.2 PAS/PAC sensor signal transduction histidine kinase compare
BPHYT_RS08665 +1.0 0.8 hypothetical protein compare
BPHYT_RS07255 +1.0 2.2 4-oxalocrotonate decarboxylase compare
BPHYT_RS01170 +1.0 1.6 hypothetical protein compare
BPHYT_RS23350 +1.0 2.2 NAD-dependent epimerase/dehydratase compare
BPHYT_RS21505 +1.0 1.5 amidohydrolase compare
BPHYT_RS36295 +1.0 7.0 hypothetical protein compare
BPHYT_RS20960 +1.0 2.9 dihydrofolate reductase compare
BPHYT_RS26955 +1.0 1.1 succinylglutamate desuccinylase compare
BPHYT_RS09780 +1.0 3.4 polysaccharide biosynthesis protein compare
BPHYT_RS26055 +1.0 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS34270 +1.0 3.7 LysR family transcriptional regulator compare
BPHYT_RS13665 +1.0 3.9 alpha/beta hydrolase compare
BPHYT_RS34900 +1.0 3.0 hypothetical protein compare
BPHYT_RS07340 +0.9 2.3 glyoxalase compare
BPHYT_RS35670 +0.9 1.7 bicyclomycin resistance protein compare
BPHYT_RS04500 +0.9 1.2 urease accessory protein UreF compare
BPHYT_RS36310 +0.9 5.3 hypothetical protein compare
BPHYT_RS11610 +0.9 1.7 peroxiredoxin compare
BPHYT_RS32240 +0.9 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS12785 +0.9 2.5 Rrf2 family transcriptional regulator compare
BPHYT_RS09150 +0.9 3.1 acetyl-CoA acetyltransferase compare
BPHYT_RS03090 +0.9 1.2 hypothetical protein compare
BPHYT_RS21855 +0.9 2.2 hypothetical protein compare
BPHYT_RS35800 +0.9 1.7 TetR family transcriptional regulator compare
BPHYT_RS02625 +0.9 3.6 competence protein ComF compare
BPHYT_RS24115 +0.9 3.6 epimerase compare
BPHYT_RS36305 +0.9 5.9 hypothetical protein compare
BPHYT_RS26855 +0.9 1.6 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS03900 +0.9 0.9 phospholipid-binding protein compare
BPHYT_RS24350 +0.9 1.8 hypothetical protein compare
BPHYT_RS27295 +0.9 1.0 hypothetical protein compare
BPHYT_RS09560 +0.9 1.3 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS09000 +0.9 1.1 competence protein ComE compare
BPHYT_RS03500 +0.9 4.8 glycolate oxidase compare
BPHYT_RS22840 +0.9 2.4 motility protein B compare
BPHYT_RS18945 +0.9 4.8 flagellar biosynthesis protein FlhB compare
BPHYT_RS32200 +0.9 0.9 lytic transglycosylase compare
BPHYT_RS10760 +0.9 1.7 major facilitator transporter compare
BPHYT_RS31635 +0.9 1.6 choline dehydrogenase compare
BPHYT_RS30460 +0.9 2.7 glycerate dehydrogenase compare
BPHYT_RS22850 +0.9 1.7 thioredoxin compare
BPHYT_RS31900 +0.9 1.7 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS03745 +0.9 3.8 cleavage protein compare
BPHYT_RS04965 +0.9 5.3 ATP-binding protein compare
BPHYT_RS13285 +0.9 1.4 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS05365 +0.9 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS32475 +0.9 1.3 dihydroxyacetone kinase compare
BPHYT_RS25005 +0.9 1.0 FMN reductase compare
BPHYT_RS10035 +0.9 2.9 DSBA oxidoreductase compare
BPHYT_RS36545 +0.9 3.7 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS30350 +0.9 2.0 LysR family transcriptional regulator compare
BPHYT_RS13125 +0.9 2.5 ABC transporter ATP-binding protein compare
BPHYT_RS22910 +0.9 0.8 hypothetical protein compare
BPHYT_RS01165 +0.9 2.8 hypothetical protein compare
BPHYT_RS10875 +0.9 1.3 transporter compare
BPHYT_RS04625 +0.8 1.9 urea ABC transporter ATP-binding protein compare
BPHYT_RS11965 +0.8 2.2 alkylhydroperoxidase compare
BPHYT_RS28085 +0.8 2.3 Fis family transcriptional regulator compare
BPHYT_RS18855 +0.8 3.6 flagellar rod assembly protein FlgJ compare
BPHYT_RS27305 +0.8 1.1 hypothetical protein compare
BPHYT_RS25335 +0.8 0.5 hypothetical protein compare
BPHYT_RS25520 +0.8 1.2 TetR family transcriptional regulator compare
BPHYT_RS33795 +0.8 1.4 4-alpha-glucanotransferase compare
BPHYT_RS09875 +0.8 1.6 aldehyde dehydrogenase compare
BPHYT_RS28830 +0.8 0.8 LysR family transcriptional regulator compare
BPHYT_RS20055 +0.8 1.8 hypothetical protein compare
BPHYT_RS25615 +0.8 1.2 alkyl hydroperoxide reductase compare
BPHYT_RS28945 +0.8 2.2 endo-1,4-D-glucanase compare
BPHYT_RS04910 +0.8 1.2 phenylacetic acid degradation protein compare
BPHYT_RS21480 +0.8 1.3 hypothetical protein compare
BPHYT_RS10465 +0.8 1.7 hypothetical protein compare
BPHYT_RS07040 +0.8 1.4 asparaginase compare
BPHYT_RS28205 +0.8 1.7 ATPase compare
BPHYT_RS16250 +0.8 0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS12320 +0.8 1.9 AraC family transcriptional regulator compare
BPHYT_RS11970 +0.8 0.9 cupin compare
BPHYT_RS24910 +0.8 5.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01035 +0.8 2.1 cyanate hydratase compare
BPHYT_RS33890 +0.8 4.3 fimbrial protein FimV compare
BPHYT_RS14015 +0.8 1.9 hypothetical protein compare
BPHYT_RS07475 +0.8 1.1 nitrate reductase compare
BPHYT_RS21860 +0.8 1.2 hypothetical protein compare
BPHYT_RS26705 +0.8 2.3 hypothetical protein compare
BPHYT_RS29425 +0.8 2.0 IclR family transcriptional regulator compare
BPHYT_RS02970 +0.8 6.3 excinuclease ABC subunit A compare
BPHYT_RS25560 +0.8 1.1 RNA polymerase sigma factor compare
BPHYT_RS35165 +0.8 3.8 peptidase compare
BPHYT_RS01315 +0.8 1.7 cupin compare
BPHYT_RS24220 +0.8 1.3 alpha/beta hydrolase compare
BPHYT_RS18910 +0.8 1.0 FlgN compare
BPHYT_RS33045 +0.8 1.1 response regulator receiver protein compare
BPHYT_RS14060 +0.8 1.1 peptidase M23 compare
BPHYT_RS31890 +0.8 0.8 transposase compare
BPHYT_RS36555 +0.8 5.6 hypothetical protein compare
BPHYT_RS32145 +0.8 3.2 type IV secretory pathway protein VirD4 compare
BPHYT_RS31020 +0.8 1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS07210 +0.8 1.2 permease compare
BPHYT_RS30280 +0.8 1.6 hypothetical protein compare
BPHYT_RS33125 +0.8 1.2 hypothetical protein compare
BPHYT_RS29640 +0.8 1.4 NAD-dependent deacetylase compare
BPHYT_RS21190 +0.8 2.9 phospholipase C compare
BPHYT_RS22320 +0.8 1.7 hypothetical protein compare
BPHYT_RS05215 +0.8 2.7 DNA-binding protein compare
BPHYT_RS22015 +0.7 1.3 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS22295 +0.7 0.8 LysR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms