Experiment set29S535 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +3.5 2.9 ATPase compare
BPHYT_RS25020 +3.1 6.0 phospholipid-binding protein compare
BPHYT_RS16250 +2.8 3.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS31840 +2.8 7.6 anhydrase compare
BPHYT_RS11810 +2.7 2.3 LysR family transcriptional regulator compare
BPHYT_RS28480 +2.3 3.3 hydroxyglutarate oxidase compare
BPHYT_RS05570 +2.3 5.5 hypothetical protein compare
BPHYT_RS28245 +2.2 4.4 MFS transporter compare
BPHYT_RS01435 +2.2 16.9 LysR family transcriptional regulator compare
BPHYT_RS26510 +2.2 2.1 transcriptional regulator compare
BPHYT_RS02965 +2.2 6.8 membrane protein compare
BPHYT_RS30340 +2.2 4.1 AraC family transcriptional regulator compare
BPHYT_RS23370 +2.1 4.1 glycosyl transferase family 1 compare
BPHYT_RS33515 +2.1 4.3 porin compare
BPHYT_RS35730 +2.1 2.8 hypothetical protein compare
BPHYT_RS16855 +2.0 7.7 16S rRNA methyltransferase compare
BPHYT_RS24095 +1.9 5.1 membrane protein compare
BPHYT_RS07385 +1.9 3.0 glycosyl transferase family 1 compare
BPHYT_RS24075 +1.9 7.9 ATPase compare
BPHYT_RS01170 +1.9 2.4 hypothetical protein compare
BPHYT_RS27580 +1.8 3.4 F0F1 ATP synthase subunit alpha compare
BPHYT_RS20940 +1.8 2.3 citrate synthase compare
BPHYT_RS34430 +1.8 2.4 2-keto-4-pentenoate hydratase compare
BPHYT_RS07340 +1.7 4.1 glyoxalase compare
BPHYT_RS23930 +1.7 3.1 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS20425 +1.7 2.8 hypothetical protein compare
BPHYT_RS26955 +1.7 2.0 succinylglutamate desuccinylase compare
BPHYT_RS27705 +1.7 3.2 universal stress protein A compare
BPHYT_RS18795 +1.7 2.4 flagellar export protein FliJ compare
BPHYT_RS24955 +1.7 3.9 cytochrome C peroxidase compare
BPHYT_RS24220 +1.7 3.6 alpha/beta hydrolase compare
BPHYT_RS10070 +1.7 6.2 hypothetical protein compare
BPHYT_RS21905 +1.6 1.5 IclR family transcriptional regulator compare
BPHYT_RS13605 +1.6 1.3 tRNA-Pro compare
BPHYT_RS05725 +1.6 5.4 hypothetical protein compare
BPHYT_RS30040 +1.6 1.8 hypothetical protein compare
BPHYT_RS18935 +1.6 6.3 flagellar biosynthesis regulator FlhF compare
BPHYT_RS03755 +1.6 1.5 pilus assembly protein PilE compare
BPHYT_RS29345 +1.6 3.1 lipoyl synthase compare
BPHYT_RS13200 +1.6 1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS09895 +1.6 2.3 LysR family transcriptional regulator compare
BPHYT_RS31225 +1.6 4.6 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS29040 +1.5 3.9 diguanylate cyclase compare
BPHYT_RS35275 +1.5 1.6 acetyltransferase compare
BPHYT_RS34270 +1.5 5.7 LysR family transcriptional regulator compare
BPHYT_RS29950 +1.5 2.7 hypothetical protein compare
BPHYT_RS09650 +1.5 1.6 hypothetical protein compare
BPHYT_RS35800 +1.5 4.0 TetR family transcriptional regulator compare
BPHYT_RS07055 +1.5 1.5 sulfotransferase compare
BPHYT_RS15615 +1.5 2.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS29905 +1.5 3.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS01790 +1.5 7.5 LuxR family transcriptional regulator compare
BPHYT_RS05610 +1.5 9.8 DNA-cytosine methyltransferase compare
BPHYT_RS27570 +1.4 2.4 universal stress protein UspA compare
BPHYT_RS33150 +1.4 1.4 beta-lactamase compare
BPHYT_RS18515 +1.4 1.1 hypothetical protein compare
BPHYT_RS04675 +1.4 4.1 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS18945 +1.4 6.7 flagellar biosynthesis protein FlhB compare
BPHYT_RS26290 +1.4 3.5 photosystem reaction center subunit H compare
BPHYT_RS21595 +1.4 2.3 TetR family transcriptional regulator compare
BPHYT_RS29520 +1.4 1.2 hypothetical protein compare
BPHYT_RS22320 +1.4 5.0 hypothetical protein compare
BPHYT_RS19885 +1.4 4.1 hypothetical protein compare
BPHYT_RS24410 +1.4 4.1 type VI secretion protein compare
BPHYT_RS11275 +1.4 2.5 hypothetical protein compare
BPHYT_RS24565 +1.4 4.3 membrane protein compare
BPHYT_RS31950 +1.4 2.1 short-chain dehydrogenase compare
BPHYT_RS04965 +1.3 8.4 ATP-binding protein compare
BPHYT_RS08185 +1.3 2.8 pilus assembly protein CpaF compare
BPHYT_RS09135 +1.3 4.0 ribosomal large subunit pseudouridine synthase D compare
BPHYT_RS10980 +1.3 3.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS21860 +1.3 2.0 hypothetical protein compare
BPHYT_RS21840 +1.3 2.3 hypothetical protein compare
BPHYT_RS21340 +1.3 3.3 2OG-Fe(II) oxygenase compare
BPHYT_RS26925 +1.3 2.0 NIPSNAP family containing protein compare
BPHYT_RS18865 +1.3 1.7 flagellar L-ring protein FlgH compare
BPHYT_RS11245 +1.3 1.7 ATPase compare
BPHYT_RS30460 +1.3 3.9 glycerate dehydrogenase compare
BPHYT_RS23225 +1.3 1.9 hypothetical protein compare
BPHYT_RS07960 +1.3 1.4 hypothetical protein compare
BPHYT_RS27625 +1.3 1.1 transport-associated protein compare
BPHYT_RS16470 +1.3 4.0 DeoR faimly transcriptional regulator compare
BPHYT_RS10875 +1.3 1.7 transporter compare
BPHYT_RS34900 +1.2 2.4 hypothetical protein compare
BPHYT_RS23650 +1.2 1.0 hypothetical protein compare
BPHYT_RS18855 +1.2 3.5 flagellar rod assembly protein FlgJ compare
BPHYT_RS26815 +1.2 3.4 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS21505 +1.2 2.3 amidohydrolase compare
BPHYT_RS35100 +1.2 2.1 ABC transporter substrate-binding protein compare
BPHYT_RS22525 +1.2 2.9 dioxygenase compare
BPHYT_RS25950 +1.2 1.6 sensor histidine kinase compare
BPHYT_RS12205 +1.2 2.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS09780 +1.2 3.9 polysaccharide biosynthesis protein compare
BPHYT_RS13755 +1.2 1.3 metallophosphoesterase compare
BPHYT_RS25250 +1.2 1.8 porin compare
BPHYT_RS17905 +1.2 2.2 fimbrial assembly family protein compare
BPHYT_RS34850 +1.2 2.0 acylphosphatase compare
BPHYT_RS19115 +1.2 1.0 acyl carrier protein compare
BPHYT_RS10565 +1.2 1.0 NADP oxidoreductase compare
BPHYT_RS29975 +1.2 2.6 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS06985 +1.2 5.2 fumarate hydratase compare
BPHYT_RS27830 +1.2 2.7 universal stress protein A compare
BPHYT_RS22560 +1.1 5.0 flagellar transcriptional regulator FlhD compare
BPHYT_RS29640 +1.1 2.4 NAD-dependent deacetylase compare
BPHYT_RS33125 +1.1 2.1 hypothetical protein compare
BPHYT_RS28365 +1.1 1.5 Germin subfamily 1 member 15 compare
BPHYT_RS00530 +1.1 1.2 hypothetical protein compare
BPHYT_RS28370 +1.1 1.0 peroxidase compare
BPHYT_RS32290 +1.1 1.4 hypothetical protein compare
BPHYT_RS23020 +1.1 2.0 alcohol dehydrogenase compare
BPHYT_RS10845 +1.1 3.1 UbiD family decarboxylase compare
BPHYT_RS08665 +1.1 0.9 hypothetical protein compare
BPHYT_RS07640 +1.1 4.4 hypothetical protein compare
BPHYT_RS33615 +1.1 2.0 decarboxylase compare
BPHYT_RS08130 +1.1 1.1 transposase compare
BPHYT_RS07815 +1.1 1.8 phosphonate transporter compare
BPHYT_RS33535 +1.1 7.8 RNA polymerase sigma factor RpoD compare
BPHYT_RS26630 +1.1 2.0 AraC family transcriptional regulator compare
BPHYT_RS23830 +1.1 1.8 acetyl-CoA hydrolase compare
BPHYT_RS25590 +1.1 1.6 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS19025 +1.1 3.2 transcriptional regulator compare
BPHYT_RS19325 +1.1 1.0 glycine cleavage system H protein compare
BPHYT_RS30490 +1.1 0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS34100 +1.1 1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS18940 +1.1 6.3 flagellar biosynthesis protein FlhA compare
BPHYT_RS31630 +1.1 1.7 hypothetical protein compare
BPHYT_RS18800 +1.1 4.1 flagellar hook-length control protein compare
BPHYT_RS22850 +1.1 1.6 thioredoxin compare
BPHYT_RS25335 +1.1 0.6 hypothetical protein compare
BPHYT_RS09030 +1.1 2.7 membrane protein compare
BPHYT_RS25480 +1.1 2.2 hypothetical protein compare
BPHYT_RS36310 +1.1 4.4 hypothetical protein compare
BPHYT_RS34185 +1.1 1.6 cold-shock protein compare
BPHYT_RS11610 +1.1 1.9 peroxiredoxin compare
BPHYT_RS36305 +1.0 5.6 hypothetical protein compare
BPHYT_RS27790 +1.0 2.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS35315 +1.0 1.6 threonyl-tRNA synthetase compare
BPHYT_RS23535 +1.0 2.0 ABC transporter substrate-binding protein compare
BPHYT_RS19935 +1.0 1.2 protein serine/threonine phosphatase compare
BPHYT_RS29720 +1.0 1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS25700 +1.0 3.5 MFS transporter compare
BPHYT_RS27200 +1.0 2.0 pyridoxal 4-dehydrogenase compare
BPHYT_RS00295 +1.0 2.2 hypothetical protein compare
BPHYT_RS19735 +1.0 1.3 hypothetical protein compare
BPHYT_RS18775 +1.0 6.7 flagellar M-ring protein FliF compare
BPHYT_RS20070 +1.0 1.7 hypothetical protein compare
BPHYT_RS34245 +1.0 1.3 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS27695 +1.0 1.4 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase compare
BPHYT_RS36295 +1.0 6.0 hypothetical protein compare
BPHYT_RS21725 +1.0 1.6 taurine ABC transporter substrate-binding protein compare
BPHYT_RS22160 +1.0 1.9 FKBP-type peptidylprolyl isomerase compare
BPHYT_RS09245 +1.0 1.1 ABC transporter ATP-binding protein compare
BPHYT_RS32605 +1.0 2.5 hypothetical protein compare
BPHYT_RS04500 +1.0 1.7 urease accessory protein UreF compare
BPHYT_RS06390 +1.0 2.2 ribosome-associated protein IOJAP compare
BPHYT_RS32200 +1.0 1.2 lytic transglycosylase compare
BPHYT_RS11155 +1.0 1.0 hypothetical protein compare
BPHYT_RS09875 +1.0 2.3 aldehyde dehydrogenase compare
BPHYT_RS29080 +1.0 2.6 transporter compare
BPHYT_RS04285 +1.0 0.9 rhamnosyltransferase compare
BPHYT_RS35165 +1.0 3.8 peptidase compare
BPHYT_RS24665 +1.0 1.6 ABC transporter permease compare
BPHYT_RS31020 +1.0 1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS18415 +1.0 2.2 hypothetical protein compare
BPHYT_RS11100 +1.0 1.7 methyltransferase compare
BPHYT_RS15290 +1.0 1.9 tRNA-Arg compare
BPHYT_RS30755 +1.0 3.9 MFS transporter compare
BPHYT_RS28705 +1.0 1.0 IclR family transcriptional regulator compare
BPHYT_RS28065 +1.0 1.0 hypothetical protein compare
BPHYT_RS23625 +1.0 2.4 membrane protein compare
BPHYT_RS20905 +1.0 1.1 hypothetical protein compare
BPHYT_RS33890 +1.0 4.2 fimbrial protein FimV compare
BPHYT_RS18885 +1.0 5.0 flagellar basal body rod modification protein FlgD compare
BPHYT_RS29690 +1.0 1.8 exodeoxyribonuclease III compare
BPHYT_RS17810 +1.0 2.5 transcriptional regulator compare
BPHYT_RS16420 +1.0 3.0 copper resistance protein CopD compare
BPHYT_RS03500 +1.0 4.5 glycolate oxidase compare
BPHYT_RS02540 +1.0 1.5 hypothetical protein compare
BPHYT_RS17900 +1.0 3.0 hypothetical protein compare
BPHYT_RS02100 +0.9 1.4 AsnC family transcriptional regulator compare
BPHYT_RS35670 +0.9 2.4 bicyclomycin resistance protein compare
BPHYT_RS31635 +0.9 1.4 choline dehydrogenase compare
BPHYT_RS21370 +0.9 1.9 glyoxalase compare
BPHYT_RS07930 +0.9 1.5 hypothetical protein compare
BPHYT_RS18810 +0.9 5.2 flagellar motor switch protein FliM compare
BPHYT_RS22750 +0.9 1.9 Flagellar brake protein YcgR 2 compare
BPHYT_RS33460 +0.9 0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS32150 +0.9 1.3 hypothetical protein compare
BPHYT_RS05365 +0.9 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS25520 +0.9 1.2 TetR family transcriptional regulator compare
BPHYT_RS18895 +0.9 3.7 flagellar basal body rod protein FlgB compare
BPHYT_RS27690 +0.9 1.7 carbamate kinase compare
BPHYT_RS25405 +0.9 1.8 CoA-transferase compare
BPHYT_RS10760 +0.9 1.7 major facilitator transporter compare
BPHYT_RS08235 +0.9 0.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS21020 +0.9 3.1 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS26055 +0.9 1.8 ABC transporter substrate-binding protein compare
BPHYT_RS36320 +0.9 3.1 type IV secretion system family protein compare
BPHYT_RS09415 +0.9 3.1 carboxylesterase compare
BPHYT_RS33155 +0.9 1.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms