Experiment set29S488 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.1 -4.9 phosphoglycerate kinase compare
BPHYT_RS17690 -6.4 -8.7 imidazole glycerol phosphate synthase compare
BPHYT_RS17680 -6.2 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17685 -6.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03150 -5.7 -13.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.6 -8.5 argininosuccinate synthase compare
BPHYT_RS06555 -5.3 -8.1 ketol-acid reductoisomerase compare
BPHYT_RS18320 -5.3 -6.3 orotate phosphoribosyltransferase compare
BPHYT_RS17675 -5.2 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33880 -4.8 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16835 -4.8 -5.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33865 -4.7 -8.4 tryptophan synthase alpha chain compare
BPHYT_RS14915 -4.6 -7.0 phosphoserine aminotransferase compare
BPHYT_RS15915 -4.6 -7.6 ornithine carbamoyltransferase compare
BPHYT_RS14895 -4.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -4.4 -3.0 homoserine dehydrogenase compare
BPHYT_RS14050 -4.3 -7.7 UDP pyrophosphate phosphatase compare
BPHYT_RS06545 -4.3 -8.7 acetolactate synthase compare
BPHYT_RS33875 -4.2 -7.8 tryptophan synthase subunit alpha compare
BPHYT_RS33835 -4.2 -10.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS12845 -4.1 -14.4 ATPase compare
BPHYT_RS06900 -4.1 -5.6 aspartate aminotransferase compare
BPHYT_RS02610 -4.0 -6.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02590 -3.9 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17885 -3.8 -5.2 3-dehydroquinate synthase compare
BPHYT_RS17670 -3.8 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS01595 -3.7 -13.9 homoserine O-acetyltransferase compare
BPHYT_RS16905 -3.7 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33645 -3.7 -3.6 homoserine kinase compare
BPHYT_RS12530 -3.6 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04335 -3.6 -2.2 membrane protein compare
BPHYT_RS02690 -3.5 -15.4 protoheme IX farnesyltransferase compare
BPHYT_RS17400 -3.5 -9.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS35885 -3.4 -5.0 hypothetical protein compare
BPHYT_RS04955 -3.4 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS16735 -3.3 -7.0 phosphogluconate dehydratase compare
BPHYT_RS13705 -3.3 -4.8 chorismate synthase compare
BPHYT_RS17945 -3.2 -2.6 cytochrome C biogenesis protein compare
BPHYT_RS17715 -3.1 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17265 -3.1 -1.5 cell division protein compare
BPHYT_RS33920 -3.0 -3.5 type II citrate synthase compare
BPHYT_RS17390 -3.0 -13.8 anthranilate synthase subunit I compare
BPHYT_RS17855 -2.9 -15.5 glutamate synthase compare
BPHYT_RS33840 -2.9 -5.2 amidophosphoribosyltransferase compare
BPHYT_RS09500 -2.9 -6.1 glucose-6-phosphate isomerase compare
BPHYT_RS02860 -2.9 -1.0 membrane protein compare
BPHYT_RS11390 -2.7 -9.7 penicillin-binding protein 1A compare
BPHYT_RS17395 -2.7 -2.7 anthranilate synthase subunit II compare
BPHYT_RS08960 -2.7 -1.7 threonine synthase compare
BPHYT_RS17405 -2.7 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS02525 -2.6 -7.9 membrane protein compare
BPHYT_RS02955 -2.5 -9.5 formyltetrahydrofolate deformylase compare
BPHYT_RS33900 -2.5 -12.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS22190 -2.5 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS14400 -2.5 -4.5 anti-sigma factor compare
BPHYT_RS27330 -2.4 -1.2 hypothetical protein compare
BPHYT_RS12150 -2.4 -13.8 PII uridylyl-transferase compare
BPHYT_RS03135 -2.4 -9.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS16710 -2.3 -1.2 LysR family transcriptional regulator compare
BPHYT_RS16345 -2.3 -3.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02045 -2.3 -6.2 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS06070 -2.3 -9.2 cytochrome C compare
BPHYT_RS16435 -2.3 -13.0 alcohol dehydrogenase compare
BPHYT_RS06975 -2.3 -1.5 glutamate racemase compare
BPHYT_RS06405 -2.3 -3.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS16245 -2.3 -2.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14900 -2.2 -2.8 prephenate dehydrogenase compare
BPHYT_RS06550 -2.2 -2.8 acetolactate synthase compare
BPHYT_RS14910 -2.2 -10.9 chorismate mutase compare
BPHYT_RS02665 -2.2 -12.2 MFS transporter compare
BPHYT_RS06045 -2.2 -8.3 transaldolase compare
BPHYT_RS12465 -2.2 -2.0 inositol monophosphatase compare
BPHYT_RS10100 -2.1 -4.0 dihydroxy-acid dehydratase compare
BPHYT_RS33915 -2.1 -8.1 isopropylmalate isomerase compare
BPHYT_RS06065 -2.1 -10.9 cytochrome C compare
BPHYT_RS06530 -2.1 -2.0 membrane protein compare
BPHYT_RS18995 -2.1 -8.5 purine-binding chemotaxis protein compare
BPHYT_RS04080 -2.1 -5.4 chloride channel protein compare
BPHYT_RS15620 -2.0 -3.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16430 -2.0 -13.6 cytochrome C compare
BPHYT_RS17700 -2.0 -2.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS14865 -2.0 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS11555 -2.0 -2.6 allantoinase compare
BPHYT_RS17520 -2.0 -3.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03655 -2.0 -1.7 membrane protein compare
BPHYT_RS10065 -2.0 -1.6 cytochrome C oxidase subunit I compare
BPHYT_RS05960 -2.0 -5.2 endoribonuclease L-PSP compare
BPHYT_RS12615 -1.9 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS17890 -1.9 -1.9 shikimate kinase compare
BPHYT_RS22910 -1.9 -0.9 hypothetical protein compare
BPHYT_RS14190 -1.9 -4.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS05030 -1.9 -3.5 sugar ABC transporter permease compare
BPHYT_RS18705 -1.9 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS26685 -1.9 -1.3 precorrin-8X methylmutase compare
BPHYT_RS12925 -1.9 -1.1 exodeoxyribonuclease III compare
BPHYT_RS05010 -1.9 -3.6 RpiR family transcriptional regulator compare
BPHYT_RS14275 -1.9 -2.5 hypothetical protein compare
BPHYT_RS28860 -1.8 -0.9 haloacid dehalogenase compare
BPHYT_RS06610 -1.8 -1.1 triosephosphate isomerase compare
BPHYT_RS06155 -1.8 -6.1 DEAD/DEAH box helicase compare
BPHYT_RS01965 -1.8 -1.4 tRNA-Ala compare
BPHYT_RS24285 -1.8 -1.7 TetR family transcriptional regulator compare
BPHYT_RS10095 -1.8 -2.1 integrase compare
BPHYT_RS02640 -1.8 -10.2 cytochrome C oxidase compare
BPHYT_RS15415 -1.8 -8.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS09480 -1.7 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18760 -1.7 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS18655 -1.7 -4.0 3-oxoacyl-ACP synthase compare
BPHYT_RS16210 -1.7 -3.7 peptidase compare
BPHYT_RS06375 -1.7 -3.3 ribonuclease compare
BPHYT_RS16340 -1.7 -4.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS01500 -1.7 -11.9 7-cyano-7-deazaguanine synthase compare
BPHYT_RS28025 -1.7 -1.6 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS16840 -1.7 -1.6 transketolase compare
BPHYT_RS17380 -1.6 -8.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS03535 -1.6 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS19325 -1.6 -2.3 glycine cleavage system H protein compare
BPHYT_RS05490 -1.6 -3.1 porin compare
BPHYT_RS20155 -1.6 -1.4 hypothetical protein compare
BPHYT_RS08245 -1.6 -5.5 anti-sigma factor compare
BPHYT_RS02685 -1.6 -6.5 cytochrome C oxidase subunit I compare
BPHYT_RS09515 -1.6 -1.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03410 -1.6 -2.2 queuine tRNA-ribosyltransferase compare
BPHYT_RS02650 -1.6 -1.4 membrane protein compare
BPHYT_RS28360 -1.6 -1.0 carboxymuconolactone decarboxylase compare
BPHYT_RS07325 -1.6 -0.7 GntR family transcriptional regulator compare
BPHYT_RS12985 -1.6 -1.0 amino acid acetyltransferase compare
BPHYT_RS31910 -1.5 -1.3 hypothetical protein compare
BPHYT_RS24495 -1.5 -1.8 transcriptional regulator compare
BPHYT_RS02975 -1.5 -1.4 membrane protein compare
BPHYT_RS04720 -1.5 -3.5 transcriptional regulator compare
BPHYT_RS05905 -1.5 -1.2 hypothetical protein compare
BPHYT_RS03280 -1.5 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS17445 -1.5 -3.2 GTP-binding protein YchF compare
BPHYT_RS07570 -1.5 -1.0 hypothetical protein compare
BPHYT_RS36300 -1.5 -10.9 hypothetical protein compare
BPHYT_RS03495 -1.5 -4.3 hypothetical protein compare
BPHYT_RS17530 -1.5 -4.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS30750 -1.5 -1.6 GntR family transcriptional regulator compare
BPHYT_RS01505 -1.5 -1.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS18970 -1.5 -7.7 chemotaxis protein compare
BPHYT_RS06540 -1.5 -4.4 RNA polymerase sigma70 factor compare
BPHYT_RS05485 -1.5 -3.6 nitrogen regulatory protein P-II 1 compare
BPHYT_RS19000 -1.4 -6.6 chemotaxis protein CheA compare
BPHYT_RS03110 -1.4 -2.5 MarR family transcriptional regulator compare
BPHYT_RS36220 -1.4 -1.3 hypothetical protein compare
BPHYT_RS06410 -1.4 -2.6 transcriptional regulator compare
BPHYT_RS18985 -1.4 -2.8 hypothetical protein compare
BPHYT_RS02760 -1.4 -0.8 cytochrome BD oxidase subunit II compare
BPHYT_RS14755 -1.4 -1.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS08125 -1.4 -6.5 ATPase compare
BPHYT_RS08950 -1.4 -5.0 aminotransferase compare
BPHYT_RS19435 -1.4 -2.8 16S rRNA methyltransferase compare
BPHYT_RS05025 -1.4 -3.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS07085 -1.4 -2.1 LysR family transcriptional regulator compare
BPHYT_RS02180 -1.4 -2.3 hypothetical protein compare
BPHYT_RS16990 -1.4 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS03645 -1.4 -1.2 tRNA dimethylallyltransferase compare
BPHYT_RS09145 -1.3 -7.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12055 -1.3 -9.4 phosphoenolpyruvate synthase compare
BPHYT_RS34410 -1.3 -1.3 hypothetical protein compare
BPHYT_RS31260 -1.3 -1.3 histidine kinase compare
BPHYT_RS17240 -1.3 -0.8 cell division protein FtsW compare
BPHYT_RS18280 -1.3 -6.4 TetR family transcriptional regulator compare
BPHYT_RS01455 -1.3 -1.1 peptide deformylase compare
BPHYT_RS23250 -1.3 -1.2 hypothetical protein compare
BPHYT_RS02695 -1.3 -5.1 photosynthetic protein synthase I compare
BPHYT_RS19085 -1.3 -4.9 flagellin compare
BPHYT_RS13835 -1.3 -1.1 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS34780 -1.3 -3.3 phytoene synthase compare
BPHYT_RS09160 -1.3 -2.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS18610 -1.3 -3.9 lytic transglycosylase compare
BPHYT_RS01630 -1.3 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS19320 -1.3 -5.7 glycine cleavage system protein T compare
BPHYT_RS02480 -1.3 -2.0 alkaline phosphatase compare
BPHYT_RS03685 -1.3 -2.4 Tol system periplasmic component YbgF compare
BPHYT_RS32260 -1.3 -1.0 hypothetical protein compare
BPHYT_RS11170 -1.3 -1.0 hypothetical protein compare
BPHYT_RS12520 -1.2 -3.0 nicotinate phosphoribosyltransferase compare
BPHYT_RS16675 -1.2 -0.8 dihydroorotase compare
BPHYT_RS29720 -1.2 -1.0 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS05035 -1.2 -3.9 sugar ABC transporter permease compare
BPHYT_RS18980 -1.2 -5.6 chemotaxis protein CheR compare
BPHYT_RS12935 -1.2 -5.2 chemotaxis protein CheY compare
BPHYT_RS06915 -1.2 -2.0 hypothetical protein compare
BPHYT_RS02905 -1.2 -9.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS02050 -1.2 -3.3 D-mannose isomerase (EC 5.3.1.7) (from data) compare
BPHYT_RS01510 -1.2 -5.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS18255 -1.2 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS30465 -1.2 -0.8 short-chain dehydrogenase compare
BPHYT_RS16180 -1.2 -0.9 TetR family transcriptional regulator compare
BPHYT_RS10540 -1.2 -1.1 secretion protein compare
BPHYT_RS10005 -1.2 -1.2 hypothetical protein compare
BPHYT_RS05020 -1.2 -4.1 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS01090 -1.2 -5.0 hypothetical protein compare
BPHYT_RS02930 -1.2 -1.6 KpsF/GutQ family protein compare
BPHYT_RS34295 -1.2 -0.8 fimbrial protein compare
BPHYT_RS25470 -1.2 -0.7 alkylhydroperoxidase compare
BPHYT_RS33610 -1.2 -1.1 DNA polymerase I compare
BPHYT_RS05330 -1.2 -1.6 phosphohydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms