Experiment set29S533 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -6.6 -4.5 imidazole glycerol phosphate synthase compare
BPHYT_RS16270 -5.6 -4.9 phosphoglycerate kinase compare
BPHYT_RS03150 -5.6 -14.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06555 -5.3 -5.2 ketol-acid reductoisomerase compare
BPHYT_RS17685 -5.3 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS18320 -5.2 -3.6 orotate phosphoribosyltransferase compare
BPHYT_RS16835 -5.1 -6.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14915 -5.1 -7.0 phosphoserine aminotransferase compare
BPHYT_RS04955 -5.0 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS17680 -4.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14050 -4.8 -7.1 UDP pyrophosphate phosphatase compare
BPHYT_RS02590 -4.7 -7.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17945 -4.5 -2.1 cytochrome C biogenesis protein compare
BPHYT_RS33865 -4.4 -6.1 tryptophan synthase alpha chain compare
BPHYT_RS33880 -4.4 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33835 -4.3 -6.2 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS01595 -4.2 -10.0 homoserine O-acetyltransferase compare
BPHYT_RS06545 -4.2 -7.0 acetolactate synthase compare
BPHYT_RS33875 -4.2 -7.1 tryptophan synthase subunit alpha compare
BPHYT_RS15920 -4.2 -11.1 argininosuccinate synthase compare
BPHYT_RS16905 -4.1 -2.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS02045 -4.1 -4.9 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS17855 -4.0 -15.4 glutamate synthase compare
BPHYT_RS17885 -4.0 -3.9 3-dehydroquinate synthase compare
BPHYT_RS12845 -4.0 -12.2 ATPase compare
BPHYT_RS14895 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16735 -3.9 -6.6 phosphogluconate dehydratase compare
BPHYT_RS33915 -3.9 -7.9 isopropylmalate isomerase compare
BPHYT_RS33900 -3.9 -9.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS06900 -3.9 -3.8 aspartate aminotransferase compare
BPHYT_RS08955 -3.8 -2.6 homoserine dehydrogenase compare
BPHYT_RS15915 -3.8 -8.4 ornithine carbamoyltransferase compare
BPHYT_RS35885 -3.7 -6.0 hypothetical protein compare
BPHYT_RS33645 -3.5 -2.4 homoserine kinase compare
BPHYT_RS17400 -3.3 -8.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS36385 -3.2 -1.5 TetR family transcriptional regulator compare
BPHYT_RS31050 -3.2 -1.1 epimerase compare
BPHYT_RS02690 -3.2 -11.7 protoheme IX farnesyltransferase compare
BPHYT_RS13705 -3.2 -2.7 chorismate synthase compare
BPHYT_RS02610 -3.1 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33030 -3.1 -1.0 hypothetical protein compare
BPHYT_RS17670 -3.1 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03135 -3.1 -8.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS14910 -3.1 -9.2 chorismate mutase compare
BPHYT_RS11390 -3.0 -9.4 penicillin-binding protein 1A compare
BPHYT_RS02955 -3.0 -9.6 formyltetrahydrofolate deformylase compare
BPHYT_RS04720 -3.0 -5.4 transcriptional regulator compare
BPHYT_RS06550 -3.0 -2.8 acetolactate synthase compare
BPHYT_RS17395 -3.0 -2.4 anthranilate synthase subunit II compare
BPHYT_RS20095 -2.9 -1.0 transcriptional regulator compare
BPHYT_RS17715 -2.8 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12530 -2.8 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17890 -2.7 -1.5 shikimate kinase compare
BPHYT_RS17675 -2.7 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33840 -2.7 -3.6 amidophosphoribosyltransferase compare
BPHYT_RS02650 -2.7 -1.5 membrane protein compare
BPHYT_RS17390 -2.6 -15.7 anthranilate synthase subunit I compare
BPHYT_RS02860 -2.6 -0.8 membrane protein compare
BPHYT_RS05960 -2.6 -4.9 endoribonuclease L-PSP compare
BPHYT_RS14865 -2.6 -1.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02525 -2.5 -7.5 membrane protein compare
BPHYT_RS06405 -2.4 -4.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS16210 -2.4 -3.7 peptidase compare
BPHYT_RS02765 -2.4 -1.3 cytochrome BD oxidase subunit I compare
BPHYT_RS06610 -2.3 -1.1 triosephosphate isomerase compare
BPHYT_RS14275 -2.3 -2.2 hypothetical protein compare
BPHYT_RS04080 -2.3 -4.0 chloride channel protein compare
BPHYT_RS04010 -2.3 -1.3 glycosyl transferase compare
BPHYT_RS17700 -2.2 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06155 -2.2 -5.7 DEAD/DEAH box helicase compare
BPHYT_RS16245 -2.2 -2.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS01630 -2.2 -2.4 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS26685 -2.2 -1.0 precorrin-8X methylmutase compare
BPHYT_RS14900 -2.2 -2.3 prephenate dehydrogenase compare
BPHYT_RS02665 -2.2 -11.7 MFS transporter compare
BPHYT_RS18655 -2.2 -3.8 3-oxoacyl-ACP synthase compare
BPHYT_RS16435 -2.2 -13.9 alcohol dehydrogenase compare
BPHYT_RS17520 -2.2 -2.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS05010 -2.2 -4.0 RpiR family transcriptional regulator compare
BPHYT_RS21495 -2.2 -1.0 ABC transporter compare
BPHYT_RS29620 -2.1 -1.0 hypothetical protein compare
BPHYT_RS03645 -2.1 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS08960 -2.1 -1.2 threonine synthase compare
BPHYT_RS16710 -2.1 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06045 -2.1 -5.9 transaldolase compare
BPHYT_RS33130 -2.0 -2.3 transcriptional regulator compare
BPHYT_RS02760 -2.0 -0.9 cytochrome BD oxidase subunit II compare
BPHYT_RS16430 -2.0 -11.4 cytochrome C compare
BPHYT_RS18970 -2.0 -7.1 chemotaxis protein compare
BPHYT_RS36300 -2.0 -10.1 hypothetical protein compare
BPHYT_RS10100 -1.9 -3.8 dihydroxy-acid dehydratase compare
BPHYT_RS03495 -1.9 -4.4 hypothetical protein compare
BPHYT_RS17185 -1.9 -5.7 N-acetylglutamate synthase compare
BPHYT_RS18845 -1.9 -10.5 flagellar hook-associated protein FlgK conserved
BPHYT_RS12465 -1.9 -1.1 inositol monophosphatase compare
BPHYT_RS19325 -1.9 -2.5 glycine cleavage system H protein compare
BPHYT_RS04335 -1.9 -1.4 membrane protein compare
BPHYT_RS18840 -1.9 -7.4 flagellar hook-associated protein FlgL compare
BPHYT_RS16345 -1.8 -2.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18965 -1.8 -1.5 chemotaxis protein CheY compare
BPHYT_RS18995 -1.8 -8.3 purine-binding chemotaxis protein compare
BPHYT_RS17405 -1.8 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS16090 -1.8 -1.5 hypothetical protein compare
BPHYT_RS18835 -1.8 -1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS25980 -1.8 -0.8 urea carboxylase compare
BPHYT_RS01455 -1.7 -1.1 peptide deformylase compare
BPHYT_RS13080 -1.7 -1.3 hypothetical protein compare
BPHYT_RS03405 -1.7 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS01500 -1.7 -11.6 7-cyano-7-deazaguanine synthase compare
BPHYT_RS32860 -1.7 -1.0 hypothetical protein compare
BPHYT_RS32210 -1.7 -1.1 hypothetical protein compare
BPHYT_RS02595 -1.7 -1.1 sulfurtransferase compare
BPHYT_RS11555 -1.7 -2.0 allantoinase compare
BPHYT_RS18825 -1.7 -6.2 flagellar biosynthesis protein FliP compare
BPHYT_RS09315 -1.7 -0.5 chemotaxis protein CheY compare
BPHYT_RS19015 -1.7 -8.3 flagellar motor protein MotA compare
BPHYT_RS22400 -1.7 -1.2 hypothetical protein compare
BPHYT_RS06345 -1.7 -5.5 sensor histidine kinase compare
BPHYT_RS19000 -1.7 -8.9 chemotaxis protein CheA compare
BPHYT_RS16340 -1.7 -3.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS18980 -1.6 -6.3 chemotaxis protein CheR compare
BPHYT_RS06540 -1.6 -4.8 RNA polymerase sigma70 factor compare
BPHYT_RS04990 -1.6 -1.7 hypothetical protein compare
BPHYT_RS33920 -1.6 -3.7 type II citrate synthase compare
BPHYT_RS18610 -1.6 -6.9 lytic transglycosylase compare
BPHYT_RS19010 -1.6 -8.6 flagellar motor protein MotB compare
BPHYT_RS06975 -1.6 -1.0 glutamate racemase compare
BPHYT_RS03400 -1.6 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS15415 -1.6 -7.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08125 -1.6 -6.6 ATPase compare
BPHYT_RS01965 -1.6 -1.1 tRNA-Ala compare
BPHYT_RS06065 -1.6 -8.6 cytochrome C compare
BPHYT_RS28930 -1.6 -0.7 chromosome partitioning protein ParA compare
BPHYT_RS01280 -1.6 -2.0 hypothetical protein compare
BPHYT_RS22190 -1.6 -0.9 nucleoid-structuring protein H-NS compare
BPHYT_RS22455 -1.6 -0.7 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS25500 -1.6 -1.2 hypothetical protein compare
BPHYT_RS16990 -1.6 -6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS02755 -1.6 -1.0 cyd operon protein YbgT compare
BPHYT_RS07835 -1.5 -1.3 muconolactone delta-isomerase compare
BPHYT_RS19085 -1.5 -4.9 flagellin compare
BPHYT_RS17530 -1.5 -4.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03170 -1.5 -1.7 membrane protein compare
BPHYT_RS22420 -1.5 -1.0 membrane protein compare
BPHYT_RS05025 -1.5 -3.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17755 -1.5 -5.3 ABC transporter substrate-binding protein compare
BPHYT_RS17050 -1.5 -1.4 hypothetical protein compare
BPHYT_RS14190 -1.5 -2.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08950 -1.5 -5.5 aminotransferase compare
BPHYT_RS09160 -1.5 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS03280 -1.5 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS06070 -1.5 -6.5 cytochrome C compare
BPHYT_RS11395 -1.5 -2.0 hypothetical protein compare
BPHYT_RS17445 -1.5 -3.0 GTP-binding protein YchF compare
BPHYT_RS24315 -1.5 -1.4 phosphoribosyltransferase compare
BPHYT_RS33610 -1.5 -1.1 DNA polymerase I compare
BPHYT_RS18705 -1.5 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16840 -1.5 -1.0 transketolase compare
BPHYT_RS31055 -1.5 -1.7 glycosyl transferase compare
BPHYT_RS16075 -1.5 -8.6 D-arabinitol 4-dehydrogenase compare
BPHYT_RS14400 -1.5 -2.4 anti-sigma factor compare
BPHYT_RS16085 -1.4 -2.2 DeoR faimly transcriptional regulator compare
BPHYT_RS25095 -1.4 -2.1 AraC family transcriptional regulator compare
BPHYT_RS22205 -1.4 -2.4 hypothetical protein compare
BPHYT_RS20165 -1.4 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS01510 -1.4 -5.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS10305 -1.4 -1.2 hypothetical protein compare
BPHYT_RS10710 -1.4 -1.3 sensor histidine kinase compare
BPHYT_RS12940 -1.4 -5.8 signal transduction histidine kinase compare
BPHYT_RS09905 -1.4 -1.1 hypothetical protein compare
BPHYT_RS36055 -1.4 -3.2 hypothetical protein compare
BPHYT_RS19130 -1.4 -3.3 acetyltransferase compare
BPHYT_RS05035 -1.4 -3.9 sugar ABC transporter permease compare
BPHYT_RS08815 -1.4 -4.6 L-asparaginase (EC 3.5.1.1) (from data) compare
BPHYT_RS31590 -1.4 -1.2 hypothetical protein compare
BPHYT_RS10345 -1.4 -0.7 flagellar motor protein MotB compare
BPHYT_RS08995 -1.4 -1.1 hypothetical protein compare
BPHYT_RS03685 -1.4 -2.3 Tol system periplasmic component YbgF compare
BPHYT_RS29815 -1.4 -1.4 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS19545 -1.4 -3.7 nuclear protein SET compare
BPHYT_RS12055 -1.4 -8.3 phosphoenolpyruvate synthase compare
BPHYT_RS09145 -1.3 -7.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS09500 -1.3 -3.6 glucose-6-phosphate isomerase compare
BPHYT_RS18780 -1.3 -4.5 flagellar motor switch protein FliG compare
BPHYT_RS01685 -1.3 -6.0 phytanoyl-CoA dioxygenase compare
BPHYT_RS04730 -1.3 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS18280 -1.3 -5.0 TetR family transcriptional regulator compare
BPHYT_RS05020 -1.3 -4.1 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS05225 -1.3 -5.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS25875 -1.3 -0.8 type III secretion protein compare
BPHYT_RS02975 -1.3 -0.9 membrane protein compare
BPHYT_RS36400 -1.3 -1.2 hypothetical protein compare
BPHYT_RS05290 -1.3 -0.8 hypothetical protein compare
BPHYT_RS26855 -1.3 -1.4 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS16180 -1.3 -0.8 TetR family transcriptional regulator compare
BPHYT_RS08150 -1.3 -0.8 membrane protein compare
BPHYT_RS17040 -1.3 -2.7 membrane protein compare
BPHYT_RS28920 -1.3 -0.9 cellulose synthase compare
BPHYT_RS13315 -1.3 -1.7 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS29810 -1.3 -0.9 hexapeptide transferase compare


Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms