Experiment set29S489 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -5.7 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS03150 -5.6 -11.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS18320 -5.5 -3.8 orotate phosphoribosyltransferase compare
BPHYT_RS01595 -5.1 -13.6 homoserine O-acetyltransferase compare
BPHYT_RS14915 -5.0 -8.3 phosphoserine aminotransferase compare
BPHYT_RS16270 -4.9 -3.1 phosphoglycerate kinase compare
BPHYT_RS06555 -4.9 -7.4 ketol-acid reductoisomerase compare
BPHYT_RS33835 -4.6 -8.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15920 -4.6 -9.8 argininosuccinate synthase compare
BPHYT_RS15915 -4.6 -8.2 ornithine carbamoyltransferase compare
BPHYT_RS16835 -4.4 -6.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02590 -4.3 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06545 -4.2 -7.0 acetolactate synthase compare
BPHYT_RS35885 -4.0 -5.5 hypothetical protein compare
BPHYT_RS17885 -4.0 -3.9 3-dehydroquinate synthase compare
BPHYT_RS17855 -4.0 -16.7 glutamate synthase compare
BPHYT_RS33865 -3.9 -7.1 tryptophan synthase alpha chain compare
BPHYT_RS17685 -3.9 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17405 -3.9 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS02610 -3.8 -5.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS08955 -3.8 -2.6 homoserine dehydrogenase compare
BPHYT_RS12845 -3.8 -11.6 ATPase compare
BPHYT_RS17400 -3.8 -7.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS16735 -3.7 -7.5 phosphogluconate dehydratase compare
BPHYT_RS17675 -3.7 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS10240 -3.7 -1.2 translation initiation inhibitor compare
BPHYT_RS33875 -3.6 -6.2 tryptophan synthase subunit alpha compare
BPHYT_RS07570 -3.6 -1.1 hypothetical protein compare
BPHYT_RS16710 -3.6 -1.1 LysR family transcriptional regulator compare
BPHYT_RS33880 -3.6 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS02045 -3.4 -7.0 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS14895 -3.4 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS29620 -3.3 -1.1 hypothetical protein compare
BPHYT_RS16905 -3.3 -4.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17670 -3.3 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS05010 -3.2 -4.3 RpiR family transcriptional regulator compare
BPHYT_RS17240 -3.2 -1.0 cell division protein FtsW compare
BPHYT_RS04335 -3.2 -1.7 membrane protein compare
BPHYT_RS02690 -3.2 -10.4 protoheme IX farnesyltransferase compare
BPHYT_RS17390 -3.1 -15.5 anthranilate synthase subunit I compare
BPHYT_RS06900 -3.1 -4.7 aspartate aminotransferase compare
BPHYT_RS33645 -3.1 -4.1 homoserine kinase compare
BPHYT_RS17715 -3.0 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17680 -3.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03280 -2.9 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS02860 -2.8 -0.9 membrane protein compare
BPHYT_RS33915 -2.8 -5.9 isopropylmalate isomerase compare
BPHYT_RS18760 -2.8 -1.9 flagellar biosynthesis protein FliT compare
BPHYT_RS16090 -2.7 -1.7 hypothetical protein compare
BPHYT_RS14865 -2.7 -1.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16345 -2.7 -2.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS13705 -2.7 -2.9 chorismate synthase compare
BPHYT_RS17945 -2.7 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS33900 -2.7 -9.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS25500 -2.6 -1.4 hypothetical protein compare
BPHYT_RS30450 -2.6 -0.8 ABC transporter permease compare
BPHYT_RS18590 -2.6 -0.8 hypothetical protein compare
BPHYT_RS30995 -2.5 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS35480 -2.5 -2.2 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS17395 -2.5 -2.3 anthranilate synthase subunit II compare
BPHYT_RS03135 -2.5 -8.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS14900 -2.5 -2.4 prephenate dehydrogenase compare
BPHYT_RS12530 -2.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS32225 -2.4 -1.8 hypothetical protein compare
BPHYT_RS16085 -2.4 -4.0 DeoR faimly transcriptional regulator compare
BPHYT_RS06915 -2.4 -2.1 hypothetical protein compare
BPHYT_RS33920 -2.4 -3.6 type II citrate synthase compare
BPHYT_RS04955 -2.4 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS29540 -2.4 -1.1 aldolase compare
BPHYT_RS33840 -2.4 -4.5 amidophosphoribosyltransferase compare
BPHYT_RS21910 -2.4 -2.3 ABC transporter permease compare
BPHYT_RS08235 -2.4 -0.7 nucleoprotein, Hfg, host factor I compare
BPHYT_RS18255 -2.4 -2.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS14910 -2.3 -10.2 chorismate mutase compare
BPHYT_RS17380 -2.3 -8.6 ribulose-phosphate 3-epimerase compare
BPHYT_RS06410 -2.3 -2.6 transcriptional regulator compare
BPHYT_RS03645 -2.3 -1.4 tRNA dimethylallyltransferase compare
BPHYT_RS10100 -2.3 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS05025 -2.2 -4.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS18705 -2.2 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS36300 -2.2 -7.2 hypothetical protein compare
BPHYT_RS02665 -2.2 -10.7 MFS transporter compare
BPHYT_RS05960 -2.2 -6.7 endoribonuclease L-PSP compare
BPHYT_RS34410 -2.2 -1.3 hypothetical protein compare
BPHYT_RS17890 -2.1 -1.4 shikimate kinase compare
BPHYT_RS08960 -2.1 -1.1 threonine synthase compare
BPHYT_RS34295 -2.1 -0.9 fimbrial protein compare
BPHYT_RS04430 -2.0 -1.8 amino acid ABC transporter ATPase compare
BPHYT_RS17700 -2.0 -2.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17520 -2.0 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06375 -2.0 -2.9 ribonuclease compare
BPHYT_RS16445 -2.0 -2.0 RNA helicase compare
BPHYT_RS12465 -2.0 -1.1 inositol monophosphatase compare
BPHYT_RS06070 -1.9 -8.0 cytochrome C compare
BPHYT_RS18655 -1.9 -3.8 3-oxoacyl-ACP synthase compare
BPHYT_RS16245 -1.9 -2.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14190 -1.9 -2.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS02595 -1.9 -1.1 sulfurtransferase compare
BPHYT_RS03065 -1.9 -2.0 LuxR family transcriptional regulator compare
BPHYT_RS31470 -1.9 -1.8 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS10400 -1.9 -0.8 taurine ABC transporter permease compare
BPHYT_RS30775 -1.9 -1.4 gluconate 2-dehydrogenase compare
BPHYT_RS28360 -1.8 -0.8 carboxymuconolactone decarboxylase compare
BPHYT_RS11075 -1.8 -2.0 membrane protein compare
BPHYT_RS04720 -1.8 -5.6 transcriptional regulator compare
BPHYT_RS10395 -1.8 -1.2 sulfonate ABC transporter compare
BPHYT_RS24010 -1.8 -1.9 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS03685 -1.8 -1.5 Tol system periplasmic component YbgF compare
BPHYT_RS31590 -1.8 -1.2 hypothetical protein compare
BPHYT_RS06065 -1.8 -8.6 cytochrome C compare
BPHYT_RS35310 -1.8 -1.4 GCN5 family N-acetyltransferase compare
BPHYT_RS01965 -1.8 -1.2 tRNA-Ala compare
BPHYT_RS10650 -1.7 -1.1 membrane protein compare
BPHYT_RS17100 -1.7 -3.5 RNA pyrophosphohydrolase compare
BPHYT_RS09385 -1.7 -0.7 FAD-dependent oxidoreductase compare
BPHYT_RS06975 -1.7 -1.1 glutamate racemase compare
BPHYT_RS04730 -1.7 -5.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04595 -1.7 -1.8 cytoplasmic protein compare
BPHYT_RS08340 -1.7 -1.3 chemotaxis protein CheY compare
BPHYT_RS06610 -1.7 -1.0 triosephosphate isomerase compare
BPHYT_RS03495 -1.7 -4.0 hypothetical protein compare
BPHYT_RS11765 -1.7 -0.9 polyamine ABC transporter permease compare
BPHYT_RS09315 -1.7 -0.5 chemotaxis protein CheY compare
BPHYT_RS25815 -1.7 -1.0 deoxyribose-phosphate aldolase compare
BPHYT_RS12615 -1.7 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS14400 -1.7 -2.1 anti-sigma factor compare
BPHYT_RS23940 -1.6 -1.0 GntR family transcriptional regulator compare
BPHYT_RS12925 -1.6 -0.9 exodeoxyribonuclease III compare
BPHYT_RS16990 -1.6 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS06405 -1.6 -2.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS12150 -1.6 -9.5 PII uridylyl-transferase compare
BPHYT_RS03110 -1.6 -2.3 MarR family transcriptional regulator compare
BPHYT_RS09465 -1.6 -1.6 transcriptional regulator compare
BPHYT_RS13835 -1.6 -1.1 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS11795 -1.6 -0.8 membrane protein compare
BPHYT_RS17165 -1.6 -3.0 cell division protein ZapD compare
BPHYT_RS16075 -1.6 -8.5 D-arabinitol 4-dehydrogenase compare
BPHYT_RS13890 -1.6 -2.0 RpiR family transcriptional regulator compare
BPHYT_RS01455 -1.6 -1.0 peptide deformylase compare
BPHYT_RS29235 -1.6 -1.4 cell shape determination protein CcmA compare
BPHYT_RS10670 -1.6 -0.9 catechol 1,2-dioxygenase compare
BPHYT_RS17265 -1.6 -1.0 cell division protein compare
BPHYT_RS11360 -1.5 -1.2 hypothetical protein compare
BPHYT_RS01500 -1.5 -10.3 7-cyano-7-deazaguanine synthase compare
BPHYT_RS10600 -1.5 -2.8 LysR family transcriptional regulator compare
BPHYT_RS02005 -1.5 -1.1 diguanylate phosphodiesterase compare
BPHYT_RS36275 -1.5 -1.3 hypothetical protein compare
BPHYT_RS02525 -1.5 -4.3 membrane protein compare
BPHYT_RS22360 -1.5 -1.7 response regulator receiver compare
BPHYT_RS09650 -1.5 -0.8 hypothetical protein compare
BPHYT_RS17445 -1.5 -3.2 GTP-binding protein YchF compare
BPHYT_RS11170 -1.5 -0.9 hypothetical protein compare
BPHYT_RS04095 -1.5 -0.9 SAM-dependent methyltransferase PhcB compare
BPHYT_RS01505 -1.5 -1.9 7-cyano-7-deazaguanine reductase compare
BPHYT_RS30990 -1.5 -1.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS10135 -1.5 -0.8 hypothetical protein compare
BPHYT_RS28905 -1.5 -1.1 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS06350 -1.5 -1.5 chemotaxis protein CheY compare
BPHYT_RS11555 -1.5 -1.8 allantoinase compare
BPHYT_RS02285 -1.5 -3.1 cell division protein compare
BPHYT_RS28705 -1.5 -0.8 IclR family transcriptional regulator compare
BPHYT_RS29855 -1.5 -0.8 protein-tyrosine-phosphatase compare
BPHYT_RS11685 -1.5 -0.8 phasin family protein compare
BPHYT_RS11480 -1.5 -2.2 heme ABC transporter ATP-binding protein compare
BPHYT_RS20705 -1.5 -2.7 Chase2 sensor protein compare
BPHYT_RS03655 -1.5 -1.2 membrane protein compare
BPHYT_RS10065 -1.5 -1.0 cytochrome C oxidase subunit I compare
BPHYT_RS02010 -1.5 -1.6 copper homeostasis protein CutC compare
BPHYT_RS02685 -1.5 -8.4 cytochrome C oxidase subunit I compare
BPHYT_RS26685 -1.5 -0.9 precorrin-8X methylmutase compare
BPHYT_RS08950 -1.5 -5.5 aminotransferase compare
BPHYT_RS16435 -1.5 -8.4 alcohol dehydrogenase compare
BPHYT_RS13610 -1.4 -2.6 MerR family transcriptional regulator compare
BPHYT_RS07265 -1.4 -1.9 3-hydroxyanthranilate 3,4-dioxygenase compare
BPHYT_RS21570 -1.4 -3.8 oxidoreductase compare
BPHYT_RS03330 -1.4 -2.0 hypothetical protein compare
BPHYT_RS05485 -1.4 -2.6 nitrogen regulatory protein P-II 1 compare
BPHYT_RS16340 -1.4 -2.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS24315 -1.4 -1.3 phosphoribosyltransferase compare
BPHYT_RS20935 -1.4 -2.0 dehydrogenase compare
BPHYT_RS01340 -1.4 -2.2 ChrB domain-containing protein compare
BPHYT_RS01920 -1.4 -5.4 AsnC family transcriptional regulator compare
BPHYT_RS20520 -1.4 -1.0 transcriptional regulator compare
BPHYT_RS31255 -1.4 -0.9 cytochrome B561 compare
BPHYT_RS03405 -1.4 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS02955 -1.4 -7.8 formyltetrahydrofolate deformylase compare
BPHYT_RS33870 -1.4 -3.3 DNA methylase N-4 compare
BPHYT_RS04750 -1.4 -2.2 uroporphyrin-III C-methyltransferase compare
BPHYT_RS18995 -1.4 -4.3 purine-binding chemotaxis protein compare
BPHYT_RS09480 -1.4 -0.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS28410 -1.4 -1.8 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS03170 -1.4 -2.0 membrane protein compare
BPHYT_RS33765 -1.4 -0.7 membrane protein compare
BPHYT_RS23570 -1.3 -2.5 chemotaxis protein CheY compare
BPHYT_RS07690 -1.3 -1.7 AraC family transcriptional regulator compare
BPHYT_RS10095 -1.3 -1.2 integrase compare
BPHYT_RS11540 -1.3 -1.2 ureidoglycolate hydrolase compare
BPHYT_RS32210 -1.3 -0.9 hypothetical protein compare
BPHYT_RS31960 -1.3 -1.7 hypothetical protein compare
BPHYT_RS02650 -1.3 -1.1 membrane protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms