Experiment set29S534 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03150 -6.2 -12.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16270 -5.9 -5.3 phosphoglycerate kinase compare
BPHYT_RS14915 -5.8 -6.9 phosphoserine aminotransferase compare
BPHYT_RS18320 -5.8 -4.0 orotate phosphoribosyltransferase compare
BPHYT_RS06555 -5.6 -6.7 ketol-acid reductoisomerase compare
BPHYT_RS17690 -5.5 -9.2 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -5.3 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33880 -5.2 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06545 -5.1 -6.1 acetolactate synthase compare
BPHYT_RS17685 -5.0 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33835 -5.0 -9.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15920 -4.9 -8.9 argininosuccinate synthase compare
BPHYT_RS16835 -4.9 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14895 -4.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33865 -4.5 -6.8 tryptophan synthase alpha chain compare
BPHYT_RS33875 -4.4 -9.0 tryptophan synthase subunit alpha compare
BPHYT_RS02610 -4.4 -5.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14050 -4.4 -7.6 UDP pyrophosphate phosphatase compare
BPHYT_RS08955 -4.3 -3.0 homoserine dehydrogenase compare
BPHYT_RS12845 -4.2 -14.2 ATPase compare
BPHYT_RS17395 -4.2 -2.5 anthranilate synthase subunit II compare
BPHYT_RS17675 -4.1 -2.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33645 -4.1 -2.8 homoserine kinase compare
BPHYT_RS17405 -4.0 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS02590 -4.0 -9.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15915 -3.9 -10.4 ornithine carbamoyltransferase compare
BPHYT_RS16905 -3.9 -5.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17885 -3.8 -5.2 3-dehydroquinate synthase compare
BPHYT_RS01595 -3.8 -10.9 homoserine O-acetyltransferase compare
BPHYT_RS16735 -3.8 -6.3 phosphogluconate dehydratase compare
BPHYT_RS03410 -3.8 -2.7 queuine tRNA-ribosyltransferase compare
BPHYT_RS17945 -3.6 -2.5 cytochrome C biogenesis protein compare
BPHYT_RS06900 -3.5 -4.8 aspartate aminotransferase compare
BPHYT_RS04335 -3.5 -2.1 membrane protein compare
BPHYT_RS35885 -3.5 -7.0 hypothetical protein compare
BPHYT_RS17680 -3.4 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06530 -3.2 -1.4 membrane protein compare
BPHYT_RS17890 -3.2 -1.9 shikimate kinase compare
BPHYT_RS17855 -3.2 -17.0 glutamate synthase compare
BPHYT_RS17715 -3.1 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02690 -3.0 -12.3 protoheme IX farnesyltransferase compare
BPHYT_RS05010 -3.0 -4.1 RpiR family transcriptional regulator compare
BPHYT_RS17265 -3.0 -1.5 cell division protein compare
BPHYT_RS04080 -3.0 -7.1 chloride channel protein compare
BPHYT_RS28075 -3.0 -1.0 cytochrome B561 compare
BPHYT_RS06405 -2.9 -5.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS02755 -2.9 -1.4 cyd operon protein YbgT compare
BPHYT_RS02860 -2.9 -1.0 membrane protein compare
BPHYT_RS05035 -2.9 -5.6 sugar ABC transporter permease compare
BPHYT_RS16245 -2.9 -2.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS13705 -2.8 -2.9 chorismate synthase compare
BPHYT_RS17400 -2.8 -7.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS16085 -2.8 -4.1 DeoR faimly transcriptional regulator compare
BPHYT_RS02955 -2.7 -9.4 formyltetrahydrofolate deformylase compare
BPHYT_RS33900 -2.7 -10.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS11390 -2.7 -10.3 penicillin-binding protein 1A compare
BPHYT_RS06610 -2.7 -1.3 triosephosphate isomerase compare
BPHYT_RS17520 -2.7 -3.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08960 -2.7 -1.6 threonine synthase compare
BPHYT_RS16340 -2.7 -4.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS35230 -2.7 -1.8 type 11 methyltransferase compare
BPHYT_RS33840 -2.6 -4.9 amidophosphoribosyltransferase compare
BPHYT_RS12530 -2.6 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04720 -2.5 -8.0 transcriptional regulator compare
BPHYT_RS33915 -2.5 -6.4 isopropylmalate isomerase compare
BPHYT_RS02045 -2.5 -3.5 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS04955 -2.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS12465 -2.4 -1.6 inositol monophosphatase compare
BPHYT_RS30750 -2.4 -1.7 GntR family transcriptional regulator compare
BPHYT_RS06550 -2.4 -2.3 acetolactate synthase compare
BPHYT_RS05025 -2.4 -5.1 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17390 -2.4 -14.8 anthranilate synthase subunit I compare
BPHYT_RS18705 -2.4 -1.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS24315 -2.4 -1.9 phosphoribosyltransferase compare
BPHYT_RS14400 -2.3 -3.1 anti-sigma factor compare
BPHYT_RS18910 -2.3 -1.6 FlgN compare
BPHYT_RS16710 -2.3 -1.1 LysR family transcriptional regulator compare
BPHYT_RS06975 -2.3 -1.5 glutamate racemase compare
BPHYT_RS12150 -2.2 -11.9 PII uridylyl-transferase compare
BPHYT_RS14910 -2.2 -9.9 chorismate mutase compare
BPHYT_RS33920 -2.2 -4.4 type II citrate synthase compare
BPHYT_RS14190 -2.2 -3.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08245 -2.2 -6.6 anti-sigma factor compare
BPHYT_RS11075 -2.1 -3.2 membrane protein compare
BPHYT_RS17700 -2.1 -2.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS20935 -2.1 -3.8 dehydrogenase compare
BPHYT_RS05960 -2.1 -6.7 endoribonuclease L-PSP compare
BPHYT_RS05040 -2.1 -3.6 sugar ABC transporter ATPase compare
BPHYT_RS03135 -2.1 -8.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS09500 -2.1 -6.9 glucose-6-phosphate isomerase compare
BPHYT_RS02525 -2.0 -5.9 membrane protein compare
BPHYT_RS09465 -2.0 -2.0 transcriptional regulator compare
BPHYT_RS02665 -2.0 -10.3 MFS transporter compare
BPHYT_RS33905 -2.0 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06045 -2.0 -6.2 transaldolase compare
BPHYT_RS16435 -2.0 -11.1 alcohol dehydrogenase compare
BPHYT_RS34410 -2.0 -1.5 hypothetical protein compare
BPHYT_RS17530 -2.0 -4.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS27085 -2.0 -1.5 alkylhydroperoxidase compare
BPHYT_RS15415 -2.0 -9.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS10540 -2.0 -1.3 secretion protein compare
BPHYT_RS18655 -1.9 -4.5 3-oxoacyl-ACP synthase compare
BPHYT_RS03655 -1.9 -1.6 membrane protein compare
BPHYT_RS33850 -1.9 -1.1 sporulation protein compare
BPHYT_RS16180 -1.9 -1.1 TetR family transcriptional regulator compare
BPHYT_RS22190 -1.9 -1.1 nucleoid-structuring protein H-NS compare
BPHYT_RS18610 -1.8 -7.0 lytic transglycosylase compare
BPHYT_RS12615 -1.8 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS16430 -1.8 -12.4 cytochrome C compare
BPHYT_RS06410 -1.8 -2.8 transcriptional regulator compare
BPHYT_RS06350 -1.8 -2.0 chemotaxis protein CheY compare
BPHYT_RS14865 -1.8 -1.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS36300 -1.8 -8.5 hypothetical protein compare
BPHYT_RS18760 -1.8 -2.3 flagellar biosynthesis protein FliT compare
BPHYT_RS05895 -1.8 -1.4 hypothetical protein compare
BPHYT_RS04430 -1.8 -1.5 amino acid ABC transporter ATPase compare
BPHYT_RS18970 -1.8 -10.2 chemotaxis protein compare
BPHYT_RS13325 -1.8 -2.7 TetR family transcriptional regulator compare
BPHYT_RS29620 -1.7 -1.0 hypothetical protein compare
BPHYT_RS16840 -1.7 -1.6 transketolase compare
BPHYT_RS08125 -1.7 -7.9 ATPase compare
BPHYT_RS18995 -1.7 -6.9 purine-binding chemotaxis protein compare
BPHYT_RS14900 -1.7 -2.4 prephenate dehydrogenase compare
BPHYT_RS18280 -1.7 -7.5 TetR family transcriptional regulator compare
BPHYT_RS12055 -1.7 -12.2 phosphoenolpyruvate synthase compare
BPHYT_RS23570 -1.7 -4.3 chemotaxis protein CheY compare
BPHYT_RS03330 -1.6 -2.3 hypothetical protein compare
BPHYT_RS26685 -1.6 -1.0 precorrin-8X methylmutase compare
BPHYT_RS06540 -1.6 -5.2 RNA polymerase sigma70 factor compare
BPHYT_RS18965 -1.6 -1.8 chemotaxis protein CheY compare
BPHYT_RS09145 -1.6 -8.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS32260 -1.6 -1.0 hypothetical protein compare
BPHYT_RS22860 -1.6 -1.0 chemotaxis protein CheY compare
BPHYT_RS06155 -1.6 -5.6 DEAD/DEAH box helicase compare
BPHYT_RS09515 -1.5 -1.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06070 -1.5 -8.0 cytochrome C compare
BPHYT_RS02640 -1.5 -8.6 cytochrome C oxidase compare
BPHYT_RS05225 -1.5 -7.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS03535 -1.5 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS31040 -1.5 -1.9 sugar transporter compare
BPHYT_RS07325 -1.5 -0.7 GntR family transcriptional regulator compare
BPHYT_RS12985 -1.5 -1.0 amino acid acetyltransferase compare
BPHYT_RS34545 -1.5 -2.1 transcriptional regulator compare
BPHYT_RS20880 -1.5 -0.9 polyketide cyclase compare
BPHYT_RS03685 -1.5 -2.5 Tol system periplasmic component YbgF compare
BPHYT_RS16345 -1.5 -2.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS15620 -1.5 -2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02685 -1.5 -6.6 cytochrome C oxidase subunit I compare
BPHYT_RS23155 -1.5 -1.0 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS06375 -1.5 -2.8 ribonuclease compare
BPHYT_RS05020 -1.5 -5.2 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS18850 -1.5 -6.2 Flagellar brake protein YcgR 1 compare
BPHYT_RS03495 -1.4 -4.1 hypothetical protein compare
BPHYT_RS17380 -1.4 -6.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS34815 -1.4 -1.9 ABC transporter compare
BPHYT_RS10100 -1.4 -3.4 dihydroxy-acid dehydratase compare
BPHYT_RS05030 -1.4 -1.9 sugar ABC transporter permease compare
BPHYT_RS02595 -1.4 -1.1 sulfurtransferase compare
BPHYT_RS01500 -1.4 -11.1 7-cyano-7-deazaguanine synthase compare
BPHYT_RS31515 -1.4 -1.5 agmatinase compare
BPHYT_RS04455 -1.4 -1.1 glycosyl transferase compare
BPHYT_RS08335 -1.4 -1.0 hypothetical protein compare
BPHYT_RS33655 -1.4 -3.3 MarR family transcriptional regulator compare
BPHYT_RS16210 -1.4 -2.1 peptidase compare
BPHYT_RS20790 -1.4 -1.1 TetR family transcriptional regulator compare
BPHYT_RS27060 -1.4 -1.7 photosystem reaction center subunit H compare
BPHYT_RS14275 -1.4 -2.0 hypothetical protein compare
BPHYT_RS11980 -1.4 -2.7 LysR family transcriptional regulator compare
BPHYT_RS28360 -1.4 -0.9 carboxymuconolactone decarboxylase compare
BPHYT_RS09160 -1.4 -2.7 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS12940 -1.4 -4.8 signal transduction histidine kinase compare
BPHYT_RS18980 -1.4 -5.9 chemotaxis protein CheR compare
BPHYT_RS25135 -1.4 -1.3 hypothetical protein compare
BPHYT_RS07540 -1.3 -0.9 hypothetical protein compare
BPHYT_RS26310 -1.3 -1.5 ribonuclease R compare
BPHYT_RS14185 -1.3 -1.5 transcription elongation factor GreA compare
BPHYT_RS06915 -1.3 -1.7 hypothetical protein compare
BPHYT_RS01955 -1.3 -3.0 hypothetical protein compare
BPHYT_RS08950 -1.3 -5.3 aminotransferase compare
BPHYT_RS02050 -1.3 -3.4 D-mannose isomerase (EC 5.3.1.7) (from data) compare
BPHYT_RS28410 -1.3 -1.5 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS12925 -1.3 -0.9 exodeoxyribonuclease III compare
BPHYT_RS25780 -1.3 -0.6 DeoR faimly transcriptional regulator compare
BPHYT_RS03645 -1.3 -1.5 tRNA dimethylallyltransferase compare
BPHYT_RS27895 -1.3 -2.4 enoyl-CoA hydratase compare
BPHYT_RS03065 -1.3 -1.8 LuxR family transcriptional regulator compare
BPHYT_RS14195 -1.3 -1.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS28830 -1.3 -0.7 LysR family transcriptional regulator compare
BPHYT_RS10065 -1.3 -1.2 cytochrome C oxidase subunit I compare
BPHYT_RS20025 -1.3 -2.1 crotonase compare
BPHYT_RS07515 -1.3 -1.6 photosystem reaction center subunit H compare
BPHYT_RS01455 -1.3 -1.0 peptide deformylase compare
BPHYT_RS06065 -1.3 -6.9 cytochrome C compare
BPHYT_RS08885 -1.3 -5.4 inorganic phosphate transporter compare
BPHYT_RS14380 -1.3 -3.5 elongation factor 4 compare
BPHYT_RS14345 -1.3 -3.2 beta-hexosaminidase compare
BPHYT_RS28200 -1.3 -2.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS19325 -1.2 -2.2 glycine cleavage system H protein compare
BPHYT_RS22810 -1.2 -1.8 biopolymer transporter ExbB compare
BPHYT_RS28485 -1.2 -0.7 GntR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms