Experiment set29S486 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.1 -3.7 phosphoglycerate kinase compare
BPHYT_RS03150 -5.9 -9.0 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -5.5 -3.8 phosphoserine aminotransferase compare
BPHYT_RS17690 -5.4 -7.4 imidazole glycerol phosphate synthase compare
BPHYT_RS33875 -5.2 -5.0 tryptophan synthase subunit alpha compare
BPHYT_RS02610 -5.1 -4.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17685 -4.9 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33835 -4.9 -6.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS18320 -4.9 -3.4 orotate phosphoribosyltransferase compare
BPHYT_RS01595 -4.8 -11.9 homoserine O-acetyltransferase compare
BPHYT_RS06555 -4.7 -4.6 ketol-acid reductoisomerase compare
BPHYT_RS35885 -4.7 -5.2 hypothetical protein compare
BPHYT_RS33880 -4.7 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS04955 -4.6 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS15920 -4.4 -6.8 argininosuccinate synthase compare
BPHYT_RS17400 -4.2 -8.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS33865 -4.2 -5.0 tryptophan synthase alpha chain compare
BPHYT_RS06545 -4.1 -4.0 acetolactate synthase compare
BPHYT_RS14910 -4.1 -11.7 chorismate mutase compare
BPHYT_RS17855 -4.0 -12.7 glutamate synthase compare
BPHYT_RS16835 -4.0 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15915 -3.9 -7.0 ornithine carbamoyltransferase compare
BPHYT_RS33900 -3.8 -8.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS17395 -3.8 -2.0 anthranilate synthase subunit II compare
BPHYT_RS02755 -3.7 -1.2 cyd operon protein YbgT compare
BPHYT_RS17675 -3.7 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17680 -3.6 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33915 -3.6 -6.8 isopropylmalate isomerase compare
BPHYT_RS17405 -3.5 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS12845 -3.5 -10.6 ATPase compare
BPHYT_RS02045 -3.5 -4.6 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS13705 -3.5 -2.3 chorismate synthase compare
BPHYT_RS17390 -3.4 -14.4 anthranilate synthase subunit I compare
BPHYT_RS14895 -3.4 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS05960 -3.4 -5.2 endoribonuclease L-PSP compare
BPHYT_RS16905 -3.4 -3.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17885 -3.3 -3.9 3-dehydroquinate synthase compare
BPHYT_RS12530 -3.2 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS08955 -3.2 -2.2 homoserine dehydrogenase compare
BPHYT_RS02590 -3.1 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS22730 -3.1 -1.8 serine/threonine kinase compare
BPHYT_RS02650 -3.1 -1.3 membrane protein compare
BPHYT_RS29620 -3.0 -0.9 hypothetical protein compare
BPHYT_RS02690 -3.0 -10.1 protoheme IX farnesyltransferase compare
BPHYT_RS06900 -2.9 -3.5 aspartate aminotransferase compare
BPHYT_RS03135 -2.9 -8.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS17240 -2.8 -0.9 cell division protein FtsW compare
BPHYT_RS17670 -2.8 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17945 -2.8 -1.9 cytochrome C biogenesis protein compare
BPHYT_RS14900 -2.7 -2.1 prephenate dehydrogenase compare
BPHYT_RS36300 -2.7 -9.3 hypothetical protein compare
BPHYT_RS16085 -2.7 -2.7 DeoR faimly transcriptional regulator compare
BPHYT_RS09385 -2.6 -0.8 FAD-dependent oxidoreductase compare
BPHYT_RS17265 -2.6 -1.1 cell division protein compare
BPHYT_RS17715 -2.5 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS36385 -2.5 -1.3 TetR family transcriptional regulator compare
BPHYT_RS28025 -2.5 -1.1 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS18655 -2.5 -2.6 3-oxoacyl-ACP synthase compare
BPHYT_RS18760 -2.5 -2.2 flagellar biosynthesis protein FliT compare
BPHYT_RS02860 -2.4 -0.7 membrane protein compare
BPHYT_RS17890 -2.4 -1.2 shikimate kinase compare
BPHYT_RS02665 -2.4 -12.3 MFS transporter compare
BPHYT_RS04720 -2.3 -3.6 transcriptional regulator compare
BPHYT_RS30010 -2.3 -1.0 cell division protein compare
BPHYT_RS12615 -2.2 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS17445 -2.2 -3.0 GTP-binding protein YchF compare
BPHYT_RS13890 -2.2 -1.8 RpiR family transcriptional regulator compare
BPHYT_RS18970 -2.2 -11.2 chemotaxis protein compare
BPHYT_RS10100 -2.1 -2.6 dihydroxy-acid dehydratase compare
BPHYT_RS25500 -2.1 -1.1 hypothetical protein compare
BPHYT_RS33920 -2.1 -2.8 type II citrate synthase compare
BPHYT_RS17380 -2.1 -9.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS14400 -2.1 -2.1 anti-sigma factor compare
BPHYT_RS23475 -2.1 -0.9 luciferase compare
BPHYT_RS14865 -2.0 -1.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS19000 -2.0 -8.3 chemotaxis protein CheA compare
BPHYT_RS07325 -2.0 -0.6 GntR family transcriptional regulator compare
BPHYT_RS10095 -2.0 -1.4 integrase compare
BPHYT_RS00690 -2.0 -1.1 transcriptional regulator compare
BPHYT_RS02525 -2.0 -6.6 membrane protein compare
BPHYT_RS16180 -2.0 -0.9 TetR family transcriptional regulator compare
BPHYT_RS06070 -2.0 -5.6 cytochrome C compare
BPHYT_RS14050 -2.0 -5.8 UDP pyrophosphate phosphatase compare
BPHYT_RS28255 -2.0 -0.9 hypothetical protein compare
BPHYT_RS10240 -2.0 -0.9 translation initiation inhibitor compare
BPHYT_RS34490 -2.0 -0.8 hypothetical protein compare
BPHYT_RS32250 -2.0 -1.9 membrane protein compare
BPHYT_RS26465 -2.0 -0.8 metallophosphoesterase compare
BPHYT_RS01455 -2.0 -1.0 peptide deformylase compare
BPHYT_RS16735 -2.0 -4.4 phosphogluconate dehydratase compare
BPHYT_RS20365 -2.0 -2.9 LysR family transcriptional regulator compare
BPHYT_RS17490 -2.0 -2.0 haloacid dehalogenase compare
BPHYT_RS06610 -1.9 -0.8 triosephosphate isomerase compare
BPHYT_RS20060 -1.9 -1.0 hypothetical protein compare
BPHYT_RS30065 -1.9 -1.6 shikimate dehydrogenase compare
BPHYT_RS26135 -1.9 -1.1 ABC transporter permease compare
BPHYT_RS00325 -1.9 -1.8 hypothetical protein compare
BPHYT_RS11765 -1.9 -0.8 polyamine ABC transporter permease compare
BPHYT_RS08125 -1.9 -7.0 ATPase compare
BPHYT_RS36055 -1.9 -3.5 hypothetical protein compare
BPHYT_RS03655 -1.9 -1.1 membrane protein compare
BPHYT_RS20790 -1.9 -0.8 TetR family transcriptional regulator compare
BPHYT_RS11980 -1.8 -2.2 LysR family transcriptional regulator compare
BPHYT_RS02760 -1.8 -0.8 cytochrome BD oxidase subunit II compare
BPHYT_RS11390 -1.8 -7.7 penicillin-binding protein 1A compare
BPHYT_RS16245 -1.8 -1.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18995 -1.8 -4.6 purine-binding chemotaxis protein compare
BPHYT_RS13900 -1.8 -1.5 ATPase compare
BPHYT_RS16435 -1.8 -9.2 alcohol dehydrogenase compare
BPHYT_RS18610 -1.8 -5.1 lytic transglycosylase compare
BPHYT_RS01500 -1.8 -11.4 7-cyano-7-deazaguanine synthase compare
BPHYT_RS31910 -1.8 -1.1 hypothetical protein compare
BPHYT_RS16320 -1.8 -3.2 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS26675 -1.8 -0.9 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS06405 -1.8 -3.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS05245 -1.8 -2.6 hypothetical protein compare
BPHYT_RS13325 -1.8 -1.8 TetR family transcriptional regulator compare
BPHYT_RS26685 -1.8 -0.8 precorrin-8X methylmutase compare
BPHYT_RS16175 -1.8 -1.6 hemolysin D compare
BPHYT_RS13350 -1.8 -4.1 shikimate kinase compare
BPHYT_RS21330 -1.8 -1.1 hypothetical protein compare
BPHYT_RS12925 -1.7 -0.7 exodeoxyribonuclease III compare
BPHYT_RS17700 -1.7 -1.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS00380 -1.7 -2.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25340 -1.7 -1.3 sulfatase compare
BPHYT_RS19335 -1.7 -3.2 hypothetical protein compare
BPHYT_RS18280 -1.7 -6.5 TetR family transcriptional regulator compare
BPHYT_RS03320 -1.7 -2.5 lactoylglutathione lyase compare
BPHYT_RS36460 -1.7 -3.4 hypothetical protein compare
BPHYT_RS32115 -1.7 -1.9 hypothetical protein compare
BPHYT_RS11655 -1.7 -1.3 chromosome partitioning protein ParB compare
BPHYT_RS36275 -1.7 -1.9 hypothetical protein compare
BPHYT_RS36400 -1.7 -1.3 hypothetical protein compare
BPHYT_RS29810 -1.7 -0.9 hexapeptide transferase compare
BPHYT_RS01965 -1.7 -1.0 tRNA-Ala compare
BPHYT_RS16340 -1.7 -2.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS08950 -1.7 -6.2 aminotransferase compare
BPHYT_RS06410 -1.7 -1.9 transcriptional regulator compare
BPHYT_RS20900 -1.7 -1.9 phytanoyl-CoA dioxygenase compare
BPHYT_RS18980 -1.7 -6.1 chemotaxis protein CheR compare
BPHYT_RS09160 -1.6 -3.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS20520 -1.6 -1.0 transcriptional regulator compare
BPHYT_RS06375 -1.6 -1.9 ribonuclease compare
BPHYT_RS03495 -1.6 -2.3 hypothetical protein compare
BPHYT_RS04080 -1.6 -3.9 chloride channel protein compare
BPHYT_RS25875 -1.6 -0.7 type III secretion protein compare
BPHYT_RS15620 -1.6 -1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS22815 -1.6 -1.0 TonB-denpendent receptor compare
BPHYT_RS04370 -1.6 -1.0 glycosyl transferase compare
BPHYT_RS10065 -1.6 -0.8 cytochrome C oxidase subunit I compare
BPHYT_RS17075 -1.6 -2.4 ABC transporter permease compare
BPHYT_RS07835 -1.6 -1.4 muconolactone delta-isomerase compare
BPHYT_RS06065 -1.6 -7.6 cytochrome C compare
BPHYT_RS34745 -1.6 -1.1 hypothetical protein compare
BPHYT_RS16075 -1.6 -8.0 D-arabinitol 4-dehydrogenase compare
BPHYT_RS16430 -1.6 -9.1 cytochrome C compare
BPHYT_RS23250 -1.6 -1.1 hypothetical protein compare
BPHYT_RS03065 -1.5 -1.5 LuxR family transcriptional regulator compare
BPHYT_RS14735 -1.5 -0.8 hypothetical protein compare
BPHYT_RS18840 -1.5 -7.7 flagellar hook-associated protein FlgL compare
BPHYT_RS08360 -1.5 -1.2 LysR family transcriptional regulator compare
BPHYT_RS28360 -1.5 -0.7 carboxymuconolactone decarboxylase compare
BPHYT_RS17520 -1.5 -2.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17100 -1.5 -2.9 RNA pyrophosphohydrolase compare
BPHYT_RS01280 -1.5 -1.7 hypothetical protein compare
BPHYT_RS02955 -1.5 -4.9 formyltetrahydrofolate deformylase compare
BPHYT_RS03535 -1.5 -1.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS25585 -1.5 -0.9 membrane protein compare
BPHYT_RS31590 -1.5 -1.0 hypothetical protein compare
BPHYT_RS16345 -1.5 -2.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS01510 -1.5 -7.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS10120 -1.5 -1.7 membrane protein compare
BPHYT_RS20880 -1.5 -0.6 polyketide cyclase compare
BPHYT_RS35495 -1.5 -1.3 nucleotide pyrophosphohydrolase compare
BPHYT_RS35750 -1.5 -0.9 hypothetical protein compare
BPHYT_RS19120 -1.5 -3.9 3-oxoacyl-ACP synthase compare
BPHYT_RS31440 -1.5 -1.0 hypothetical protein compare
BPHYT_RS03405 -1.5 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS24460 -1.4 -2.5 nucleoside hydrolase compare
BPHYT_RS33840 -1.4 -2.6 amidophosphoribosyltransferase compare
BPHYT_RS28825 -1.4 -2.1 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS08960 -1.4 -0.8 threonine synthase compare
BPHYT_RS25095 -1.4 -1.7 AraC family transcriptional regulator compare
BPHYT_RS18845 -1.4 -9.4 flagellar hook-associated protein FlgK conserved
BPHYT_RS28410 -1.4 -1.5 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS06710 -1.4 -0.6 hypothetical protein compare
BPHYT_RS26975 -1.4 -1.0 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS20180 -1.4 -2.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS00540 -1.4 -3.0 hypothetical protein compare
BPHYT_RS35735 -1.4 -1.0 nitroreductase compare
BPHYT_RS22470 -1.4 -0.9 hydrolase compare
BPHYT_RS26490 -1.4 -0.6 hypothetical protein compare
BPHYT_RS04985 -1.4 -1.3 hypothetical protein compare
BPHYT_RS36060 -1.4 -3.0 hypothetical protein compare
BPHYT_RS03400 -1.4 -0.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS24315 -1.4 -1.0 phosphoribosyltransferase compare
BPHYT_RS16355 -1.4 -5.2 recombination protein RecX compare
BPHYT_RS17185 -1.4 -3.8 N-acetylglutamate synthase compare
BPHYT_RS32470 -1.4 -1.2 membrane protein compare
BPHYT_RS15285 -1.4 -2.1 transcription elongation factor GreB compare


Specific Phenotypes

For 14 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms