Experiment set29S487 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16835 -6.9 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17690 -6.1 -8.4 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -5.9 -5.7 ketol-acid reductoisomerase compare
BPHYT_RS18320 -5.7 -3.9 orotate phosphoribosyltransferase compare
BPHYT_RS33835 -5.6 -7.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS03150 -5.6 -14.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -5.2 -7.1 phosphoserine aminotransferase compare
BPHYT_RS01595 -5.2 -13.4 homoserine O-acetyltransferase compare
BPHYT_RS17685 -5.1 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15920 -5.1 -9.7 argininosuccinate synthase compare
BPHYT_RS14050 -5.0 -5.9 UDP pyrophosphate phosphatase compare
BPHYT_RS33875 -5.0 -7.6 tryptophan synthase subunit alpha compare
BPHYT_RS17670 -4.7 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16735 -4.6 -7.0 phosphogluconate dehydratase compare
BPHYT_RS17885 -4.6 -3.1 3-dehydroquinate synthase compare
BPHYT_RS33880 -4.6 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS02590 -4.5 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33900 -4.5 -10.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS14895 -4.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06545 -4.5 -9.0 acetolactate synthase compare
BPHYT_RS12845 -4.4 -13.9 ATPase compare
BPHYT_RS08955 -4.4 -3.1 homoserine dehydrogenase compare
BPHYT_RS16270 -4.4 -4.9 phosphoglycerate kinase compare
BPHYT_RS15915 -4.3 -10.2 ornithine carbamoyltransferase compare
BPHYT_RS01455 -4.3 -1.6 peptide deformylase compare
BPHYT_RS16905 -4.3 -4.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33865 -3.9 -7.8 tryptophan synthase alpha chain compare
BPHYT_RS17855 -3.6 -17.0 glutamate synthase compare
BPHYT_RS06900 -3.6 -4.3 aspartate aminotransferase compare
BPHYT_RS06405 -3.5 -4.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS04335 -3.5 -2.2 membrane protein compare
BPHYT_RS02045 -3.4 -6.9 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS11390 -3.4 -13.0 penicillin-binding protein 1A compare
BPHYT_RS17680 -3.3 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS35885 -3.3 -5.9 hypothetical protein compare
BPHYT_RS12530 -3.3 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33915 -3.3 -7.6 isopropylmalate isomerase compare
BPHYT_RS02955 -3.2 -11.3 formyltetrahydrofolate deformylase compare
BPHYT_RS17400 -3.2 -7.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS17675 -3.1 -3.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14865 -3.1 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS33645 -3.1 -3.3 homoserine kinase compare
BPHYT_RS17520 -3.0 -2.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS14910 -3.0 -10.9 chorismate mutase compare
BPHYT_RS36385 -3.0 -1.5 TetR family transcriptional regulator compare
BPHYT_RS04080 -3.0 -6.7 chloride channel protein compare
BPHYT_RS05010 -3.0 -4.8 RpiR family transcriptional regulator compare
BPHYT_RS10100 -2.9 -4.8 dihydroxy-acid dehydratase compare
BPHYT_RS33840 -2.9 -4.8 amidophosphoribosyltransferase compare
BPHYT_RS02690 -2.9 -11.1 protoheme IX farnesyltransferase compare
BPHYT_RS12550 -2.8 -1.0 GTP-binding protein HflX compare
BPHYT_RS02860 -2.8 -1.0 membrane protein compare
BPHYT_RS33920 -2.8 -4.2 type II citrate synthase compare
BPHYT_RS02610 -2.8 -5.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS08960 -2.8 -1.7 threonine synthase compare
BPHYT_RS17390 -2.7 -13.7 anthranilate synthase subunit I compare
BPHYT_RS06610 -2.7 -1.4 triosephosphate isomerase compare
BPHYT_RS02595 -2.7 -1.4 sulfurtransferase compare
BPHYT_RS06045 -2.6 -7.9 transaldolase compare
BPHYT_RS17395 -2.6 -2.7 anthranilate synthase subunit II compare
BPHYT_RS17405 -2.6 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS04720 -2.5 -4.3 transcriptional regulator compare
BPHYT_RS17715 -2.5 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS18590 -2.5 -0.9 hypothetical protein compare
BPHYT_RS02525 -2.5 -8.3 membrane protein compare
BPHYT_RS20085 -2.5 -1.6 mannosyltransferase compare
BPHYT_RS05960 -2.5 -5.6 endoribonuclease L-PSP compare
BPHYT_RS14900 -2.4 -2.9 prephenate dehydrogenase compare
BPHYT_RS17945 -2.4 -2.4 cytochrome C biogenesis protein compare
BPHYT_RS29720 -2.3 -1.2 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS16340 -2.3 -4.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06975 -2.3 -1.5 glutamate racemase compare
BPHYT_RS31050 -2.3 -1.2 epimerase compare
BPHYT_RS09500 -2.3 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS13705 -2.2 -2.2 chorismate synthase compare
BPHYT_RS02760 -2.2 -1.1 cytochrome BD oxidase subunit II compare
BPHYT_RS20165 -2.2 -3.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS03135 -2.2 -10.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS14190 -2.1 -3.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17700 -2.1 -2.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06375 -2.1 -3.4 ribonuclease compare
BPHYT_RS16435 -2.1 -14.1 alcohol dehydrogenase compare
BPHYT_RS12150 -2.1 -12.3 PII uridylyl-transferase compare
BPHYT_RS03535 -2.1 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS27495 -2.0 -1.0 hypothetical protein compare
BPHYT_RS04955 -2.0 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS16245 -1.9 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS05905 -1.9 -1.5 hypothetical protein compare
BPHYT_RS04730 -1.9 -5.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS16430 -1.9 -12.5 cytochrome C compare
BPHYT_RS05020 -1.9 -6.0 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06155 -1.8 -5.3 DEAD/DEAH box helicase compare
BPHYT_RS03645 -1.8 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS06350 -1.8 -1.4 chemotaxis protein CheY compare
BPHYT_RS17265 -1.8 -1.3 cell division protein compare
BPHYT_RS12465 -1.8 -2.1 inositol monophosphatase compare
BPHYT_RS21170 -1.8 -2.4 LysR family transcriptional regulator compare
BPHYT_RS06410 -1.8 -2.3 transcriptional regulator compare
BPHYT_RS22190 -1.8 -1.2 nucleoid-structuring protein H-NS compare
BPHYT_RS02975 -1.8 -1.2 membrane protein compare
BPHYT_RS15415 -1.8 -8.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS24580 -1.8 -1.4 hypothetical protein compare
BPHYT_RS02665 -1.7 -9.2 MFS transporter compare
BPHYT_RS35770 -1.7 -1.2 glyoxalase compare
BPHYT_RS14855 -1.7 -1.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS05225 -1.7 -7.8 phosphoenolpyruvate carboxylase compare
BPHYT_RS06065 -1.7 -9.5 cytochrome C compare
BPHYT_RS14275 -1.7 -2.4 hypothetical protein compare
BPHYT_RS02685 -1.7 -8.7 cytochrome C oxidase subunit I compare
BPHYT_RS05035 -1.6 -4.6 sugar ABC transporter permease compare
BPHYT_RS14400 -1.6 -3.7 anti-sigma factor compare
BPHYT_RS13080 -1.6 -1.4 hypothetical protein compare
BPHYT_RS17890 -1.6 -1.2 shikimate kinase compare
BPHYT_RS03065 -1.6 -2.1 LuxR family transcriptional regulator compare
BPHYT_RS32260 -1.6 -1.1 hypothetical protein compare
BPHYT_RS03495 -1.6 -4.3 hypothetical protein compare
BPHYT_RS05025 -1.6 -4.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS12985 -1.6 -1.0 amino acid acetyltransferase compare
BPHYT_RS12615 -1.5 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS08125 -1.5 -7.5 ATPase compare
BPHYT_RS28690 -1.5 -1.9 diguanylate phosphodiesterase compare
BPHYT_RS11960 -1.5 -1.2 MarR family transcriptional regulator compare
BPHYT_RS06070 -1.5 -9.0 cytochrome C compare
BPHYT_RS01500 -1.5 -11.0 7-cyano-7-deazaguanine synthase compare
BPHYT_RS05255 -1.5 -2.1 phage abortive infection protein compare
BPHYT_RS16990 -1.5 -5.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS07770 -1.5 -2.4 hypothetical protein compare
BPHYT_RS12935 -1.5 -5.8 chemotaxis protein CheY compare
BPHYT_RS23570 -1.5 -2.7 chemotaxis protein CheY compare
BPHYT_RS09690 -1.5 -1.2 phosphate starvation-inducible protein PsiF compare
BPHYT_RS06540 -1.5 -6.2 RNA polymerase sigma70 factor compare
BPHYT_RS28830 -1.4 -0.9 LysR family transcriptional regulator compare
BPHYT_RS09515 -1.4 -1.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12055 -1.4 -9.7 phosphoenolpyruvate synthase compare
BPHYT_RS06345 -1.4 -5.7 sensor histidine kinase compare
BPHYT_RS04725 -1.4 -4.7 sulfite reductase compare
BPHYT_RS01505 -1.4 -2.3 7-cyano-7-deazaguanine reductase compare
BPHYT_RS17100 -1.4 -4.0 RNA pyrophosphohydrolase compare
BPHYT_RS27895 -1.4 -2.2 enoyl-CoA hydratase compare
BPHYT_RS16075 -1.4 -9.1 D-arabinitol 4-dehydrogenase compare
BPHYT_RS09145 -1.4 -7.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS16180 -1.4 -1.0 TetR family transcriptional regulator compare
BPHYT_RS23910 -1.4 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS20790 -1.4 -1.2 TetR family transcriptional regulator compare
BPHYT_RS08525 -1.4 -1.1 SAM-dependent methyltransferase compare
BPHYT_RS18705 -1.4 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16345 -1.4 -2.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16085 -1.4 -2.9 DeoR faimly transcriptional regulator compare
BPHYT_RS25450 -1.4 -1.2 membrane protein compare
BPHYT_RS30750 -1.4 -1.3 GntR family transcriptional regulator compare
BPHYT_RS08600 -1.4 -1.4 hypothetical protein compare
BPHYT_RS06530 -1.4 -1.8 membrane protein compare
BPHYT_RS10040 -1.4 -1.0 hypothetical protein compare
BPHYT_RS26135 -1.3 -1.5 ABC transporter permease compare
BPHYT_RS02905 -1.3 -10.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS18995 -1.3 -6.9 purine-binding chemotaxis protein compare
BPHYT_RS05040 -1.3 -2.9 sugar ABC transporter ATPase compare
BPHYT_RS33580 -1.3 -3.2 geranyltranstransferase compare
BPHYT_RS06550 -1.3 -1.8 acetolactate synthase compare
BPHYT_RS13160 -1.3 -1.2 membrane protein compare
BPHYT_RS33905 -1.3 -0.9 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS34490 -1.3 -0.9 hypothetical protein compare
BPHYT_RS19130 -1.3 -2.8 acetyltransferase compare
BPHYT_RS25080 -1.3 -1.5 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS18970 -1.3 -6.4 chemotaxis protein compare
BPHYT_RS28600 -1.2 -1.4 ArsC family transcriptional regulator compare
BPHYT_RS35480 -1.2 -1.4 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS02480 -1.2 -1.9 alkaline phosphatase compare
BPHYT_RS26750 -1.2 -1.7 aldolase compare
BPHYT_RS36300 -1.2 -8.1 hypothetical protein compare
BPHYT_RS08150 -1.2 -1.0 membrane protein compare
BPHYT_RS09825 -1.2 -1.6 Fe-S protein compare
BPHYT_RS23445 -1.2 -1.4 hexuronate transporter compare
BPHYT_RS12840 -1.2 -1.6 pyruvate dehydrogenase compare
BPHYT_RS01510 -1.2 -5.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS18255 -1.2 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS16175 -1.2 -1.4 hemolysin D compare
BPHYT_RS25095 -1.2 -1.4 AraC family transcriptional regulator compare
BPHYT_RS16840 -1.2 -1.4 transketolase compare
BPHYT_RS02640 -1.2 -7.7 cytochrome C oxidase compare
BPHYT_RS16675 -1.2 -0.8 dihydroorotase compare
BPHYT_RS22355 -1.2 -1.5 HAD family hydrolase compare
BPHYT_RS15490 -1.2 -2.0 coproporphyrinogen III oxidase compare
BPHYT_RS21460 -1.2 -1.2 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS22420 -1.2 -1.0 membrane protein compare
BPHYT_RS19000 -1.2 -6.5 chemotaxis protein CheA compare
BPHYT_RS18610 -1.2 -5.5 lytic transglycosylase compare
BPHYT_RS27390 -1.2 -1.9 hydroxyacid dehydrogenase compare
BPHYT_RS05485 -1.2 -2.4 nitrogen regulatory protein P-II 1 compare
BPHYT_RS08950 -1.2 -4.3 aminotransferase compare
BPHYT_RS16210 -1.2 -3.3 peptidase compare
BPHYT_RS33060 -1.2 -1.6 hypothetical protein compare
BPHYT_RS04430 -1.2 -1.6 amino acid ABC transporter ATPase compare
BPHYT_RS17920 -1.1 -1.1 protein CyaY compare
BPHYT_RS33115 -1.1 -3.3 small mechanosensitive ion channel protein MscS compare
BPHYT_RS14185 -1.1 -1.5 transcription elongation factor GreA compare
BPHYT_RS24255 -1.1 -2.0 hypothetical protein compare
BPHYT_RS18655 -1.1 -2.9 3-oxoacyl-ACP synthase compare
BPHYT_RS10095 -1.1 -1.6 integrase compare
BPHYT_RS18760 -1.1 -1.6 flagellar biosynthesis protein FliT compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms