Experiment set29S531 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS05030 -7.3 -5.0 sugar ABC transporter permease compare
BPHYT_RS02610 -7.1 -4.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16270 -6.2 -4.6 phosphoglycerate kinase compare
BPHYT_RS04955 -5.6 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS17690 -5.3 -11.3 imidazole glycerol phosphate synthase compare
BPHYT_RS05010 -5.0 -3.5 RpiR family transcriptional regulator compare
BPHYT_RS17395 -5.0 -3.2 anthranilate synthase subunit II compare
BPHYT_RS33875 -4.8 -9.9 tryptophan synthase subunit alpha compare
BPHYT_RS15920 -4.8 -13.4 argininosuccinate synthase compare
BPHYT_RS16835 -4.6 -8.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17670 -4.6 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33835 -4.6 -6.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS03150 -4.6 -12.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -4.6 -8.2 phosphoserine aminotransferase compare
BPHYT_RS02590 -4.5 -9.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33865 -4.5 -9.1 tryptophan synthase alpha chain compare
BPHYT_RS17680 -4.4 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17685 -4.4 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33900 -4.3 -13.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS09500 -4.3 -7.7 glucose-6-phosphate isomerase compare
BPHYT_RS01590 -4.3 -6.7 methionine biosynthesis protein MetW compare
BPHYT_RS06900 -4.3 -7.1 aspartate aminotransferase compare
BPHYT_RS33915 -4.3 -7.8 isopropylmalate isomerase compare
BPHYT_RS18320 -4.3 -8.6 orotate phosphoribosyltransferase compare
BPHYT_RS05225 -4.2 -9.3 phosphoenolpyruvate carboxylase compare
BPHYT_RS08955 -4.2 -5.0 homoserine dehydrogenase compare
BPHYT_RS17675 -4.2 -3.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17400 -4.2 -8.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS06555 -4.2 -10.7 ketol-acid reductoisomerase compare
BPHYT_RS13705 -4.2 -4.0 chorismate synthase compare
BPHYT_RS06545 -4.1 -11.8 acetolactate synthase compare
BPHYT_RS14895 -4.1 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17855 -4.1 -16.3 glutamate synthase compare
BPHYT_RS17390 -4.1 -18.2 anthranilate synthase subunit I compare
BPHYT_RS16735 -4.0 -7.4 phosphogluconate dehydratase compare
BPHYT_RS17405 -4.0 -1.8 indole-3-glycerol phosphate synthase compare
BPHYT_RS17885 -4.0 -6.0 3-dehydroquinate synthase compare
BPHYT_RS33880 -3.9 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15915 -3.9 -11.7 ornithine carbamoyltransferase compare
BPHYT_RS04725 -3.9 -10.0 sulfite reductase compare
BPHYT_RS16905 -3.8 -6.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS04745 -3.7 -6.9 sulfate adenylyltransferase compare
BPHYT_RS14910 -3.7 -13.6 chorismate mutase compare
BPHYT_RS05730 -3.7 -1.7 hypothetical protein compare
BPHYT_RS01595 -3.7 -12.6 homoserine O-acetyltransferase compare
BPHYT_RS04740 -3.7 -8.0 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS04370 -3.6 -2.3 glycosyl transferase compare
BPHYT_RS12845 -3.5 -18.2 ATPase compare
BPHYT_RS08960 -3.4 -2.3 threonine synthase compare
BPHYT_RS16245 -3.3 -2.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17700 -3.2 -5.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17715 -3.1 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06610 -3.0 -1.9 triosephosphate isomerase compare
BPHYT_RS33645 -2.9 -6.0 homoserine kinase compare
BPHYT_RS06045 -2.8 -9.4 transaldolase compare
BPHYT_RS17890 -2.8 -2.6 shikimate kinase compare
BPHYT_RS06175 -2.8 -3.8 LPS biosynthesis compare
BPHYT_RS05020 -2.8 -9.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS04720 -2.7 -6.2 transcriptional regulator compare
BPHYT_RS12530 -2.7 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS18705 -2.7 -2.5 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS14190 -2.6 -4.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS10100 -2.6 -5.5 dihydroxy-acid dehydratase compare
BPHYT_RS05035 -2.4 -6.1 sugar ABC transporter permease compare
BPHYT_RS05040 -2.4 -5.0 sugar ABC transporter ATPase compare
BPHYT_RS24590 -2.4 -1.8 DeoR faimly transcriptional regulator compare
BPHYT_RS16840 -2.4 -1.6 transketolase compare
BPHYT_RS09515 -2.3 -1.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04730 -2.3 -7.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14855 -2.2 -1.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33840 -2.2 -6.5 amidophosphoribosyltransferase compare
BPHYT_RS12985 -2.1 -1.4 amino acid acetyltransferase compare
BPHYT_RS25980 -2.1 -1.6 urea carboxylase compare
BPHYT_RS06190 -2.0 -3.4 heptosyltransferase compare
BPHYT_RS14900 -2.0 -3.5 prephenate dehydrogenase compare
BPHYT_RS04965 -2.0 -8.1 ATP-binding protein compare
BPHYT_RS03400 -2.0 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS04285 -2.0 -2.2 rhamnosyltransferase compare
BPHYT_RS24315 -1.9 -2.7 phosphoribosyltransferase compare
BPHYT_RS06405 -1.9 -4.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS03535 -1.9 -5.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS29810 -1.9 -1.9 hexapeptide transferase compare
BPHYT_RS05025 -1.8 -3.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS12465 -1.8 -2.3 inositol monophosphatase compare
BPHYT_RS36600 -1.8 -3.2 lytic transglycosylase compare
BPHYT_RS14865 -1.7 -1.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15670 -1.7 -5.1 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS09145 -1.7 -9.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS20070 -1.7 -2.4 hypothetical protein compare
BPHYT_RS05960 -1.5 -5.1 endoribonuclease L-PSP compare
BPHYT_RS02570 -1.5 -4.3 phosphocarrier protein HPr compare
BPHYT_RS33920 -1.5 -4.9 type II citrate synthase compare
BPHYT_RS06930 -1.5 -4.4 hypothetical protein compare
BPHYT_RS26465 -1.5 -1.6 metallophosphoesterase compare
BPHYT_RS14845 -1.4 -0.9 cysteine synthase compare
BPHYT_RS03625 -1.4 -7.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS04385 -1.4 -2.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS28575 -1.4 -1.1 transcriptional regulator compare
BPHYT_RS08150 -1.4 -1.4 membrane protein compare
BPHYT_RS17920 -1.4 -1.5 protein CyaY compare
BPHYT_RS33580 -1.4 -4.0 geranyltranstransferase compare
BPHYT_RS36275 -1.3 -1.5 hypothetical protein compare
BPHYT_RS29620 -1.3 -1.3 hypothetical protein compare
BPHYT_RS23455 -1.3 -1.2 phosphorylase compare
BPHYT_RS14195 -1.3 -1.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS11825 -1.3 -1.4 cytosine deaminase compare
BPHYT_RS03645 -1.3 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS20520 -1.2 -1.7 transcriptional regulator compare
BPHYT_RS04920 -1.2 -3.1 aspartate 1-decarboxylase compare
BPHYT_RS33805 -1.2 -1.2 hypothetical protein compare
BPHYT_RS26685 -1.2 -1.1 precorrin-8X methylmutase compare
BPHYT_RS30085 -1.2 -1.7 hypothetical protein compare
BPHYT_RS16090 -1.2 -1.6 hypothetical protein compare
BPHYT_RS02710 -1.2 -1.2 hypothetical protein compare
BPHYT_RS16675 -1.2 -1.0 dihydroorotase compare
BPHYT_RS11635 -1.2 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS03570 -1.2 -4.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS10095 -1.1 -1.9 integrase compare
BPHYT_RS08950 -1.1 -4.9 aminotransferase compare
BPHYT_RS15570 -1.1 -6.0 NAD-dependent dehydratase compare
BPHYT_RS15075 -1.1 -1.2 dihydrokaempferol 4-reductase compare
BPHYT_RS15650 -1.1 -7.3 quinolinate synthetase compare
BPHYT_RS16175 -1.1 -1.8 hemolysin D compare
BPHYT_RS01455 -1.1 -1.2 peptide deformylase compare
BPHYT_RS08000 -1.1 -2.5 antibiotic biosynthesis monooxygenase compare
BPHYT_RS27060 -1.1 -1.9 photosystem reaction center subunit H compare
BPHYT_RS08565 -1.1 -0.6 dihydroorotate dehydrogenase compare
BPHYT_RS14550 -1.1 -1.0 tRNA-Asn compare
BPHYT_RS33370 -1.1 -1.8 LysR family transcriptional regulator compare
BPHYT_RS12150 -1.1 -6.7 PII uridylyl-transferase compare
BPHYT_RS15620 -1.1 -2.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08850 -1.0 -0.6 transcriptional regulator compare
BPHYT_RS03520 -1.0 -2.1 ATP--cobalamin adenosyltransferase compare
BPHYT_RS15645 -1.0 -6.1 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS12840 -1.0 -1.8 pyruvate dehydrogenase compare
BPHYT_RS30795 -1.0 -1.3 short-chain dehydrogenase compare
BPHYT_RS17100 -1.0 -3.5 RNA pyrophosphohydrolase compare
BPHYT_RS22030 -1.0 -2.2 peptide ABC transporter ATP-binding protein compare
BPHYT_RS02690 -1.0 -6.0 protoheme IX farnesyltransferase compare
BPHYT_RS24500 -1.0 -1.2 histidine kinase compare
BPHYT_RS17520 -1.0 -2.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS19890 -1.0 -1.2 hypothetical protein compare
BPHYT_RS05485 -0.9 -3.2 nitrogen regulatory protein P-II 1 compare
BPHYT_RS02905 -0.9 -7.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS15640 -0.9 -6.7 L-aspartate oxidase compare
BPHYT_RS28595 -0.9 -1.1 glyoxalase compare
BPHYT_RS08245 -0.9 -3.3 anti-sigma factor compare
BPHYT_RS04585 -0.9 -2.2 hypothetical protein compare
BPHYT_RS18280 -0.9 -4.4 TetR family transcriptional regulator compare
BPHYT_RS07840 -0.9 -2.0 muconate cycloisomerase compare
BPHYT_RS29630 -0.9 -1.7 SAM-dependent methyltransferase compare
BPHYT_RS06685 -0.9 -0.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS03640 -0.9 -0.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS28025 -0.9 -1.6 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS03495 -0.9 -3.7 hypothetical protein compare
BPHYT_RS28055 -0.9 -2.6 membrane protein compare
BPHYT_RS30255 -0.9 -1.6 hypothetical protein compare
BPHYT_RS29520 -0.9 -0.8 hypothetical protein compare
BPHYT_RS23940 -0.9 -1.2 GntR family transcriptional regulator compare
BPHYT_RS00150 -0.9 -2.4 DEAD/DEAH box helicase compare
BPHYT_RS11805 -0.9 -1.2 hypothetical protein compare
BPHYT_RS20040 -0.9 -3.4 amidohydrolase compare
BPHYT_RS15710 -0.8 -0.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS32200 -0.8 -1.9 lytic transglycosylase compare
BPHYT_RS01660 -0.8 -2.3 hypothetical protein compare
BPHYT_RS10850 -0.8 -1.2 LysR family transcriptional regulator compare
BPHYT_RS20845 -0.8 -1.5 peroxidase compare
BPHYT_RS23155 -0.8 -1.0 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS23920 -0.8 -1.7 malonate decarboxylase subunit beta compare
BPHYT_RS24965 -0.8 -1.3 hypothetical protein compare
BPHYT_RS06600 -0.8 -1.2 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS04595 -0.8 -1.7 cytoplasmic protein compare
BPHYT_RS13835 -0.8 -1.1 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS36360 -0.8 -1.7 hypothetical protein compare
BPHYT_RS31630 -0.8 -1.7 hypothetical protein compare
BPHYT_RS03110 -0.8 -1.9 MarR family transcriptional regulator compare
BPHYT_RS04430 -0.8 -1.6 amino acid ABC transporter ATPase compare
BPHYT_RS14605 -0.8 -2.5 sodium transporter compare
BPHYT_RS26560 -0.8 -1.2 murein hydrolase transporter LrgA compare
BPHYT_RS21460 -0.8 -1.8 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS03280 -0.8 -0.8 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS29840 -0.8 -1.3 polysaccharide biosynthesis protein compare
BPHYT_RS33060 -0.8 -1.6 hypothetical protein compare
BPHYT_RS20355 -0.8 -1.4 ABC transporter substrate-binding protein compare
BPHYT_RS31450 -0.8 -3.2 hypothetical protein compare
BPHYT_RS18340 -0.8 -0.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS31890 -0.8 -0.9 transposase compare
BPHYT_RS24495 -0.8 -1.6 transcriptional regulator compare
BPHYT_RS30140 -0.8 -0.8 3-methylitaconate isomerase compare
BPHYT_RS17380 -0.8 -4.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS04015 -0.8 -1.4 glycosyl transferase compare
BPHYT_RS26025 -0.8 -0.7 hypothetical protein compare
BPHYT_RS10875 -0.7 -1.7 transporter compare
BPHYT_RS09895 -0.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS00690 -0.7 -0.9 transcriptional regulator compare
BPHYT_RS13000 -0.7 -2.5 phosphodiesterase compare
BPHYT_RS24685 -0.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS25135 -0.7 -1.3 hypothetical protein compare
BPHYT_RS25270 -0.7 -1.3 multidrug MFS transporter compare
BPHYT_RS14400 -0.7 -2.0 anti-sigma factor compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Glucose across organisms