Experiment set29S534 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +2.5 2.3 ATPase compare
BPHYT_RS28365 +2.3 4.2 Germin subfamily 1 member 15 compare
BPHYT_RS31840 +2.2 4.5 anhydrase compare
BPHYT_RS24565 +2.2 3.5 membrane protein compare
BPHYT_RS27580 +2.0 5.8 F0F1 ATP synthase subunit alpha compare
BPHYT_RS16250 +1.8 2.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS34430 +1.7 2.6 2-keto-4-pentenoate hydratase compare
BPHYT_RS04890 +1.7 1.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS02965 +1.6 4.2 membrane protein compare
BPHYT_RS16335 +1.6 2.3 membrane protein compare
BPHYT_RS30490 +1.6 1.7 2-haloalkanoic acid dehalogenase compare
BPHYT_RS28245 +1.6 3.1 MFS transporter compare
BPHYT_RS27175 +1.6 1.3 DNA-binding protein compare
BPHYT_RS33535 +1.5 12.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS05570 +1.5 3.6 hypothetical protein compare
BPHYT_RS23370 +1.5 2.9 glycosyl transferase family 1 compare
BPHYT_RS28480 +1.5 1.7 hydroxyglutarate oxidase compare
BPHYT_RS10070 +1.5 5.4 hypothetical protein compare
BPHYT_RS26290 +1.4 3.3 photosystem reaction center subunit H compare
BPHYT_RS16855 +1.4 9.2 16S rRNA methyltransferase compare
BPHYT_RS30340 +1.4 2.9 AraC family transcriptional regulator compare
BPHYT_RS22560 +1.4 7.7 flagellar transcriptional regulator FlhD compare
BPHYT_RS09650 +1.4 1.8 hypothetical protein compare
BPHYT_RS13200 +1.4 1.8 molybdopterin binding oxidoreductase compare
BPHYT_RS30350 +1.4 2.4 LysR family transcriptional regulator compare
BPHYT_RS29345 +1.3 2.9 lipoyl synthase compare
BPHYT_RS01435 +1.3 11.6 LysR family transcriptional regulator compare
BPHYT_RS09895 +1.3 2.0 LysR family transcriptional regulator compare
BPHYT_RS25520 +1.3 1.3 TetR family transcriptional regulator compare
BPHYT_RS05725 +1.3 4.0 hypothetical protein compare
BPHYT_RS29040 +1.3 5.2 diguanylate cyclase compare
BPHYT_RS27705 +1.3 3.3 universal stress protein A compare
BPHYT_RS10565 +1.2 2.8 NADP oxidoreductase compare
BPHYT_RS24075 +1.2 5.4 ATPase compare
BPHYT_RS33515 +1.2 5.2 porin compare
BPHYT_RS08615 +1.2 1.5 hypothetical protein compare
BPHYT_RS24135 +1.2 3.3 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS04965 +1.2 7.3 ATP-binding protein compare
BPHYT_RS23930 +1.2 2.9 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS20425 +1.2 2.0 hypothetical protein compare
BPHYT_RS09135 +1.2 4.0 ribosomal large subunit pseudouridine synthase D compare
BPHYT_RS06435 +1.2 2.1 hypothetical protein compare
BPHYT_RS01790 +1.2 8.5 LuxR family transcriptional regulator compare
BPHYT_RS24095 +1.2 3.2 membrane protein compare
BPHYT_RS10980 +1.2 3.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS32750 +1.1 1.6 lipoprotein compare
BPHYT_RS24955 +1.1 2.4 cytochrome C peroxidase compare
BPHYT_RS11810 +1.1 1.5 LysR family transcriptional regulator compare
BPHYT_RS08130 +1.1 1.2 transposase compare
BPHYT_RS04625 +1.1 1.7 urea ABC transporter ATP-binding protein compare
BPHYT_RS33690 +1.1 1.0 molybdate ABC transporter permease compare
BPHYT_RS21705 +1.1 3.5 sulfoacetaldehyde acetyltransferase compare
BPHYT_RS30365 +1.1 1.1 beta-lactamase compare
BPHYT_RS27695 +1.1 2.1 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase compare
BPHYT_RS36545 +1.1 3.9 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS26025 +1.1 0.9 hypothetical protein compare
BPHYT_RS14120 +1.1 2.8 chemotaxis protein CheY compare
BPHYT_RS25445 +1.1 2.1 alkyl hydroperoxide reductase compare
BPHYT_RS01315 +1.1 2.4 cupin compare
BPHYT_RS21340 +1.1 2.0 2OG-Fe(II) oxygenase compare
BPHYT_RS31950 +1.1 1.2 short-chain dehydrogenase compare
BPHYT_RS21020 +1.1 2.2 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS07040 +1.1 2.6 asparaginase compare
BPHYT_RS28370 +1.0 1.0 peroxidase compare
BPHYT_RS23830 +1.0 1.6 acetyl-CoA hydrolase compare
BPHYT_RS32605 +1.0 2.3 hypothetical protein compare
BPHYT_RS29905 +1.0 1.4 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS07475 +1.0 1.6 nitrate reductase compare
BPHYT_RS27785 +1.0 2.2 hypothetical protein compare
BPHYT_RS23070 +1.0 3.1 hypothetical protein compare
BPHYT_RS30450 +1.0 0.9 ABC transporter permease compare
BPHYT_RS24410 +1.0 3.2 type VI secretion protein compare
BPHYT_RS18865 +1.0 1.7 flagellar L-ring protein FlgH compare
BPHYT_RS25405 +1.0 1.0 CoA-transferase compare
BPHYT_RS28535 +1.0 0.9 response regulator receiver compare
BPHYT_RS07640 +1.0 3.7 hypothetical protein compare
BPHYT_RS21860 +1.0 1.7 hypothetical protein compare
BPHYT_RS33805 +1.0 1.2 hypothetical protein compare
BPHYT_RS36435 +1.0 2.3 hypothetical protein compare
BPHYT_RS07210 +1.0 1.3 permease compare
BPHYT_RS25335 +1.0 0.6 hypothetical protein compare
BPHYT_RS23225 +1.0 1.5 hypothetical protein compare
BPHYT_RS07385 +1.0 2.3 glycosyl transferase family 1 compare
BPHYT_RS11215 +1.0 5.1 ribose ABC transporter ATPase compare
BPHYT_RS23175 +1.0 1.3 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS11275 +1.0 1.6 hypothetical protein compare
BPHYT_RS24665 +0.9 1.8 ABC transporter permease compare
BPHYT_RS27295 +0.9 0.9 hypothetical protein compare
BPHYT_RS19890 +0.9 1.3 hypothetical protein compare
BPHYT_RS13605 +0.9 0.7 tRNA-Pro compare
BPHYT_RS34270 +0.9 3.6 LysR family transcriptional regulator compare
BPHYT_RS20715 +0.9 0.9 peptidase compare
BPHYT_RS35730 +0.9 2.0 hypothetical protein compare
BPHYT_RS02005 +0.9 1.3 diguanylate phosphodiesterase compare
BPHYT_RS26955 +0.9 1.1 succinylglutamate desuccinylase compare
BPHYT_RS28350 +0.9 1.2 fatty acid desaturase compare
BPHYT_RS22640 +0.9 2.1 hydroxyproline-2-epimerase compare
BPHYT_RS27920 +0.9 1.1 tricarballylate utilization protein B compare
BPHYT_RS31255 +0.9 1.2 cytochrome B561 compare
BPHYT_RS31225 +0.9 2.0 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS35785 +0.9 1.7 glucose-1-dehydrogenase compare
BPHYT_RS24305 +0.9 2.0 glutathione S-transferase compare
BPHYT_RS34850 +0.9 3.3 acylphosphatase compare
BPHYT_RS29540 +0.9 1.1 aldolase compare
BPHYT_RS30825 +0.9 1.9 extradiol dioxygenase compare
BPHYT_RS25560 +0.9 1.3 RNA polymerase sigma factor compare
BPHYT_RS21130 +0.9 2.1 F420-dependent oxidoreductase compare
BPHYT_RS08280 +0.9 2.7 acyl dehydratase compare
BPHYT_RS19025 +0.9 4.0 transcriptional regulator compare
BPHYT_RS31020 +0.9 1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS05655 +0.9 2.7 membrane protein compare
BPHYT_RS27790 +0.9 3.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS25950 +0.9 1.3 sensor histidine kinase compare
BPHYT_RS27625 +0.9 1.7 transport-associated protein compare
BPHYT_RS26880 +0.9 1.6 ketosteroid isomerase compare
BPHYT_RS07340 +0.9 2.1 glyoxalase compare
BPHYT_RS22265 +0.9 1.1 hypothetical protein compare
BPHYT_RS28085 +0.9 3.0 Fis family transcriptional regulator compare
BPHYT_RS23495 +0.9 1.2 thioredoxin reductase compare
BPHYT_RS20070 +0.9 1.6 hypothetical protein compare
BPHYT_RS03755 +0.9 1.1 pilus assembly protein PilE compare
BPHYT_RS00530 +0.9 1.1 hypothetical protein compare
BPHYT_RS27170 +0.8 2.8 hypothetical protein compare
BPHYT_RS20440 +0.8 0.9 IclR family transcriptional regulator compare
BPHYT_RS06465 +0.8 2.4 transcriptional regulator compare
BPHYT_RS35105 +0.8 2.0 succinylglutamate desuccinylase/aspartoacylase compare
BPHYT_RS28945 +0.8 2.4 endo-1,4-D-glucanase compare
BPHYT_RS30870 +0.8 2.0 chromate transporter compare
BPHYT_RS23350 +0.8 1.6 NAD-dependent epimerase/dehydratase compare
BPHYT_RS28805 +0.8 1.5 glyoxalase compare
BPHYT_RS30900 +0.8 1.9 transcriptional regulator compare
BPHYT_RS03900 +0.8 0.9 phospholipid-binding protein compare
BPHYT_RS26925 +0.8 1.3 NIPSNAP family containing protein compare
BPHYT_RS14125 +0.8 1.0 transcriptional regulator compare
BPHYT_RS28205 +0.8 2.2 ATPase compare
BPHYT_RS28050 +0.8 2.8 serine protease compare
BPHYT_RS22530 +0.8 1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS10110 +0.8 2.4 anti-sigma factor compare
BPHYT_RS20350 +0.8 2.9 citrate transporter compare
BPHYT_RS32525 +0.8 0.7 hypothetical protein compare
BPHYT_RS16065 +0.8 0.7 LacI family transcriptional regulator compare
BPHYT_RS21840 +0.8 1.6 hypothetical protein compare
BPHYT_RS23705 +0.8 6.0 hypothetical protein compare
BPHYT_RS13185 +0.8 2.5 2,4-dienoyl-CoA reductase compare
BPHYT_RS04675 +0.8 4.2 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS21370 +0.8 2.9 glyoxalase compare
BPHYT_RS02035 +0.8 0.7 hypothetical protein compare
BPHYT_RS05215 +0.8 2.9 DNA-binding protein compare
BPHYT_RS21505 +0.8 1.5 amidohydrolase compare
BPHYT_RS36310 +0.8 3.2 hypothetical protein compare
BPHYT_RS25250 +0.8 1.1 porin compare
BPHYT_RS33890 +0.8 5.5 fimbrial protein FimV compare
BPHYT_RS00160 +0.8 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS18415 +0.8 2.0 hypothetical protein compare
BPHYT_RS24045 +0.8 2.0 amino acid ABC transporter compare
BPHYT_RS00115 +0.8 1.4 acetaldehyde dehydrogenase compare
BPHYT_RS29160 +0.8 2.2 transporter compare
BPHYT_RS20420 +0.8 2.9 DSBA oxidoreductase compare
BPHYT_RS32290 +0.8 1.6 hypothetical protein compare
BPHYT_RS15075 +0.8 1.2 dihydrokaempferol 4-reductase compare
BPHYT_RS26445 +0.8 3.0 NADPH:quinone reductase compare
BPHYT_RS10725 +0.8 1.1 polyketide cyclase compare
BPHYT_RS13815 +0.8 2.8 hypothetical protein compare
BPHYT_RS29230 +0.8 2.9 hypothetical protein compare
BPHYT_RS09560 +0.8 1.2 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS31510 +0.8 1.5 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS20595 +0.8 0.9 hypothetical protein compare
BPHYT_RS28910 +0.8 1.1 diguanylate phosphodiesterase compare
BPHYT_RS18645 +0.7 3.1 membrane protein compare
BPHYT_RS06990 +0.7 0.8 membrane protein compare
BPHYT_RS28170 +0.7 2.4 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS21595 +0.7 1.3 TetR family transcriptional regulator compare
BPHYT_RS36295 +0.7 4.7 hypothetical protein compare
BPHYT_RS22715 +0.7 1.3 L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) compare
BPHYT_RS21480 +0.7 1.4 hypothetical protein compare
BPHYT_RS27200 +0.7 1.8 pyridoxal 4-dehydrogenase compare
BPHYT_RS22525 +0.7 1.7 dioxygenase compare
BPHYT_RS25020 +0.7 1.1 phospholipid-binding protein compare
BPHYT_RS07060 +0.7 1.5 aldo/keto reductase compare
BPHYT_RS31630 +0.7 2.2 hypothetical protein compare
BPHYT_RS30025 +0.7 3.6 MFS transporter compare
BPHYT_RS07760 +0.7 1.0 diguanylate phosphodiesterase compare
BPHYT_RS34290 +0.7 2.9 molecular chaperone EcpD compare
BPHYT_RS00790 +0.7 1.8 conjugal transfer protein TraF compare
BPHYT_RS34800 +0.7 2.4 thioesterase compare
BPHYT_RS29425 +0.7 2.7 IclR family transcriptional regulator compare
BPHYT_RS36025 +0.7 1.7 hypothetical protein compare
BPHYT_RS02135 +0.7 1.6 glyoxylate reductase compare
BPHYT_RS29500 +0.7 1.1 hypothetical protein compare
BPHYT_RS21585 +0.7 1.4 short-chain dehydrogenase compare
BPHYT_RS02435 +0.7 1.2 hypothetical protein compare
BPHYT_RS24975 +0.7 1.6 RNA polymerase sigma24 factor compare
BPHYT_RS24660 +0.7 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS30520 +0.7 0.9 ABC transporter substrate-binding protein compare
BPHYT_RS28325 +0.7 2.1 NADPH-dependent FMN reductase compare
BPHYT_RS29975 +0.7 1.4 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS08185 +0.7 1.6 pilus assembly protein CpaF compare
BPHYT_RS26035 +0.7 1.9 ABC transporter ATP-binding protein compare
BPHYT_RS33230 +0.7 2.7 amino acid permease compare
BPHYT_RS27500 +0.7 1.3 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms