Experiment set29S535 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.5 -4.4 phosphoglycerate kinase compare
BPHYT_RS17690 -5.8 -5.7 imidazole glycerol phosphate synthase compare
BPHYT_RS03150 -5.8 -10.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06555 -5.4 -3.8 ketol-acid reductoisomerase compare
BPHYT_RS17685 -5.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14915 -5.1 -6.0 phosphoserine aminotransferase compare
BPHYT_RS33875 -4.9 -6.7 tryptophan synthase subunit alpha compare
BPHYT_RS18320 -4.8 -5.7 orotate phosphoribosyltransferase compare
BPHYT_RS15920 -4.8 -6.5 argininosuccinate synthase compare
BPHYT_RS17675 -4.8 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33835 -4.6 -7.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS01595 -4.5 -10.3 homoserine O-acetyltransferase compare
BPHYT_RS16835 -4.4 -7.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33900 -4.3 -8.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS14910 -4.2 -12.2 chorismate mutase compare
BPHYT_RS33865 -4.2 -5.0 tryptophan synthase alpha chain compare
BPHYT_RS12845 -4.2 -10.1 ATPase compare
BPHYT_RS17885 -4.1 -2.8 3-dehydroquinate synthase compare
BPHYT_RS17680 -4.0 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16905 -4.0 -2.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06545 -3.9 -7.0 acetolactate synthase compare
BPHYT_RS22420 -3.9 -1.3 membrane protein compare
BPHYT_RS14895 -3.8 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33880 -3.8 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17855 -3.8 -14.3 glutamate synthase compare
BPHYT_RS02045 -3.8 -4.2 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS18655 -3.8 -4.5 3-oxoacyl-ACP synthase compare
BPHYT_RS17400 -3.8 -6.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS17395 -3.8 -2.2 anthranilate synthase subunit II compare
BPHYT_RS08955 -3.7 -2.6 homoserine dehydrogenase compare
BPHYT_RS35885 -3.7 -4.8 hypothetical protein compare
BPHYT_RS17405 -3.7 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS15915 -3.6 -9.2 ornithine carbamoyltransferase compare
BPHYT_RS13705 -3.5 -3.4 chorismate synthase compare
BPHYT_RS33915 -3.4 -7.9 isopropylmalate isomerase compare
BPHYT_RS02610 -3.3 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02590 -3.3 -6.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18705 -3.3 -1.9 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17390 -3.3 -14.8 anthranilate synthase subunit I compare
BPHYT_RS16710 -3.3 -1.1 LysR family transcriptional regulator compare
BPHYT_RS06900 -3.2 -3.1 aspartate aminotransferase compare
BPHYT_RS23250 -3.1 -1.5 hypothetical protein compare
BPHYT_RS02005 -2.9 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS04335 -2.9 -1.7 membrane protein compare
BPHYT_RS18760 -2.9 -2.0 flagellar biosynthesis protein FliT compare
BPHYT_RS04720 -2.8 -5.0 transcriptional regulator compare
BPHYT_RS14900 -2.8 -2.3 prephenate dehydrogenase compare
BPHYT_RS04955 -2.8 -1.6 methionyl-tRNA synthetase compare
BPHYT_RS17945 -2.8 -2.1 cytochrome C biogenesis protein compare
BPHYT_RS33610 -2.7 -1.3 DNA polymerase I compare
BPHYT_RS00690 -2.6 -1.3 transcriptional regulator compare
BPHYT_RS17715 -2.6 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17890 -2.6 -1.5 shikimate kinase compare
BPHYT_RS01455 -2.6 -1.2 peptide deformylase compare
BPHYT_RS17670 -2.6 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02690 -2.6 -9.7 protoheme IX farnesyltransferase compare
BPHYT_RS02860 -2.5 -0.8 membrane protein compare
BPHYT_RS10215 -2.5 -1.2 sulfate transporter compare
BPHYT_RS16735 -2.4 -4.5 phosphogluconate dehydratase compare
BPHYT_RS12530 -2.4 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS02595 -2.4 -1.1 sulfurtransferase compare
BPHYT_RS33840 -2.3 -3.9 amidophosphoribosyltransferase compare
BPHYT_RS18590 -2.3 -0.8 hypothetical protein compare
BPHYT_RS33920 -2.3 -3.1 type II citrate synthase compare
BPHYT_RS20845 -2.3 -1.6 peroxidase compare
BPHYT_RS27085 -2.3 -1.3 alkylhydroperoxidase compare
BPHYT_RS03135 -2.2 -9.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS22860 -2.2 -1.1 chemotaxis protein CheY compare
BPHYT_RS20130 -2.2 -1.9 diguanylate phosphodiesterase compare
BPHYT_RS16180 -2.1 -1.0 TetR family transcriptional regulator compare
BPHYT_RS26685 -2.1 -1.0 precorrin-8X methylmutase compare
BPHYT_RS02665 -2.1 -11.6 MFS transporter compare
BPHYT_RS16085 -2.1 -3.6 DeoR faimly transcriptional regulator compare
BPHYT_RS26355 -2.1 -1.0 hypothetical protein compare
BPHYT_RS11765 -2.1 -1.0 polyamine ABC transporter permease compare
BPHYT_RS28410 -2.1 -2.0 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS05960 -2.1 -4.9 endoribonuclease L-PSP compare
BPHYT_RS35770 -2.1 -1.0 glyoxalase compare
BPHYT_RS03645 -2.0 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS08960 -2.0 -1.2 threonine synthase compare
BPHYT_RS25395 -2.0 -1.6 3-oxoacyl-ACP reductase compare
BPHYT_RS36300 -2.0 -10.4 hypothetical protein compare
BPHYT_RS16340 -2.0 -3.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS22940 -2.0 -1.3 pilus assembly protein TadE compare
BPHYT_RS29855 -2.0 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS26080 -2.0 -1.0 ABC transporter ATPase compare
BPHYT_RS28685 -2.0 -1.8 GntR family transcriptional regulator compare
BPHYT_RS05905 -2.0 -1.3 hypothetical protein compare
BPHYT_RS26045 -2.0 -2.5 ABC transporter permease compare
BPHYT_RS02760 -1.9 -0.9 cytochrome BD oxidase subunit II compare
BPHYT_RS22000 -1.9 -2.1 hypothetical protein compare
BPHYT_RS10040 -1.9 -0.9 hypothetical protein compare
BPHYT_RS17265 -1.9 -1.1 cell division protein compare
BPHYT_RS16435 -1.9 -9.7 alcohol dehydrogenase compare
BPHYT_RS36400 -1.9 -1.4 hypothetical protein compare
BPHYT_RS36275 -1.9 -1.7 hypothetical protein compare
BPHYT_RS17380 -1.9 -7.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS20900 -1.9 -2.3 phytanoyl-CoA dioxygenase compare
BPHYT_RS16245 -1.8 -2.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18965 -1.8 -1.7 chemotaxis protein CheY compare
BPHYT_RS06550 -1.8 -1.9 acetolactate synthase compare
BPHYT_RS23855 -1.8 -2.5 hypothetical protein compare
BPHYT_RS34410 -1.8 -1.2 hypothetical protein compare
BPHYT_RS12465 -1.8 -1.1 inositol monophosphatase compare
BPHYT_RS12615 -1.7 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS14400 -1.7 -2.4 anti-sigma factor compare
BPHYT_RS08125 -1.7 -7.1 ATPase compare
BPHYT_RS09690 -1.7 -1.0 phosphate starvation-inducible protein PsiF compare
BPHYT_RS06435 -1.7 -1.0 hypothetical protein compare
BPHYT_RS03280 -1.7 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS19920 -1.7 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09315 -1.7 -0.6 chemotaxis protein CheY compare
BPHYT_RS05330 -1.7 -1.6 phosphohydrolase compare
BPHYT_RS06065 -1.7 -7.9 cytochrome C compare
BPHYT_RS23455 -1.7 -0.8 phosphorylase compare
BPHYT_RS29840 -1.7 -1.0 polysaccharide biosynthesis protein compare
BPHYT_RS02525 -1.7 -5.9 membrane protein compare
BPHYT_RS17700 -1.7 -2.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS14190 -1.6 -1.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08950 -1.6 -5.9 aminotransferase compare
BPHYT_RS01500 -1.6 -11.5 7-cyano-7-deazaguanine synthase compare
BPHYT_RS16175 -1.6 -1.8 hemolysin D compare
BPHYT_RS04080 -1.6 -2.7 chloride channel protein compare
BPHYT_RS01965 -1.6 -1.1 tRNA-Ala compare
BPHYT_RS17520 -1.6 -2.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12150 -1.6 -10.1 PII uridylyl-transferase compare
BPHYT_RS20185 -1.6 -1.0 sugar transferase compare
BPHYT_RS05010 -1.6 -3.2 RpiR family transcriptional regulator compare
BPHYT_RS32225 -1.6 -1.5 hypothetical protein compare
BPHYT_RS16430 -1.6 -10.7 cytochrome C compare
BPHYT_RS03535 -1.6 -2.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS28905 -1.6 -1.2 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS06975 -1.6 -1.0 glutamate racemase compare
BPHYT_RS25095 -1.6 -1.3 AraC family transcriptional regulator compare
BPHYT_RS18610 -1.5 -7.0 lytic transglycosylase compare
BPHYT_RS26135 -1.5 -1.0 ABC transporter permease compare
BPHYT_RS08965 -1.5 -2.7 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS18970 -1.5 -9.3 chemotaxis protein compare
BPHYT_RS28635 -1.5 -2.2 hypothetical protein compare
BPHYT_RS25770 -1.5 -0.7 hypothetical protein compare
BPHYT_RS06405 -1.5 -2.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS34280 -1.5 -1.6 hypothetical protein compare
BPHYT_RS17445 -1.5 -2.8 GTP-binding protein YchF compare
BPHYT_RS27905 -1.5 -2.5 MFS transporter compare
BPHYT_RS10475 -1.5 -1.3 mammalian cell entry protein compare
BPHYT_RS10650 -1.5 -1.0 membrane protein compare
BPHYT_RS35400 -1.5 -2.7 ABC transporter compare
BPHYT_RS34675 -1.5 -3.6 DNA-binding protein compare
BPHYT_RS20695 -1.5 -1.3 ribokinase compare
BPHYT_RS28830 -1.5 -0.7 LysR family transcriptional regulator compare
BPHYT_RS00205 -1.5 -3.6 DeoR family transcriptional regulator compare
BPHYT_RS02955 -1.4 -6.1 formyltetrahydrofolate deformylase compare
BPHYT_RS06070 -1.4 -6.2 cytochrome C compare
BPHYT_RS05065 -1.4 -2.1 DNA mismatch repair protein MutS compare
BPHYT_RS20115 -1.4 -1.7 transcriptional regulator compare
BPHYT_RS13895 -1.4 -2.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS26225 -1.4 -1.3 hypothetical protein compare
BPHYT_RS18980 -1.4 -4.2 chemotaxis protein CheR compare
BPHYT_RS04135 -1.4 -1.8 glycosyl transferase family 1 compare
BPHYT_RS16840 -1.4 -1.0 transketolase compare
BPHYT_RS20775 -1.4 -2.5 3-ketoacyl-ACP reductase compare
BPHYT_RS02685 -1.4 -5.7 cytochrome C oxidase subunit I compare
BPHYT_RS16075 -1.4 -9.0 D-arabinitol 4-dehydrogenase compare
BPHYT_RS07705 -1.4 -1.5 arginine succinyltransferase compare
BPHYT_RS14550 -1.4 -0.8 tRNA-Asn compare
BPHYT_RS02285 -1.4 -5.4 cell division protein compare
BPHYT_RS06410 -1.4 -1.7 transcriptional regulator compare
BPHYT_RS31770 -1.4 -3.6 TetR family transcriptional regulator compare
BPHYT_RS01510 -1.4 -5.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS36055 -1.4 -2.8 hypothetical protein compare
BPHYT_RS20755 -1.4 -1.9 fuconate dehydratase compare
BPHYT_RS17185 -1.4 -4.7 N-acetylglutamate synthase compare
BPHYT_RS14050 -1.4 -4.8 UDP pyrophosphate phosphatase compare
BPHYT_RS18280 -1.3 -4.9 TetR family transcriptional regulator compare
BPHYT_RS04990 -1.3 -1.7 hypothetical protein compare
BPHYT_RS26310 -1.3 -1.4 ribonuclease R compare
BPHYT_RS18995 -1.3 -3.3 purine-binding chemotaxis protein compare
BPHYT_RS24760 -1.3 -1.6 cytochrome B561 compare
BPHYT_RS18255 -1.3 -1.5 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS28900 -1.3 -2.3 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS07690 -1.3 -1.7 AraC family transcriptional regulator compare
BPHYT_RS19000 -1.3 -6.4 chemotaxis protein CheA compare
BPHYT_RS17100 -1.3 -3.0 RNA pyrophosphohydrolase compare
BPHYT_RS26575 -1.3 -1.6 hypothetical protein compare
BPHYT_RS14275 -1.3 -1.6 hypothetical protein compare
BPHYT_RS25295 -1.3 -1.1 cobalt transporter compare
BPHYT_RS09365 -1.3 -1.7 cytochrome C2 compare
BPHYT_RS20715 -1.3 -1.1 peptidase compare
BPHYT_RS11795 -1.3 -0.7 membrane protein compare
BPHYT_RS11390 -1.3 -7.0 penicillin-binding protein 1A compare
BPHYT_RS25490 -1.3 -2.2 hypothetical protein compare
BPHYT_RS33580 -1.3 -2.8 geranyltranstransferase compare
BPHYT_RS10135 -1.3 -0.7 hypothetical protein compare
BPHYT_RS11540 -1.3 -1.5 ureidoglycolate hydrolase compare
BPHYT_RS07405 -1.3 -2.6 UDP-glucose 4-epimerase compare
BPHYT_RS01505 -1.3 -1.6 7-cyano-7-deazaguanine reductase compare
BPHYT_RS16345 -1.3 -2.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS21765 -1.3 -1.2 IclR family transcriptional regulator compare
BPHYT_RS06375 -1.3 -2.2 ribonuclease compare
BPHYT_RS10100 -1.3 -1.9 dihydroxy-acid dehydratase compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms